Wall clock time and date at job start Tue Mar 31 2020 00:18:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 120.00259 * 2 1 4 4 H 1.48501 * 109.47055 * 0.02562 * 3 2 1 5 5 H 1.48505 * 109.46653 * 119.99764 * 3 2 1 6 6 H 1.48495 * 109.47483 * 240.00126 * 3 2 1 7 7 C 1.38816 * 119.99569 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99460 * 180.02562 * 7 2 1 9 9 N 1.36935 * 120.00401 * 0.02562 * 7 2 1 10 10 C 1.46490 * 120.00121 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.47264 * 179.97438 * 10 9 7 12 12 H 1.09007 * 110.88434 * 51.11772 * 11 10 9 13 13 C 1.55155 * 111.00412 * 287.19518 * 11 10 9 14 14 C 1.54327 * 102.94065 * 206.41899 * 13 11 10 15 15 N 1.47025 * 107.27126 * 22.19595 * 14 13 11 16 16 C 1.34777 * 125.65018 * 181.09053 * 15 14 13 17 17 O 1.21273 * 120.00178 * 179.97438 * 16 15 14 18 18 C 1.50702 * 119.99376 * 359.95742 * 16 15 14 19 19 C 1.50703 * 109.46717 * 179.97438 * 18 16 15 20 20 C 1.34511 * 125.78823 * 89.71465 * 19 18 16 21 21 C 1.41383 * 106.84411 * 179.89038 * 20 19 18 22 22 C 1.34514 * 106.83773 * 0.37732 * 21 20 19 23 23 O 1.34300 * 108.41923 * 359.76630 * 22 21 20 24 24 C 1.47425 * 108.70149 * 1.05494 * 15 14 13 25 25 H 0.97001 * 119.99885 * 179.97438 * 1 2 3 26 26 H 0.97000 * 119.99302 * 359.97438 * 9 7 2 27 27 H 1.09003 * 109.47433 * 299.99456 * 10 9 7 28 28 H 1.08999 * 109.47686 * 59.99159 * 10 9 7 29 29 H 1.08996 * 110.71895 * 324.78612 * 13 11 10 30 30 H 1.09001 * 110.72006 * 88.05773 * 13 11 10 31 31 H 1.09000 * 109.88574 * 262.77402 * 14 13 11 32 32 H 1.09001 * 110.00464 * 141.68047 * 14 13 11 33 33 H 1.08991 * 109.47628 * 299.99386 * 18 16 15 34 34 H 1.09004 * 109.47361 * 60.00359 * 18 16 15 35 35 H 1.08001 * 126.58000 * 0.03051 * 20 19 18 36 36 H 1.07999 * 126.58285 * 180.12542 * 21 20 19 37 37 H 1.08001 * 125.78931 * 179.75169 * 22 21 20 38 38 H 1.09001 * 110.36548 * 217.02965 * 24 15 14 39 39 H 1.09001 * 110.46206 * 94.75830 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 1.2853 2.7465 0.0006 5 1 3.1040 1.6962 1.2126 6 1 3.1040 1.6964 -1.2124 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3256 -2.3881 -0.0016 10 6 2.0580 -3.6568 -0.0016 11 6 1.0637 -4.8197 -0.0022 12 1 0.3256 -4.6995 -0.7953 13 6 0.3763 -4.9645 1.3812 14 6 0.0006 -6.4606 1.4255 15 7 0.8814 -7.1602 0.4788 16 6 0.8550 -8.4806 0.2099 17 8 1.6319 -8.9516 -0.5934 18 6 -0.1399 -9.3717 0.9079 19 6 0.0373 -10.7910 0.4329 20 6 0.8543 -11.7079 0.9817 21 6 0.7049 -12.8939 0.2266 22 6 -0.1882 -12.6282 -0.7435 23 8 -0.5892 -11.3531 -0.6136 24 6 1.7979 -6.1779 -0.1284 25 1 -0.4850 -0.8401 -0.0004 26 1 0.3556 -2.3880 -0.0016 27 1 2.6853 -3.7142 -0.8912 28 1 2.6841 -3.7150 0.8887 29 1 1.0704 -4.7171 2.1844 30 1 -0.5161 -4.3409 1.4355 31 1 -1.0402 -6.5905 1.1288 32 1 0.1510 -6.8532 2.4312 33 1 0.0236 -9.3256 1.9845 34 1 -1.1515 -9.0361 0.6792 35 1 1.4989 -11.5661 1.8365 36 1 1.2135 -13.8318 0.3939 37 1 -0.5255 -13.3225 -1.4989 38 1 1.9720 -6.4192 -1.1770 39 1 2.7421 -6.1507 0.4156 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001690745304.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:18:51 Heat of formation + Delta-G solvation = -6.846554 kcal Electronic energy + Delta-G solvation = -20850.318076 eV Core-core repulsion = 17566.976934 eV Total energy + Delta-G solvation = -3283.341141 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.74585 -40.10512 -37.76933 -34.97228 -33.39685 -32.73641 -31.99168 -30.17408 -29.11650 -27.39228 -24.96098 -23.15666 -22.59502 -21.94729 -20.92807 -20.18532 -19.38318 -17.53295 -17.49922 -17.20255 -16.44369 -16.01742 -15.51918 -14.86598 -14.55204 -14.26462 -13.88049 -13.74266 -13.44472 -13.18621 -13.01353 -12.90791 -12.79742 -12.65241 -12.50561 -11.98370 -11.82332 -11.04545 -10.84562 -10.69765 -10.54362 -10.44347 -10.11336 -10.04185 -9.98722 -9.20443 -8.91058 -8.74084 -8.65951 -7.03861 -6.13158 -3.13057 1.49946 2.39236 2.46093 2.69897 3.02694 3.50845 3.54267 3.71662 4.25978 4.37579 4.61430 4.63573 4.70983 4.80558 4.84015 4.93645 5.00627 5.05455 5.19659 5.34403 5.50481 5.59190 5.60491 5.71188 5.79628 5.86787 5.89590 5.90435 5.91243 6.08669 6.20828 6.29409 6.31130 6.61324 6.71748 6.93770 7.37890 7.78376 8.00135 8.73283 9.19773 10.06118 10.20714 11.35489 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.061473 B = 0.002662 C = 0.002631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 455.377221 B =10516.280761 C =10638.521770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.944 5.944 2 C -0.045 4.045 3 Si 1.080 2.920 4 H -0.285 1.285 5 H -0.295 1.295 6 H -0.295 1.295 7 C -0.332 4.332 8 H 0.065 0.935 9 N -0.742 5.742 10 C 0.170 3.830 11 C -0.108 4.108 12 H 0.084 0.916 13 C -0.121 4.121 14 C 0.096 3.904 15 N -0.616 5.616 16 C 0.528 3.472 17 O -0.533 6.533 18 C -0.057 4.057 19 C 0.006 3.994 20 C -0.197 4.197 21 C -0.214 4.214 22 C -0.039 4.039 23 O -0.172 6.172 24 C 0.114 3.886 25 H 0.254 0.746 26 H 0.367 0.633 27 H 0.023 0.977 28 H 0.024 0.976 29 H 0.080 0.920 30 H 0.085 0.915 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.123 0.877 34 H 0.111 0.889 35 H 0.146 0.854 36 H 0.148 0.852 37 H 0.202 0.798 38 H 0.078 0.922 39 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.158 -23.161 4.224 23.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.590 5.590 2 C -0.243 4.243 3 Si 0.911 3.089 4 H -0.210 1.210 5 H -0.222 1.222 6 H -0.222 1.222 7 C -0.463 4.463 8 H 0.083 0.917 9 N -0.388 5.388 10 C 0.042 3.958 11 C -0.127 4.127 12 H 0.102 0.898 13 C -0.159 4.159 14 C -0.026 4.026 15 N -0.351 5.351 16 C 0.315 3.685 17 O -0.409 6.409 18 C -0.097 4.097 19 C -0.044 4.044 20 C -0.216 4.216 21 C -0.233 4.233 22 C -0.107 4.107 23 O -0.068 6.068 24 C -0.008 4.008 25 H 0.065 0.935 26 H 0.200 0.800 27 H 0.041 0.959 28 H 0.042 0.958 29 H 0.099 0.901 30 H 0.104 0.896 31 H 0.087 0.913 32 H 0.088 0.912 33 H 0.141 0.859 34 H 0.130 0.870 35 H 0.164 0.836 36 H 0.165 0.835 37 H 0.219 0.781 38 H 0.096 0.904 39 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -1.862 -21.680 3.597 22.056 hybrid contribution 0.070 -1.882 0.112 1.886 sum -1.792 -23.562 3.710 23.919 Atomic orbital electron populations 1.70896 1.06030 1.28343 1.53698 1.25791 0.97059 1.01021 1.00411 0.83236 0.74217 0.75552 0.75895 1.21021 1.22247 1.22240 1.20029 0.92065 0.85769 1.48406 0.91738 1.42312 1.04850 1.00820 1.90811 1.20482 0.92634 0.84344 0.98332 1.22600 0.98679 0.93899 0.97537 0.89764 1.22660 1.02061 0.93080 0.98121 1.22195 0.94103 0.93706 0.92636 1.48515 1.36858 1.06479 1.43246 1.19991 0.84769 0.80990 0.82708 1.90746 1.41519 1.73675 1.34957 1.20067 1.01092 0.86945 1.01549 1.21497 0.98121 0.94925 0.89895 1.21524 1.02720 0.93403 1.03951 1.21797 1.02913 1.00136 0.98450 1.24002 1.00600 0.83808 1.02246 1.83988 1.55940 1.24369 1.42512 1.22248 0.92734 0.86731 0.99125 0.93459 0.79993 0.95907 0.95826 0.90118 0.89620 0.91262 0.91249 0.85913 0.87037 0.83596 0.83461 0.78111 0.90368 0.91050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -28.87 13.70 55.49 0.76 -28.11 16 2 C -0.05 -1.31 5.50 -17.43 -0.10 -1.41 16 3 Si 1.08 25.74 29.92 -169.99 -5.09 20.65 16 4 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 5 H -0.30 -6.70 7.11 56.52 0.40 -6.30 16 6 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 7 C -0.33 -9.30 9.99 -15.06 -0.15 -9.45 16 8 H 0.06 1.78 7.83 -52.49 -0.41 1.37 16 9 N -0.74 -18.23 5.55 -59.91 -0.33 -18.57 16 10 C 0.17 3.31 5.71 -4.05 -0.02 3.28 16 11 C -0.11 -1.63 3.05 -88.47 -0.27 -1.90 16 12 H 0.08 1.35 8.14 -51.92 -0.42 0.92 16 13 C -0.12 -1.56 6.37 -24.90 -0.16 -1.72 16 14 C 0.10 0.97 6.49 -3.06 -0.02 0.95 16 15 N -0.62 -7.76 3.33 -170.52 -0.57 -8.33 16 16 C 0.53 7.08 7.84 -10.98 -0.09 6.99 16 17 O -0.53 -9.42 16.29 5.56 0.09 -9.33 16 18 C -0.06 -0.54 5.43 -29.03 -0.16 -0.70 16 19 C 0.01 0.07 5.81 -35.62 -0.21 -0.13 16 20 C -0.20 -2.15 10.81 -39.70 -0.43 -2.58 16 21 C -0.21 -2.10 10.91 -39.70 -0.43 -2.53 16 22 C -0.04 -0.37 12.09 29.42 0.36 -0.02 16 23 O -0.17 -2.12 10.65 5.72 0.06 -2.05 16 24 C 0.11 1.61 6.38 -2.53 -0.02 1.59 16 25 H 0.25 7.59 6.77 -40.82 -0.28 7.31 16 26 H 0.37 9.10 6.50 -40.82 -0.27 8.84 16 27 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.02 0.47 7.97 -51.93 -0.41 0.05 16 29 H 0.08 1.07 7.91 -51.93 -0.41 0.66 16 30 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 31 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.12 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.11 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.15 1.34 8.06 -52.49 -0.42 0.92 16 36 H 0.15 1.08 8.06 -52.49 -0.42 0.65 16 37 H 0.20 1.12 8.06 -52.49 -0.42 0.70 16 38 H 0.08 1.18 8.04 -51.93 -0.42 0.76 16 39 H 0.07 0.99 8.03 -51.93 -0.42 0.57 16 LS Contribution 331.34 15.07 4.99 4.99 Total: -1.00 -35.46 331.34 -7.41 -42.86 By element: Atomic # 1 Polarization: 11.14 SS G_CDS: -5.64 Total: 5.50 kcal Atomic # 6 Polarization: -5.93 SS G_CDS: -1.69 Total: -7.62 kcal Atomic # 7 Polarization: -54.86 SS G_CDS: -0.14 Total: -55.00 kcal Atomic # 8 Polarization: -11.54 SS G_CDS: 0.15 Total: -11.38 kcal Atomic # 14 Polarization: 25.74 SS G_CDS: -5.09 Total: 20.65 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -35.46 -7.41 -42.86 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690745304.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.017 kcal (2) G-P(sol) polarization free energy of solvation -35.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.863 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds