Wall clock time and date at job start Tue Mar 31 2020 00:33:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86806 * 119.99912 * 2 1 4 4 H 1.48499 * 109.47145 * 269.99845 * 3 2 1 5 5 H 1.48500 * 109.46952 * 30.00275 * 3 2 1 6 6 H 1.48505 * 109.46837 * 149.99970 * 3 2 1 7 7 C 1.38807 * 120.00279 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00016 * 160.27758 * 7 2 1 9 9 N 1.36942 * 120.00026 * 340.28489 * 7 2 1 10 10 C 1.46501 * 119.99665 * 320.53656 * 9 7 2 11 11 C 1.53003 * 109.46806 * 269.99530 * 10 9 7 12 12 C 1.52995 * 109.47175 * 180.02562 * 11 10 9 13 13 N 1.46498 * 109.47352 * 180.02562 * 12 11 10 14 14 C 1.34777 * 120.00074 * 180.02562 * 13 12 11 15 15 O 1.21615 * 120.00152 * 359.97438 * 14 13 12 16 16 C 1.47383 * 119.99718 * 180.02562 * 14 13 12 17 17 C 1.47019 * 127.19126 * 180.02562 * 16 14 13 18 18 C 1.34177 * 105.95369 * 179.97438 * 17 16 14 19 19 O 1.34209 * 109.12427 * 359.97438 * 18 17 16 20 20 C 1.33656 * 110.91014 * 359.72812 * 19 18 17 21 21 C 1.46502 * 120.00134 * 140.52741 * 9 7 2 22 22 C 1.52995 * 117.49922 * 3.29552 * 21 9 7 23 23 C 1.52995 * 117.50225 * 294.66994 * 21 9 7 24 24 H 0.97008 * 119.99846 * 355.01798 * 1 2 3 25 25 H 1.09004 * 109.46988 * 149.99775 * 10 9 7 26 26 H 1.08993 * 109.47151 * 29.99562 * 10 9 7 27 27 H 1.09000 * 109.46792 * 300.00382 * 11 10 9 28 28 H 1.09004 * 109.47147 * 60.00342 * 11 10 9 29 29 H 1.09004 * 109.47213 * 300.00554 * 12 11 10 30 30 H 1.09004 * 109.46808 * 60.00129 * 12 11 10 31 31 H 0.97001 * 120.00131 * 359.97438 * 13 12 11 32 32 H 1.08007 * 127.02274 * 359.97438 * 17 16 14 33 33 H 1.08001 * 125.43170 * 179.97438 * 18 17 16 34 34 H 1.07994 * 125.80118 * 180.28326 * 20 19 18 35 35 H 1.09002 * 115.54468 * 148.99747 * 21 9 7 36 36 H 1.09005 * 117.50099 * 359.97438 * 22 21 9 37 37 H 1.08996 * 117.50293 * 145.01784 * 22 21 9 38 38 H 1.08995 * 117.49969 * 214.97802 * 23 21 9 39 39 H 1.09000 * 117.50207 * 359.97438 * 23 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4476 2.6527 0.7001 6 1 3.5478 1.4402 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0428 -1.2296 -0.3151 9 7 1.3858 -2.3531 0.4011 10 6 0.4640 -2.3282 1.5395 11 6 1.2392 -2.6032 2.8296 12 6 0.2765 -2.5779 4.0183 13 7 1.0188 -2.8406 5.2537 14 6 0.3720 -2.8675 6.4358 15 8 -0.8278 -2.6731 6.4771 16 6 1.1190 -3.1312 7.6786 17 6 0.5777 -3.1967 9.0440 18 6 1.6231 -3.4599 9.8429 19 8 2.7335 -3.5591 9.0957 20 6 2.4559 -3.3729 7.8017 21 6 1.6395 -3.6093 -0.3088 22 6 2.6699 -3.5861 -1.4394 23 6 1.1796 -3.7032 -1.7649 24 1 -0.4850 0.8370 0.0730 25 1 -0.3004 -3.0935 1.4047 26 1 -0.0097 -1.3486 1.6020 27 1 1.7129 -3.5829 2.7669 28 1 2.0036 -1.8379 2.9643 29 1 -0.1977 -1.5984 4.0811 30 1 -0.4877 -3.3435 3.8834 31 1 1.9757 -2.9960 5.2208 32 1 -0.4513 -3.0607 9.3428 33 1 1.5779 -3.5738 10.9160 34 1 3.1693 -3.4050 6.9915 35 1 1.5777 -4.5128 0.2979 36 1 3.1589 -2.6361 -1.6555 37 1 3.2864 -4.4744 -1.5769 38 1 0.8155 -4.6686 -2.1164 39 1 0.6878 -2.8306 -2.1947 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001689975960.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:33:52 Heat of formation + Delta-G solvation = 21.145112 kcal Electronic energy + Delta-G solvation = -20859.788340 eV Core-core repulsion = 17577.661009 eV Total energy + Delta-G solvation = -3282.127332 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.71928 -39.26225 -37.12160 -35.26955 -33.60106 -33.01906 -31.63886 -30.21552 -29.11954 -25.60079 -24.07958 -22.73765 -21.67198 -21.41604 -20.99243 -20.08093 -19.60936 -18.43254 -16.43632 -16.35099 -16.17198 -15.65233 -15.36441 -15.10548 -14.85679 -14.55640 -14.01497 -13.46158 -13.36094 -13.10942 -12.65565 -12.63039 -12.16513 -11.92699 -11.53776 -11.03528 -10.82934 -10.75074 -10.67233 -10.23759 -10.16378 -9.99400 -9.87860 -9.64327 -9.57794 -9.26320 -9.07774 -8.83909 -8.49555 -6.55106 -5.80783 -3.48204 1.19527 1.89807 2.70285 3.27254 3.32481 3.39759 3.40379 3.41845 4.39007 4.41555 4.52386 4.91459 4.93915 5.15605 5.30831 5.31603 5.45808 5.63104 5.65932 5.78677 5.91375 5.99069 6.07565 6.12834 6.27191 6.35442 6.36966 6.49774 6.65113 6.65725 6.72200 6.74625 7.03803 7.08246 7.24291 7.60302 7.62368 7.76964 8.31245 8.47352 9.12949 9.73884 10.32652 11.13880 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.019019 B = 0.003624 C = 0.003378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1471.865168 B = 7724.098845 C = 8287.440779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.016 3.984 3 Si 0.894 3.106 4 H -0.285 1.285 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.263 4.263 8 H 0.063 0.937 9 N -0.552 5.552 10 C 0.155 3.845 11 C -0.146 4.146 12 C 0.122 3.878 13 N -0.721 5.721 14 C 0.580 3.420 15 O -0.539 6.539 16 C -0.230 4.230 17 C -0.166 4.166 18 C -0.044 4.044 19 O -0.176 6.176 20 C 0.018 3.982 21 C 0.120 3.880 22 C -0.196 4.196 23 C -0.221 4.221 24 H 0.255 0.745 25 H 0.029 0.971 26 H 0.096 0.904 27 H 0.050 0.950 28 H 0.066 0.934 29 H 0.069 0.931 30 H 0.064 0.936 31 H 0.396 0.604 32 H 0.159 0.841 33 H 0.208 0.792 34 H 0.212 0.788 35 H 0.085 0.915 36 H 0.096 0.904 37 H 0.073 0.927 38 H 0.068 0.932 39 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.096 -7.810 14.817 17.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.185 4.185 3 Si 0.723 3.277 4 H -0.212 1.212 5 H -0.214 1.214 6 H -0.203 1.203 7 C -0.392 4.392 8 H 0.081 0.919 9 N -0.268 5.268 10 C 0.028 3.972 11 C -0.186 4.186 12 C -0.002 4.002 13 N -0.372 5.372 14 C 0.367 3.633 15 O -0.418 6.418 16 C -0.235 4.235 17 C -0.185 4.185 18 C -0.110 4.110 19 O -0.071 6.071 20 C -0.053 4.053 21 C 0.012 3.988 22 C -0.234 4.234 23 C -0.262 4.262 24 H 0.066 0.934 25 H 0.048 0.952 26 H 0.113 0.887 27 H 0.069 0.931 28 H 0.085 0.915 29 H 0.087 0.913 30 H 0.083 0.917 31 H 0.230 0.770 32 H 0.177 0.823 33 H 0.225 0.775 34 H 0.228 0.772 35 H 0.103 0.897 36 H 0.115 0.885 37 H 0.091 0.909 38 H 0.087 0.913 39 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 4.351 -7.551 14.891 17.253 hybrid contribution 0.687 0.859 -0.194 1.117 sum 5.038 -6.692 14.697 16.916 Atomic orbital electron populations 1.70055 1.05531 1.26277 1.50403 1.25245 0.94982 0.98796 0.99458 0.86464 0.79555 0.83782 0.77912 1.21160 1.21402 1.20266 1.18998 0.93275 0.85071 1.41870 0.91945 1.43349 1.50948 1.03110 1.29419 1.20754 0.90516 1.02748 0.83210 1.22466 0.99249 1.01294 0.95624 1.21492 0.95144 1.01546 0.81986 1.46022 1.11926 1.72439 1.06811 1.17308 0.86725 0.76980 0.82329 1.90787 1.14377 1.49675 1.86918 1.21668 0.93938 1.12687 0.95207 1.22815 1.00685 1.04552 0.90471 1.23934 0.83056 1.06572 0.97453 1.83786 1.36098 1.69736 1.17504 1.24490 0.96212 1.00147 0.84418 1.21232 1.00586 0.90615 0.86417 1.23010 0.92195 1.01728 1.06475 1.23341 0.96793 1.00925 1.05178 0.93450 0.95236 0.88670 0.93085 0.91482 0.91284 0.91741 0.77027 0.82332 0.77542 0.77161 0.89708 0.88533 0.90887 0.91330 0.89006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.62 11.50 55.49 0.64 -23.98 16 2 C 0.02 0.43 4.98 -17.43 -0.09 0.35 16 3 Si 0.89 20.92 29.60 -169.99 -5.03 15.88 16 4 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 5 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 6 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 7 C -0.26 -6.82 8.47 -15.06 -0.13 -6.95 16 8 H 0.06 1.63 6.75 -52.49 -0.35 1.28 16 9 N -0.55 -13.09 2.75 -165.66 -0.46 -13.55 16 10 C 0.15 3.38 5.33 -4.04 -0.02 3.36 16 11 C -0.15 -2.56 5.65 -26.73 -0.15 -2.71 16 12 C 0.12 1.98 5.67 -4.05 -0.02 1.96 16 13 N -0.72 -9.93 5.55 -61.40 -0.34 -10.27 16 14 C 0.58 8.90 7.81 -12.54 -0.10 8.80 16 15 O -0.54 -10.46 16.98 5.26 0.09 -10.37 16 16 C -0.23 -2.82 6.31 -103.28 -0.65 -3.47 16 17 C -0.17 -1.79 11.01 -37.46 -0.41 -2.20 16 18 C -0.04 -0.36 12.03 29.30 0.35 -0.01 16 19 O -0.18 -1.62 10.52 7.66 0.08 -1.54 16 20 C 0.02 0.16 11.61 30.07 0.35 0.51 16 21 C 0.12 2.52 6.56 -67.93 -0.45 2.07 16 22 C -0.20 -3.81 9.80 -26.73 -0.26 -4.07 16 23 C -0.22 -4.51 10.36 -26.73 -0.28 -4.79 16 24 H 0.26 6.93 8.32 -40.82 -0.34 6.59 16 25 H 0.03 0.62 8.07 -51.93 -0.42 0.21 16 26 H 0.10 2.39 5.59 -51.93 -0.29 2.10 16 27 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 28 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 29 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 30 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 31 H 0.40 4.20 7.44 -40.82 -0.30 3.89 16 32 H 0.16 1.62 8.06 -52.48 -0.42 1.20 16 33 H 0.21 0.83 8.06 -52.49 -0.42 0.41 16 34 H 0.21 1.15 7.47 -52.49 -0.39 0.76 16 35 H 0.09 1.59 8.14 -51.93 -0.42 1.16 16 36 H 0.10 2.05 6.46 -51.93 -0.34 1.72 16 37 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 38 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 39 H 0.09 2.16 8.14 -51.93 -0.42 1.73 16 LS Contribution 335.19 15.07 5.05 5.05 Total: -1.00 -32.00 335.19 -7.28 -39.28 By element: Atomic # 1 Polarization: 12.11 SS G_CDS: -5.46 Total: 6.65 kcal Atomic # 6 Polarization: -5.30 SS G_CDS: -1.86 Total: -7.16 kcal Atomic # 7 Polarization: -47.64 SS G_CDS: -0.16 Total: -47.79 kcal Atomic # 8 Polarization: -12.08 SS G_CDS: 0.17 Total: -11.91 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.03 Total: 15.88 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -32.00 -7.28 -39.28 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001689975960.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.423 kcal (2) G-P(sol) polarization free energy of solvation -31.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.278 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds