Wall clock time and date at job start Tue Mar 31 2020 00:33:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86806 * 119.99912 * 2 1 4 4 H 1.48499 * 109.47145 * 269.99845 * 3 2 1 5 5 H 1.48500 * 109.46952 * 30.00275 * 3 2 1 6 6 H 1.48505 * 109.46837 * 149.99970 * 3 2 1 7 7 C 1.38807 * 120.00279 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00016 * 160.27758 * 7 2 1 9 9 N 1.36942 * 120.00026 * 340.28489 * 7 2 1 10 10 C 1.46501 * 119.99665 * 320.53656 * 9 7 2 11 11 C 1.53003 * 109.46806 * 269.99530 * 10 9 7 12 12 C 1.52995 * 109.47175 * 180.02562 * 11 10 9 13 13 N 1.46498 * 109.47352 * 180.02562 * 12 11 10 14 14 C 1.34777 * 120.00074 * 180.02562 * 13 12 11 15 15 O 1.21615 * 120.00152 * 359.97438 * 14 13 12 16 16 C 1.47383 * 119.99718 * 180.02562 * 14 13 12 17 17 C 1.47019 * 127.19126 * 180.02562 * 16 14 13 18 18 C 1.34177 * 105.95369 * 179.97438 * 17 16 14 19 19 O 1.34209 * 109.12427 * 359.97438 * 18 17 16 20 20 C 1.33656 * 110.91014 * 359.72812 * 19 18 17 21 21 C 1.46502 * 120.00134 * 140.52741 * 9 7 2 22 22 C 1.52995 * 117.49922 * 3.29552 * 21 9 7 23 23 C 1.52995 * 117.50225 * 294.66994 * 21 9 7 24 24 H 0.97008 * 119.99846 * 355.01798 * 1 2 3 25 25 H 1.09004 * 109.46988 * 149.99775 * 10 9 7 26 26 H 1.08993 * 109.47151 * 29.99562 * 10 9 7 27 27 H 1.09000 * 109.46792 * 300.00382 * 11 10 9 28 28 H 1.09004 * 109.47147 * 60.00342 * 11 10 9 29 29 H 1.09004 * 109.47213 * 300.00554 * 12 11 10 30 30 H 1.09004 * 109.46808 * 60.00129 * 12 11 10 31 31 H 0.97001 * 120.00131 * 359.97438 * 13 12 11 32 32 H 1.08007 * 127.02274 * 359.97438 * 17 16 14 33 33 H 1.08001 * 125.43170 * 179.97438 * 18 17 16 34 34 H 1.07994 * 125.80118 * 180.28326 * 20 19 18 35 35 H 1.09002 * 115.54468 * 148.99747 * 21 9 7 36 36 H 1.09005 * 117.50099 * 359.97438 * 22 21 9 37 37 H 1.08996 * 117.50293 * 145.01784 * 22 21 9 38 38 H 1.08995 * 117.49969 * 214.97802 * 23 21 9 39 39 H 1.09000 * 117.50207 * 359.97438 * 23 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4476 2.6527 0.7001 6 1 3.5478 1.4402 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0428 -1.2296 -0.3151 9 7 1.3858 -2.3531 0.4011 10 6 0.4640 -2.3282 1.5395 11 6 1.2392 -2.6032 2.8296 12 6 0.2765 -2.5779 4.0183 13 7 1.0188 -2.8406 5.2537 14 6 0.3720 -2.8675 6.4358 15 8 -0.8278 -2.6731 6.4771 16 6 1.1190 -3.1312 7.6786 17 6 0.5777 -3.1967 9.0440 18 6 1.6231 -3.4599 9.8429 19 8 2.7335 -3.5591 9.0957 20 6 2.4559 -3.3729 7.8017 21 6 1.6395 -3.6093 -0.3088 22 6 2.6699 -3.5861 -1.4394 23 6 1.1796 -3.7032 -1.7649 24 1 -0.4850 0.8370 0.0730 25 1 -0.3004 -3.0935 1.4047 26 1 -0.0097 -1.3486 1.6020 27 1 1.7129 -3.5829 2.7669 28 1 2.0036 -1.8379 2.9643 29 1 -0.1977 -1.5984 4.0811 30 1 -0.4877 -3.3435 3.8834 31 1 1.9757 -2.9960 5.2208 32 1 -0.4513 -3.0607 9.3428 33 1 1.5779 -3.5738 10.9160 34 1 3.1693 -3.4050 6.9915 35 1 1.5777 -4.5128 0.2979 36 1 3.1589 -2.6361 -1.6555 37 1 3.2864 -4.4744 -1.5769 38 1 0.8155 -4.6686 -2.1164 39 1 0.6878 -2.8306 -2.1947 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001689975960.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:33:51 Heat of formation + Delta-G solvation = 0.438358 kcal Electronic energy + Delta-G solvation = -20860.686253 eV Core-core repulsion = 17577.661009 eV Total energy + Delta-G solvation = -3283.025244 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -43.46024 -40.49404 -38.82453 -36.67844 -35.26112 -33.98264 -33.23786 -31.43831 -30.37836 -27.26819 -25.60897 -23.99283 -23.01821 -22.57350 -22.29214 -21.53505 -20.96108 -19.32869 -18.25015 -17.31326 -17.18110 -17.10666 -16.77524 -16.45856 -16.31608 -15.71891 -15.60637 -14.96321 -14.57718 -14.26868 -13.95648 -13.83761 -13.63629 -13.33997 -13.21443 -12.78142 -12.57399 -12.45862 -12.28156 -12.03537 -11.86246 -11.41921 -11.28608 -11.18374 -10.86598 -10.86410 -10.47282 -10.17077 -9.72305 -8.48378 -7.77440 -5.50071 0.36091 1.13858 1.43969 1.47564 1.55712 1.99940 2.19277 2.31430 2.49842 3.17644 3.42489 3.52555 3.64319 3.79180 4.10089 4.18184 4.30495 4.34549 4.47893 4.54979 4.58350 4.61284 4.76715 4.76966 4.94519 4.97075 5.02364 5.09422 5.12831 5.32924 5.38633 5.40046 5.48419 5.57786 5.69293 5.83557 5.99567 6.48021 6.53161 7.16886 7.18408 7.85997 8.38088 9.11570 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.019019 B = 0.003624 C = 0.003378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1471.865168 B = 7724.098845 C = 8287.440779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.033 4.033 3 Si 0.950 3.050 4 H -0.287 1.287 5 H -0.294 1.294 6 H -0.266 1.266 7 C -0.260 4.260 8 H 0.061 0.939 9 N -0.569 5.569 10 C 0.153 3.847 11 C -0.121 4.121 12 C 0.134 3.866 13 N -0.708 5.708 14 C 0.578 3.422 15 O -0.592 6.592 16 C -0.271 4.271 17 C -0.201 4.201 18 C -0.020 4.020 19 O -0.175 6.175 20 C 0.047 3.953 21 C 0.103 3.897 22 C -0.179 4.179 23 C -0.224 4.224 24 H 0.249 0.751 25 H 0.030 0.970 26 H 0.059 0.941 27 H 0.074 0.926 28 H 0.058 0.942 29 H 0.044 0.956 30 H 0.061 0.939 31 H 0.414 0.586 32 H 0.152 0.848 33 H 0.250 0.750 34 H 0.248 0.752 35 H 0.115 0.885 36 H 0.073 0.927 37 H 0.112 0.888 38 H 0.099 0.901 39 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.821 -9.507 16.123 20.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.230 4.230 3 Si 0.778 3.222 4 H -0.214 1.214 5 H -0.221 1.221 6 H -0.191 1.191 7 C -0.390 4.390 8 H 0.078 0.922 9 N -0.286 5.286 10 C 0.027 3.973 11 C -0.161 4.161 12 C 0.009 3.991 13 N -0.360 5.360 14 C 0.368 3.632 15 O -0.474 6.474 16 C -0.276 4.276 17 C -0.221 4.221 18 C -0.086 4.086 19 O -0.070 6.070 20 C -0.024 4.024 21 C -0.005 4.005 22 C -0.217 4.217 23 C -0.265 4.265 24 H 0.059 0.941 25 H 0.048 0.952 26 H 0.077 0.923 27 H 0.093 0.907 28 H 0.076 0.924 29 H 0.062 0.938 30 H 0.079 0.921 31 H 0.251 0.749 32 H 0.170 0.830 33 H 0.265 0.735 34 H 0.264 0.736 35 H 0.133 0.867 36 H 0.092 0.908 37 H 0.130 0.870 38 H 0.118 0.882 39 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 7.138 -9.274 16.201 19.986 hybrid contribution -0.141 1.308 -0.601 1.447 sum 6.997 -7.966 15.599 18.861 Atomic orbital electron populations 1.70190 1.06849 1.26375 1.52433 1.25884 0.95525 1.01501 1.00130 0.85575 0.78725 0.80359 0.77548 1.21375 1.22071 1.19054 1.19187 0.93224 0.86109 1.40500 0.92179 1.43564 1.50971 1.03611 1.30480 1.20657 0.90898 1.00842 0.84909 1.22095 0.98310 1.02084 0.93612 1.21155 0.94952 1.00174 0.82808 1.45777 1.12688 1.71857 1.05639 1.17783 0.86300 0.75754 0.83393 1.90752 1.16742 1.52245 1.87686 1.21533 0.95455 1.16256 0.94309 1.22967 1.01505 1.06927 0.90669 1.24613 0.81621 1.03616 0.98726 1.83845 1.36358 1.69224 1.17535 1.25071 0.95380 0.96795 0.85156 1.21570 1.01675 0.90384 0.86860 1.23013 0.91755 1.02288 1.04607 1.23254 0.97671 1.00761 1.04771 0.94127 0.95185 0.92270 0.90739 0.92366 0.93768 0.92088 0.74868 0.82999 0.73454 0.73574 0.86742 0.90809 0.86977 0.88223 0.93112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.96 11.50 21.65 0.25 -52.71 16 2 C -0.03 -1.76 4.98 84.86 0.42 -1.34 16 3 Si 0.95 43.66 29.60 68.60 2.03 45.69 16 4 H -0.29 -13.17 7.11 99.48 0.71 -12.46 16 5 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 6 H -0.27 -11.59 7.11 99.48 0.71 -10.89 16 7 C -0.26 -13.56 8.47 84.03 0.71 -12.85 16 8 H 0.06 3.13 6.75 -2.91 -0.02 3.11 16 9 N -0.57 -26.86 2.75 -678.04 -1.86 -28.73 16 10 C 0.15 6.79 5.33 86.38 0.46 7.25 16 11 C -0.12 -4.14 5.65 30.59 0.17 -3.96 16 12 C 0.13 4.37 5.67 86.38 0.49 4.86 16 13 N -0.71 -18.85 5.55 -466.41 -2.59 -21.44 16 14 C 0.58 17.82 7.81 86.65 0.68 18.49 16 15 O -0.59 -23.94 16.98 -4.08 -0.07 -24.01 16 16 C -0.27 -6.34 6.31 -18.99 -0.12 -6.46 16 17 C -0.20 -4.17 11.01 23.65 0.26 -3.91 16 18 C -0.02 -0.27 12.03 66.89 0.80 0.53 16 19 O -0.18 -2.60 10.52 4.49 0.05 -2.55 16 20 C 0.05 0.71 11.61 67.39 0.78 1.49 16 21 C 0.10 4.12 6.56 44.99 0.30 4.41 16 22 C -0.18 -6.53 9.80 30.59 0.30 -6.23 16 23 C -0.22 -8.84 10.36 30.59 0.32 -8.52 16 24 H 0.25 14.11 8.32 -92.70 -0.77 13.34 16 25 H 0.03 1.29 8.07 -2.39 -0.02 1.27 16 26 H 0.06 3.10 5.59 -2.39 -0.01 3.08 16 27 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 28 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 29 H 0.04 1.67 8.14 -2.38 -0.02 1.65 16 30 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 31 H 0.41 7.78 7.44 -92.71 -0.69 7.09 16 32 H 0.15 3.21 8.06 -2.91 -0.02 3.19 16 33 H 0.25 0.96 8.06 -2.91 -0.02 0.94 16 34 H 0.25 1.60 7.47 -2.91 -0.02 1.57 16 35 H 0.12 3.88 8.14 -2.39 -0.02 3.86 16 36 H 0.07 3.05 6.46 -2.38 -0.02 3.04 16 37 H 0.11 3.24 8.14 -2.39 -0.02 3.22 16 38 H 0.10 3.28 8.14 -2.39 -0.02 3.26 16 39 H 0.05 2.42 8.14 -2.39 -0.02 2.40 16 Total: -1.00 -72.75 335.19 3.75 -69.00 By element: Atomic # 1 Polarization: 20.62 SS G_CDS: 0.37 Total: 20.99 kcal Atomic # 6 Polarization: -11.81 SS G_CDS: 5.57 Total: -6.24 kcal Atomic # 7 Polarization: -98.67 SS G_CDS: -4.20 Total: -102.88 kcal Atomic # 8 Polarization: -26.54 SS G_CDS: -0.02 Total: -26.56 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 2.03 Total: 45.69 kcal Total: -72.75 3.75 -69.00 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001689975960.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.439 kcal (2) G-P(sol) polarization free energy of solvation -72.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.000 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds