Wall clock time and date at job start Tue Mar 31 2020 00:18:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 120.00259 * 2 1 4 4 H 1.48501 * 109.47055 * 0.02562 * 3 2 1 5 5 H 1.48505 * 109.46653 * 119.99764 * 3 2 1 6 6 H 1.48495 * 109.47483 * 240.00126 * 3 2 1 7 7 C 1.38816 * 119.99569 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99460 * 180.02562 * 7 2 1 9 9 N 1.36935 * 120.00401 * 0.02562 * 7 2 1 10 10 C 1.46490 * 120.00121 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.47264 * 179.97438 * 10 9 7 12 12 H 1.09007 * 110.88434 * 51.11772 * 11 10 9 13 13 C 1.55155 * 111.00412 * 287.19518 * 11 10 9 14 14 C 1.54327 * 102.94065 * 206.41899 * 13 11 10 15 15 N 1.47025 * 107.27126 * 22.19595 * 14 13 11 16 16 C 1.34777 * 125.65018 * 181.09053 * 15 14 13 17 17 O 1.21273 * 120.00178 * 179.97438 * 16 15 14 18 18 C 1.50702 * 119.99376 * 359.95742 * 16 15 14 19 19 C 1.50703 * 109.46717 * 179.97438 * 18 16 15 20 20 C 1.34511 * 125.78823 * 89.71465 * 19 18 16 21 21 C 1.41383 * 106.84411 * 179.89038 * 20 19 18 22 22 C 1.34514 * 106.83773 * 0.37732 * 21 20 19 23 23 O 1.34300 * 108.41923 * 359.76630 * 22 21 20 24 24 C 1.47425 * 108.70149 * 1.05494 * 15 14 13 25 25 H 0.97001 * 119.99885 * 179.97438 * 1 2 3 26 26 H 0.97000 * 119.99302 * 359.97438 * 9 7 2 27 27 H 1.09003 * 109.47433 * 299.99456 * 10 9 7 28 28 H 1.08999 * 109.47686 * 59.99159 * 10 9 7 29 29 H 1.08996 * 110.71895 * 324.78612 * 13 11 10 30 30 H 1.09001 * 110.72006 * 88.05773 * 13 11 10 31 31 H 1.09000 * 109.88574 * 262.77402 * 14 13 11 32 32 H 1.09001 * 110.00464 * 141.68047 * 14 13 11 33 33 H 1.08991 * 109.47628 * 299.99386 * 18 16 15 34 34 H 1.09004 * 109.47361 * 60.00359 * 18 16 15 35 35 H 1.08001 * 126.58000 * 0.03051 * 20 19 18 36 36 H 1.07999 * 126.58285 * 180.12542 * 21 20 19 37 37 H 1.08001 * 125.78931 * 179.75169 * 22 21 20 38 38 H 1.09001 * 110.36548 * 217.02965 * 24 15 14 39 39 H 1.09001 * 110.46206 * 94.75830 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 1.2853 2.7465 0.0006 5 1 3.1040 1.6962 1.2126 6 1 3.1040 1.6964 -1.2124 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3256 -2.3881 -0.0016 10 6 2.0580 -3.6568 -0.0016 11 6 1.0637 -4.8197 -0.0022 12 1 0.3256 -4.6995 -0.7953 13 6 0.3763 -4.9645 1.3812 14 6 0.0006 -6.4606 1.4255 15 7 0.8814 -7.1602 0.4788 16 6 0.8550 -8.4806 0.2099 17 8 1.6319 -8.9516 -0.5934 18 6 -0.1399 -9.3717 0.9079 19 6 0.0373 -10.7910 0.4329 20 6 0.8543 -11.7079 0.9817 21 6 0.7049 -12.8939 0.2266 22 6 -0.1882 -12.6282 -0.7435 23 8 -0.5892 -11.3531 -0.6136 24 6 1.7979 -6.1779 -0.1284 25 1 -0.4850 -0.8401 -0.0004 26 1 0.3556 -2.3880 -0.0016 27 1 2.6853 -3.7142 -0.8912 28 1 2.6841 -3.7150 0.8887 29 1 1.0704 -4.7171 2.1844 30 1 -0.5161 -4.3409 1.4355 31 1 -1.0402 -6.5905 1.1288 32 1 0.1510 -6.8532 2.4312 33 1 0.0236 -9.3256 1.9845 34 1 -1.1515 -9.0361 0.6792 35 1 1.4989 -11.5661 1.8365 36 1 1.2135 -13.8318 0.3939 37 1 -0.5255 -13.3225 -1.4989 38 1 1.9720 -6.4192 -1.1770 39 1 2.7421 -6.1507 0.4156 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690745304.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:18:50 Heat of formation + Delta-G solvation = -30.530128 kcal Electronic energy + Delta-G solvation = -20851.345073 eV Core-core repulsion = 17566.976934 eV Total energy + Delta-G solvation = -3284.368138 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -43.50596 -41.16117 -38.96260 -36.75961 -34.32681 -33.99665 -33.05550 -31.65619 -30.29675 -28.34606 -26.56462 -24.68693 -24.01707 -22.70337 -21.76825 -21.44666 -20.32535 -19.37930 -18.38901 -18.28682 -17.60482 -16.90454 -16.49048 -16.42882 -15.82807 -15.57091 -15.29780 -15.05836 -14.92063 -14.26307 -14.00207 -13.83123 -13.75474 -13.60718 -13.55189 -13.08808 -12.77299 -12.73623 -12.58249 -12.22351 -11.90324 -11.86190 -11.70942 -11.28604 -11.13751 -10.92742 -10.84166 -9.76559 -9.41565 -9.11776 -8.40101 -5.34178 0.72062 1.47776 1.59600 1.62035 1.69158 1.85735 1.90838 2.19349 2.71188 3.28020 3.39804 3.56441 3.57191 3.72004 3.83714 4.09254 4.12496 4.14626 4.24660 4.31663 4.34865 4.40509 4.48332 4.55474 4.72833 4.77151 4.88952 4.92924 4.98669 5.00820 5.13966 5.16584 5.20784 5.31596 5.58228 5.60310 6.18490 6.40416 6.50682 6.99735 7.09240 7.99516 8.09925 9.12335 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.061473 B = 0.002662 C = 0.002631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 455.377221 B =10516.280761 C =10638.521770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.974 5.974 2 C -0.102 4.102 3 Si 1.127 2.873 4 H -0.292 1.292 5 H -0.276 1.276 6 H -0.280 1.280 7 C -0.337 4.337 8 H 0.064 0.936 9 N -0.753 5.753 10 C 0.170 3.830 11 C -0.099 4.099 12 H 0.075 0.925 13 C -0.118 4.118 14 C 0.101 3.899 15 N -0.615 5.615 16 C 0.524 3.476 17 O -0.585 6.585 18 C -0.048 4.048 19 C -0.020 4.020 20 C -0.210 4.210 21 C -0.228 4.228 22 C -0.044 4.044 23 O -0.195 6.195 24 C 0.120 3.880 25 H 0.246 0.754 26 H 0.363 0.637 27 H 0.014 0.986 28 H 0.027 0.973 29 H 0.077 0.923 30 H 0.082 0.918 31 H 0.093 0.907 32 H 0.103 0.897 33 H 0.158 0.842 34 H 0.134 0.866 35 H 0.158 0.842 36 H 0.169 0.831 37 H 0.235 0.765 38 H 0.062 0.938 39 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.324 -24.249 5.405 24.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.622 5.622 2 C -0.294 4.294 3 Si 0.952 3.048 4 H -0.218 1.218 5 H -0.202 1.202 6 H -0.206 1.206 7 C -0.468 4.468 8 H 0.083 0.917 9 N -0.398 5.398 10 C 0.043 3.957 11 C -0.119 4.119 12 H 0.093 0.907 13 C -0.156 4.156 14 C -0.020 4.020 15 N -0.348 5.348 16 C 0.314 3.686 17 O -0.465 6.465 18 C -0.087 4.087 19 C -0.070 4.070 20 C -0.229 4.229 21 C -0.247 4.247 22 C -0.111 4.111 23 O -0.092 6.092 24 C -0.004 4.004 25 H 0.056 0.944 26 H 0.196 0.804 27 H 0.032 0.968 28 H 0.045 0.955 29 H 0.095 0.905 30 H 0.100 0.900 31 H 0.111 0.889 32 H 0.122 0.878 33 H 0.176 0.824 34 H 0.152 0.848 35 H 0.176 0.824 36 H 0.186 0.814 37 H 0.251 0.749 38 H 0.081 0.919 39 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -2.023 -22.803 4.804 23.391 hybrid contribution 0.175 -1.624 -0.285 1.658 sum -1.848 -24.427 4.520 24.911 Atomic orbital electron populations 1.70996 1.07075 1.28000 1.56102 1.27190 0.97163 1.04574 1.00441 0.82633 0.73403 0.71654 0.77126 1.21805 1.20239 1.20642 1.20376 0.92369 0.87156 1.46928 0.91749 1.42475 1.04892 1.01697 1.90718 1.20578 0.93334 0.84004 0.97772 1.22366 0.97675 0.92736 0.99093 0.90696 1.22619 1.01505 0.95414 0.96084 1.22343 0.94662 0.91178 0.93847 1.48567 1.36703 1.06287 1.43276 1.20712 0.84688 0.81120 0.82033 1.90721 1.43802 1.74577 1.37364 1.20179 1.00700 0.84962 1.02826 1.21938 0.98841 0.96011 0.90192 1.21892 1.02607 0.93904 1.04487 1.22178 1.03268 1.00826 0.98457 1.24770 1.00169 0.83403 1.02764 1.83975 1.56638 1.25526 1.43040 1.22040 0.93206 0.86553 0.98588 0.94382 0.80432 0.96808 0.95475 0.90453 0.89983 0.88912 0.87848 0.82437 0.84826 0.82393 0.81378 0.74861 0.91913 0.90803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.11 13.70 21.65 0.30 -59.81 16 2 C -0.10 -5.90 5.50 84.86 0.47 -5.43 16 3 Si 1.13 51.50 29.92 68.60 2.05 53.56 16 4 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 5 H -0.28 -11.68 7.11 99.48 0.71 -10.97 16 6 H -0.28 -12.01 7.11 99.48 0.71 -11.30 16 7 C -0.34 -18.91 9.99 84.03 0.84 -18.07 16 8 H 0.06 3.55 7.83 -2.91 -0.02 3.52 16 9 N -0.75 -37.31 5.55 -343.47 -1.90 -39.22 16 10 C 0.17 6.64 5.71 86.38 0.49 7.13 16 11 C -0.10 -2.97 3.05 -9.40 -0.03 -3.00 16 12 H 0.07 2.40 8.14 -2.38 -0.02 2.38 16 13 C -0.12 -2.85 6.37 31.78 0.20 -2.64 16 14 C 0.10 1.71 6.49 86.73 0.56 2.27 16 15 N -0.61 -14.34 3.33 -811.78 -2.70 -17.04 16 16 C 0.52 13.29 7.84 87.66 0.69 13.98 16 17 O -0.58 -20.69 16.29 -3.01 -0.05 -20.74 16 18 C -0.05 -0.78 5.43 29.10 0.16 -0.63 16 19 C -0.02 -0.43 5.81 24.83 0.14 -0.29 16 20 C -0.21 -4.31 10.81 22.19 0.24 -4.07 16 21 C -0.23 -4.15 10.91 22.19 0.24 -3.91 16 22 C -0.04 -0.79 12.09 66.97 0.81 0.02 16 23 O -0.19 -4.60 10.65 -2.43 -0.03 -4.63 16 24 C 0.12 3.31 6.38 86.85 0.55 3.86 16 25 H 0.25 14.96 6.77 -92.71 -0.63 14.33 16 26 H 0.36 18.33 6.50 -92.71 -0.60 17.73 16 27 H 0.01 0.57 8.14 -2.39 -0.02 0.55 16 28 H 0.03 1.06 7.97 -2.39 -0.02 1.04 16 29 H 0.08 1.92 7.91 -2.39 -0.02 1.90 16 30 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 31 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 32 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 33 H 0.16 1.42 8.14 -2.39 -0.02 1.40 16 34 H 0.13 1.59 8.14 -2.38 -0.02 1.57 16 35 H 0.16 2.66 8.06 -2.91 -0.02 2.63 16 36 H 0.17 2.14 8.06 -2.91 -0.02 2.12 16 37 H 0.24 2.12 8.06 -2.91 -0.02 2.09 16 38 H 0.06 1.93 8.04 -2.39 -0.02 1.91 16 39 H 0.07 2.00 8.03 -2.39 -0.02 1.99 16 Total: -1.00 -77.92 331.34 3.62 -74.29 By element: Atomic # 1 Polarization: 23.77 SS G_CDS: 0.58 Total: 24.35 kcal Atomic # 6 Polarization: -16.14 SS G_CDS: 5.37 Total: -10.77 kcal Atomic # 7 Polarization: -111.76 SS G_CDS: -4.31 Total: -116.07 kcal Atomic # 8 Polarization: -25.29 SS G_CDS: -0.07 Total: -25.37 kcal Atomic # 14 Polarization: 51.50 SS G_CDS: 2.05 Total: 53.56 kcal Total: -77.92 3.62 -74.29 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690745304.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.763 kcal (2) G-P(sol) polarization free energy of solvation -77.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.293 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds