Wall clock time and date at job start Tue Mar 31 2020 00:04:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86798 * 119.99912 * 2 1 4 4 H 1.48493 * 109.47114 * 269.99846 * 3 2 1 5 5 H 1.48498 * 109.47003 * 29.99823 * 3 2 1 6 6 H 1.48500 * 109.46998 * 149.99512 * 3 2 1 7 7 C 1.38807 * 119.99836 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99857 * 180.02562 * 7 2 1 9 9 N 1.36934 * 120.00354 * 0.02562 * 7 2 1 10 10 C 1.46500 * 120.00132 * 180.02562 * 9 7 2 11 11 C 1.53005 * 109.47055 * 179.97438 * 10 9 7 12 12 N 1.46505 * 109.47069 * 179.97438 * 11 10 9 13 13 C 1.46497 * 120.00240 * 270.00106 * 12 11 10 14 14 C 1.52997 * 109.47240 * 278.48804 * 13 12 11 15 15 O 1.42904 * 109.46760 * 67.60558 * 14 13 12 16 16 C 1.34772 * 119.99483 * 89.99900 * 12 11 10 17 17 O 1.21554 * 120.00282 * 6.21075 * 16 12 11 18 18 C 1.47847 * 120.00018 * 186.20648 * 16 12 11 19 19 C 1.39583 * 120.14317 * 314.90194 * 18 16 12 20 20 C 1.37955 * 119.85264 * 179.97438 * 19 18 16 21 21 C 1.38356 * 120.14571 * 359.97438 * 20 19 18 22 22 C 1.38357 * 120.29265 * 0.02562 * 21 20 19 23 23 C 1.37955 * 120.14942 * 359.97438 * 22 21 20 24 24 H 0.96998 * 119.99989 * 0.02562 * 1 2 3 25 25 H 0.97005 * 120.00101 * 359.97438 * 9 7 2 26 26 H 1.08999 * 109.47563 * 59.99913 * 10 9 7 27 27 H 1.09003 * 109.46937 * 299.99723 * 10 9 7 28 28 H 1.08999 * 109.47030 * 60.00191 * 11 10 9 29 29 H 1.08991 * 109.47524 * 299.99907 * 11 10 9 30 30 H 1.09005 * 109.46932 * 38.49138 * 13 12 11 31 31 H 1.09001 * 109.46948 * 158.49017 * 13 12 11 32 32 H 1.09003 * 109.47058 * 187.59942 * 14 13 12 33 33 H 1.08999 * 109.47299 * 307.60957 * 14 13 12 34 34 H 0.96707 * 113.99700 * 180.02562 * 15 14 13 35 35 H 1.08002 * 120.07146 * 359.70669 * 19 18 16 36 36 H 1.08002 * 119.92443 * 180.02562 * 20 19 18 37 37 H 1.08005 * 119.85529 * 179.97438 * 21 20 19 38 38 H 1.08004 * 119.93182 * 180.02562 * 22 21 20 39 39 H 1.08000 * 120.08018 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4476 2.6526 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0102 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 2.0581 -3.6568 0.0017 11 6 1.0638 -4.8197 0.0021 12 7 1.7964 -6.0885 0.0026 13 6 2.1627 -6.7233 -1.2658 14 6 0.9626 -7.4981 -1.8138 15 8 -0.0638 -6.5794 -2.1944 16 6 2.1332 -6.6715 1.1700 17 8 1.7333 -6.2063 2.2194 18 6 2.9891 -7.8771 1.1744 19 6 2.7377 -8.9184 0.2796 20 6 3.5404 -10.0404 0.2886 21 6 4.5931 -10.1344 1.1815 22 6 4.8477 -9.1058 2.0710 23 6 4.0527 -7.9784 2.0726 24 1 -0.4850 0.8400 -0.0004 25 1 0.3555 -2.3881 0.0005 26 1 2.6841 -3.7142 0.8921 27 1 2.6854 -3.7149 -0.8879 28 1 0.4376 -4.7626 -0.8882 29 1 0.4369 -4.7615 0.8917 30 1 2.4592 -5.9578 -1.9830 31 1 2.9939 -7.4093 -1.1021 32 1 1.2711 -8.0787 -2.6831 33 1 0.5818 -8.1699 -1.0445 34 1 -0.8572 -7.0019 -2.5512 35 1 1.9138 -8.8479 -0.4152 36 1 3.3471 -10.8466 -0.4035 37 1 5.2183 -11.0151 1.1847 38 1 5.6713 -9.1852 2.7652 39 1 4.2523 -7.1763 2.7677 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001672576356.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:04:50 Heat of formation + Delta-G solvation = -29.526451 kcal Electronic energy + Delta-G solvation = -21476.348282 eV Core-core repulsion = 18192.023667 eV Total energy + Delta-G solvation = -3284.324616 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.54611 -38.43840 -37.27781 -35.52623 -34.33054 -32.03308 -31.24385 -30.86737 -29.45342 -27.46387 -24.35800 -23.33341 -22.94205 -22.61712 -21.33968 -19.37892 -17.88974 -17.61023 -17.09977 -16.40630 -16.06928 -15.61502 -15.12870 -14.71344 -14.44470 -14.14238 -13.82893 -13.64246 -13.54952 -13.21632 -13.10628 -12.84559 -12.64954 -12.27588 -11.84666 -11.68353 -11.33396 -11.15695 -10.87270 -10.83287 -10.56089 -10.15508 -10.04997 -9.80065 -9.63348 -9.21639 -9.10139 -8.79649 -8.45637 -6.84787 -5.68620 -2.97423 0.78930 1.10207 2.76577 3.05923 3.49179 3.53744 3.56202 3.57812 4.04081 4.33888 4.56959 4.66985 4.67792 4.79308 4.90576 5.00472 5.09583 5.14312 5.25287 5.29977 5.54168 5.62935 5.65381 5.73005 5.86301 5.99736 6.07848 6.14837 6.17165 6.19978 6.32180 6.60155 6.65787 6.84583 7.01585 7.45114 7.58369 7.76883 8.27189 8.50020 9.60694 10.18112 10.53631 11.54426 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.022364 B = 0.003980 C = 0.003580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1251.724650 B = 7033.531910 C = 7818.440688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.015 4.015 3 Si 0.908 3.092 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.236 4.236 8 H 0.069 0.931 9 N -0.729 5.729 10 C 0.144 3.856 11 C 0.108 3.892 12 N -0.592 5.592 13 C 0.095 3.905 14 C 0.055 3.945 15 O -0.559 6.559 16 C 0.551 3.449 17 O -0.526 6.526 18 C -0.120 4.120 19 C -0.107 4.107 20 C -0.127 4.127 21 C -0.104 4.104 22 C -0.124 4.124 23 C -0.068 4.068 24 H 0.255 0.745 25 H 0.384 0.616 26 H 0.019 0.981 27 H 0.017 0.983 28 H 0.094 0.906 29 H 0.082 0.918 30 H 0.091 0.909 31 H 0.102 0.898 32 H 0.057 0.943 33 H 0.049 0.951 34 H 0.377 0.623 35 H 0.135 0.865 36 H 0.127 0.873 37 H 0.125 0.875 38 H 0.128 0.872 39 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.430 -25.116 -3.528 26.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.211 4.211 3 Si 0.740 3.260 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.208 1.208 7 C -0.368 4.368 8 H 0.087 0.913 9 N -0.374 5.374 10 C 0.015 3.985 11 C -0.014 4.014 12 N -0.324 5.324 13 C -0.029 4.029 14 C -0.024 4.024 15 O -0.364 6.364 16 C 0.338 3.662 17 O -0.402 6.402 18 C -0.123 4.123 19 C -0.125 4.125 20 C -0.145 4.145 21 C -0.123 4.123 22 C -0.142 4.142 23 C -0.087 4.087 24 H 0.065 0.935 25 H 0.218 0.782 26 H 0.036 0.964 27 H 0.035 0.965 28 H 0.112 0.888 29 H 0.100 0.900 30 H 0.109 0.891 31 H 0.120 0.880 32 H 0.075 0.925 33 H 0.067 0.933 34 H 0.224 0.776 35 H 0.152 0.848 36 H 0.145 0.855 37 H 0.143 0.857 38 H 0.146 0.854 39 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 6.778 -24.279 -2.749 25.357 hybrid contribution -0.188 0.434 -0.282 0.551 sum 6.590 -23.845 -3.032 24.924 Atomic orbital electron populations 1.69669 1.05085 1.25583 1.57876 1.24742 0.95551 0.97647 1.03114 0.86162 0.78644 0.83797 0.77445 1.21748 1.21750 1.20787 1.19215 0.90992 0.84036 1.42518 0.91256 1.42198 1.05902 0.99735 1.89533 1.20899 0.93933 0.85887 0.97782 1.21805 0.94693 0.80747 1.04150 1.47728 1.56456 1.23394 1.04831 1.21964 0.95946 0.98668 0.86297 1.22816 0.89714 0.91893 0.97990 1.86621 1.28611 1.35779 1.85428 1.18436 0.80372 0.83396 0.83950 1.90823 1.53868 1.64446 1.31072 1.20040 0.98030 0.95652 0.98580 1.21746 0.99860 0.93272 0.97641 1.21097 0.95950 0.97787 0.99676 1.21329 0.97214 0.98594 0.95126 1.21153 0.99926 0.93638 0.99438 1.21259 0.93026 0.98081 0.96337 0.93538 0.78198 0.96353 0.96528 0.88779 0.89951 0.89092 0.87990 0.92507 0.93311 0.77550 0.84771 0.85506 0.85729 0.85361 0.85004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.36 13.06 55.49 0.72 -28.64 16 2 C -0.01 -0.44 5.50 -17.43 -0.10 -0.54 16 3 Si 0.91 23.27 29.55 -169.99 -5.02 18.24 16 4 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 5 H -0.29 -7.47 7.11 56.52 0.40 -7.07 16 6 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16 7 C -0.24 -7.03 9.99 -15.06 -0.15 -7.18 16 8 H 0.07 2.00 7.83 -52.48 -0.41 1.59 16 9 N -0.73 -20.03 5.60 -59.91 -0.34 -20.36 16 10 C 0.14 3.26 6.58 -4.04 -0.03 3.23 16 11 C 0.11 2.06 5.44 -4.04 -0.02 2.04 16 12 N -0.59 -9.22 2.48 -174.80 -0.43 -9.65 16 13 C 0.09 1.08 5.34 -4.04 -0.02 1.06 16 14 C 0.05 0.49 6.37 37.16 0.24 0.73 16 15 O -0.56 -6.23 11.86 -35.23 -0.42 -6.65 16 16 C 0.55 9.14 7.28 -12.33 -0.09 9.05 16 17 O -0.53 -10.98 16.54 5.32 0.09 -10.89 16 18 C -0.12 -1.53 5.12 -104.96 -0.54 -2.07 16 19 C -0.11 -1.02 7.38 -39.18 -0.29 -1.31 16 20 C -0.13 -0.97 10.03 -39.64 -0.40 -1.37 16 21 C -0.10 -0.80 10.04 -39.49 -0.40 -1.19 16 22 C -0.12 -1.10 10.03 -39.64 -0.40 -1.50 16 23 C -0.07 -0.80 9.69 -39.18 -0.38 -1.18 16 24 H 0.25 7.70 8.31 -40.82 -0.34 7.36 16 25 H 0.38 10.97 7.67 -40.82 -0.31 10.66 16 26 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.09 1.77 6.43 -51.93 -0.33 1.44 16 29 H 0.08 1.74 7.35 -51.93 -0.38 1.36 16 30 H 0.09 1.10 8.13 -51.93 -0.42 0.68 16 31 H 0.10 0.96 4.96 -51.93 -0.26 0.70 16 32 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.05 0.42 6.39 -51.93 -0.33 0.08 16 34 H 0.38 2.47 9.12 45.56 0.42 2.89 16 35 H 0.13 1.09 3.77 -52.49 -0.20 0.89 16 36 H 0.13 0.63 8.06 -52.49 -0.42 0.21 16 37 H 0.12 0.63 8.06 -52.48 -0.42 0.21 16 38 H 0.13 0.86 8.06 -52.48 -0.42 0.43 16 39 H 0.13 1.61 8.06 -52.49 -0.42 1.19 16 LS Contribution 325.81 15.07 4.91 4.91 Total: -1.00 -36.95 325.81 -7.38 -44.33 By element: Atomic # 1 Polarization: 13.29 SS G_CDS: -4.33 Total: 8.96 kcal Atomic # 6 Polarization: 2.32 SS G_CDS: -2.57 Total: -0.25 kcal Atomic # 7 Polarization: -58.61 SS G_CDS: -0.04 Total: -58.65 kcal Atomic # 8 Polarization: -17.21 SS G_CDS: -0.33 Total: -17.54 kcal Atomic # 14 Polarization: 23.27 SS G_CDS: -5.02 Total: 18.24 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -36.95 -7.38 -44.33 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001672576356.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.806 kcal (2) G-P(sol) polarization free energy of solvation -36.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds