Wall clock time and date at job start Tue Mar 31 2020 00:04:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86798 * 119.99912 * 2 1 4 4 H 1.48493 * 109.47114 * 269.99846 * 3 2 1 5 5 H 1.48498 * 109.47003 * 29.99823 * 3 2 1 6 6 H 1.48500 * 109.46998 * 149.99512 * 3 2 1 7 7 C 1.38807 * 119.99836 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99857 * 180.02562 * 7 2 1 9 9 N 1.36934 * 120.00354 * 0.02562 * 7 2 1 10 10 C 1.46500 * 120.00132 * 180.02562 * 9 7 2 11 11 C 1.53005 * 109.47055 * 179.97438 * 10 9 7 12 12 N 1.46505 * 109.47069 * 179.97438 * 11 10 9 13 13 C 1.46497 * 120.00240 * 270.00106 * 12 11 10 14 14 C 1.52997 * 109.47240 * 278.48804 * 13 12 11 15 15 O 1.42904 * 109.46760 * 67.60558 * 14 13 12 16 16 C 1.34772 * 119.99483 * 89.99900 * 12 11 10 17 17 O 1.21554 * 120.00282 * 6.21075 * 16 12 11 18 18 C 1.47847 * 120.00018 * 186.20648 * 16 12 11 19 19 C 1.39583 * 120.14317 * 314.90194 * 18 16 12 20 20 C 1.37955 * 119.85264 * 179.97438 * 19 18 16 21 21 C 1.38356 * 120.14571 * 359.97438 * 20 19 18 22 22 C 1.38357 * 120.29265 * 0.02562 * 21 20 19 23 23 C 1.37955 * 120.14942 * 359.97438 * 22 21 20 24 24 H 0.96998 * 119.99989 * 0.02562 * 1 2 3 25 25 H 0.97005 * 120.00101 * 359.97438 * 9 7 2 26 26 H 1.08999 * 109.47563 * 59.99913 * 10 9 7 27 27 H 1.09003 * 109.46937 * 299.99723 * 10 9 7 28 28 H 1.08999 * 109.47030 * 60.00191 * 11 10 9 29 29 H 1.08991 * 109.47524 * 299.99907 * 11 10 9 30 30 H 1.09005 * 109.46932 * 38.49138 * 13 12 11 31 31 H 1.09001 * 109.46948 * 158.49017 * 13 12 11 32 32 H 1.09003 * 109.47058 * 187.59942 * 14 13 12 33 33 H 1.08999 * 109.47299 * 307.60957 * 14 13 12 34 34 H 0.96707 * 113.99700 * 180.02562 * 15 14 13 35 35 H 1.08002 * 120.07146 * 359.70669 * 19 18 16 36 36 H 1.08002 * 119.92443 * 180.02562 * 20 19 18 37 37 H 1.08005 * 119.85529 * 179.97438 * 21 20 19 38 38 H 1.08004 * 119.93182 * 180.02562 * 22 21 20 39 39 H 1.08000 * 120.08018 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4476 2.6526 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0102 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 2.0581 -3.6568 0.0017 11 6 1.0638 -4.8197 0.0021 12 7 1.7964 -6.0885 0.0026 13 6 2.1627 -6.7233 -1.2658 14 6 0.9626 -7.4981 -1.8138 15 8 -0.0638 -6.5794 -2.1944 16 6 2.1332 -6.6715 1.1700 17 8 1.7333 -6.2063 2.2194 18 6 2.9891 -7.8771 1.1744 19 6 2.7377 -8.9184 0.2796 20 6 3.5404 -10.0404 0.2886 21 6 4.5931 -10.1344 1.1815 22 6 4.8477 -9.1058 2.0710 23 6 4.0527 -7.9784 2.0726 24 1 -0.4850 0.8400 -0.0004 25 1 0.3555 -2.3881 0.0005 26 1 2.6841 -3.7142 0.8921 27 1 2.6854 -3.7149 -0.8879 28 1 0.4376 -4.7626 -0.8882 29 1 0.4369 -4.7615 0.8917 30 1 2.4592 -5.9578 -1.9830 31 1 2.9939 -7.4093 -1.1021 32 1 1.2711 -8.0787 -2.6831 33 1 0.5818 -8.1699 -1.0445 34 1 -0.8572 -7.0019 -2.5512 35 1 1.9138 -8.8479 -0.4152 36 1 3.3471 -10.8466 -0.4035 37 1 5.2183 -11.0151 1.1847 38 1 5.6713 -9.1852 2.7652 39 1 4.2523 -7.1763 2.7677 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001672576356.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:04:49 Heat of formation + Delta-G solvation = -57.796737 kcal Electronic energy + Delta-G solvation = -21477.574174 eV Core-core repulsion = 18192.023667 eV Total energy + Delta-G solvation = -3285.550507 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.64084 -39.35086 -38.27583 -37.09138 -35.97454 -33.70383 -32.23594 -31.98669 -30.58534 -29.07743 -26.05123 -24.56836 -23.95919 -23.52658 -22.92921 -20.54733 -19.25034 -18.72714 -18.54793 -17.55538 -17.11051 -16.75786 -16.48636 -16.06265 -15.64408 -15.36331 -15.21312 -15.03314 -14.89077 -14.62176 -14.33025 -14.01919 -13.73295 -13.21861 -13.08767 -12.96050 -12.79503 -12.60664 -12.57483 -12.24555 -12.15457 -11.97440 -11.89986 -11.05229 -11.01486 -10.85706 -9.98223 -9.88006 -9.74733 -9.10640 -7.99670 -5.31658 -0.01779 0.40366 1.44031 1.47946 1.55467 1.57888 1.88017 2.53866 2.80423 3.30414 3.33662 3.39116 3.87178 3.99172 4.01830 4.06533 4.09504 4.20845 4.25918 4.33796 4.43272 4.49459 4.53145 4.54709 4.62624 4.84501 4.84956 5.00131 5.03043 5.07605 5.36045 5.39290 5.44055 5.48740 5.52379 5.96812 6.20969 6.29894 6.96001 7.00253 7.26789 7.97048 8.24237 9.23902 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.022364 B = 0.003980 C = 0.003580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1251.724650 B = 7033.531910 C = 7818.440688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.968 5.968 2 C -0.073 4.073 3 Si 0.982 3.018 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.271 1.271 7 C -0.255 4.255 8 H 0.073 0.927 9 N -0.742 5.742 10 C 0.151 3.849 11 C 0.128 3.872 12 N -0.590 5.590 13 C 0.086 3.914 14 C 0.057 3.943 15 O -0.591 6.591 16 C 0.545 3.455 17 O -0.586 6.586 18 C -0.146 4.146 19 C -0.105 4.105 20 C -0.117 4.117 21 C -0.094 4.094 22 C -0.124 4.124 23 C -0.093 4.093 24 H 0.254 0.746 25 H 0.375 0.625 26 H -0.003 1.003 27 H 0.027 0.973 28 H 0.100 0.900 29 H 0.054 0.946 30 H 0.082 0.918 31 H 0.127 0.873 32 H 0.098 0.902 33 H 0.056 0.944 34 H 0.396 0.604 35 H 0.150 0.850 36 H 0.166 0.834 37 H 0.161 0.839 38 H 0.149 0.851 39 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.111 -27.814 -5.240 29.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.618 5.618 2 C -0.265 4.265 3 Si 0.810 3.190 4 H -0.206 1.206 5 H -0.217 1.217 6 H -0.196 1.196 7 C -0.387 4.387 8 H 0.091 0.909 9 N -0.385 5.385 10 C 0.023 3.977 11 C 0.004 3.996 12 N -0.320 5.320 13 C -0.035 4.035 14 C -0.021 4.021 15 O -0.400 6.400 16 C 0.335 3.665 17 O -0.467 6.467 18 C -0.149 4.149 19 C -0.123 4.123 20 C -0.135 4.135 21 C -0.111 4.111 22 C -0.142 4.142 23 C -0.112 4.112 24 H 0.063 0.937 25 H 0.207 0.793 26 H 0.015 0.985 27 H 0.045 0.955 28 H 0.118 0.882 29 H 0.073 0.927 30 H 0.101 0.899 31 H 0.144 0.856 32 H 0.116 0.884 33 H 0.074 0.926 34 H 0.246 0.754 35 H 0.167 0.833 36 H 0.184 0.816 37 H 0.179 0.821 38 H 0.167 0.833 39 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 8.485 -27.034 -4.510 28.691 hybrid contribution -0.662 1.146 0.239 1.345 sum 7.823 -25.888 -4.271 27.380 Atomic orbital electron populations 1.69836 1.06717 1.26428 1.58797 1.25678 0.96552 1.01351 1.02926 0.85027 0.77506 0.78730 0.77774 1.20631 1.21727 1.19639 1.19606 0.91423 0.85192 1.42463 0.90914 1.42375 1.05655 1.00899 1.89572 1.20919 0.94283 0.85591 0.96887 1.21327 0.93720 0.81581 1.02964 1.47786 1.55648 1.22028 1.06563 1.22344 0.98244 0.99000 0.83943 1.22872 0.88298 0.91260 0.99705 1.86554 1.30053 1.37576 1.85825 1.19198 0.79881 0.84255 0.83128 1.90773 1.56162 1.66600 1.33131 1.19818 0.98582 0.95211 1.01292 1.21920 1.00573 0.92863 0.96909 1.21556 0.94709 0.97570 0.99655 1.21812 0.97003 0.98814 0.93511 1.21414 0.99792 0.92815 1.00167 1.21270 0.94248 0.99130 0.96565 0.93680 0.79276 0.98480 0.95495 0.88176 0.92743 0.89917 0.85571 0.88368 0.92591 0.75373 0.83294 0.81623 0.82131 0.83309 0.87254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -62.12 13.06 21.65 0.28 -61.84 16 2 C -0.07 -4.41 5.50 84.86 0.47 -3.95 16 3 Si 0.98 48.24 29.55 68.60 2.03 50.27 16 4 H -0.28 -13.23 7.11 99.48 0.71 -12.52 16 5 H -0.29 -14.20 7.11 99.48 0.71 -13.49 16 6 H -0.27 -12.74 7.11 99.48 0.71 -12.03 16 7 C -0.26 -15.52 9.99 84.03 0.84 -14.69 16 8 H 0.07 4.27 7.83 -2.91 -0.02 4.24 16 9 N -0.74 -42.37 5.60 -343.44 -1.92 -44.29 16 10 C 0.15 7.18 6.58 86.38 0.57 7.75 16 11 C 0.13 5.14 5.44 86.38 0.47 5.61 16 12 N -0.59 -18.93 2.48 -825.22 -2.05 -20.98 16 13 C 0.09 1.86 5.34 86.38 0.46 2.32 16 14 C 0.06 0.88 6.37 71.98 0.46 1.34 16 15 O -0.59 -12.42 11.86 -148.98 -1.77 -14.19 16 16 C 0.55 19.06 7.28 86.79 0.63 19.69 16 17 O -0.59 -26.57 16.54 -3.89 -0.06 -26.64 16 18 C -0.15 -3.73 5.12 -20.09 -0.10 -3.83 16 19 C -0.10 -1.72 7.38 22.53 0.17 -1.56 16 20 C -0.12 -1.24 10.03 22.23 0.22 -1.02 16 21 C -0.09 -1.01 10.04 22.33 0.22 -0.79 16 22 C -0.12 -1.95 10.03 22.23 0.22 -1.73 16 23 C -0.09 -2.24 9.69 22.53 0.22 -2.02 16 24 H 0.25 15.62 8.31 -92.71 -0.77 14.85 16 25 H 0.38 22.44 7.67 -92.70 -0.71 21.73 16 26 H 0.00 -0.14 8.14 -2.39 -0.02 -0.16 16 27 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 28 H 0.10 3.91 6.43 -2.39 -0.02 3.89 16 29 H 0.05 2.49 7.35 -2.39 -0.02 2.47 16 30 H 0.08 1.93 8.13 -2.38 -0.02 1.91 16 31 H 0.13 2.09 4.96 -2.39 -0.01 2.08 16 32 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 33 H 0.06 0.80 6.39 -2.39 -0.02 0.79 16 34 H 0.40 4.57 9.12 -74.05 -0.68 3.90 16 35 H 0.15 1.92 3.77 -2.91 -0.01 1.91 16 36 H 0.17 0.55 8.06 -2.91 -0.02 0.52 16 37 H 0.16 0.64 8.06 -2.91 -0.02 0.62 16 38 H 0.15 1.64 8.06 -2.91 -0.02 1.61 16 39 H 0.11 2.98 8.06 -2.91 -0.02 2.95 16 Total: -1.00 -84.34 325.81 1.05 -83.28 By element: Atomic # 1 Polarization: 27.55 SS G_CDS: -0.30 Total: 27.25 kcal Atomic # 6 Polarization: 2.29 SS G_CDS: 4.85 Total: 7.14 kcal Atomic # 7 Polarization: -123.43 SS G_CDS: -3.69 Total: -127.11 kcal Atomic # 8 Polarization: -39.00 SS G_CDS: -1.83 Total: -40.83 kcal Atomic # 14 Polarization: 48.24 SS G_CDS: 2.03 Total: 50.27 kcal Total: -84.34 1.05 -83.28 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001672576356.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.485 kcal (2) G-P(sol) polarization free energy of solvation -84.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.282 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds