Wall clock time and date at job start Tue Mar 31 2020 00:19:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86805 * 119.99604 * 2 1 4 4 H 1.48501 * 109.47194 * 270.00285 * 3 2 1 5 5 H 1.48495 * 109.47106 * 30.00446 * 3 2 1 6 6 H 1.48500 * 109.46658 * 149.99966 * 3 2 1 7 7 C 1.38807 * 119.99993 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99748 * 179.97438 * 7 2 1 9 9 N 1.36939 * 120.00262 * 0.02562 * 7 2 1 10 10 C 1.46493 * 119.99815 * 179.97438 * 9 7 2 11 11 H 1.08996 * 112.85616 * 336.19302 * 10 9 7 12 12 C 1.53783 * 113.61341 * 107.50278 * 10 9 7 13 13 C 1.53781 * 87.08191 * 89.11304 * 12 10 9 14 14 H 1.09002 * 113.69315 * 270.87057 * 13 12 10 15 15 C 1.52999 * 113.61442 * 139.98313 * 13 12 10 16 16 N 1.46497 * 109.47703 * 87.50121 * 15 13 12 17 17 C 1.34772 * 120.00614 * 180.02562 * 16 15 13 18 18 O 1.21286 * 119.99670 * 359.97438 * 17 16 15 19 19 C 1.50701 * 120.00060 * 180.02562 * 17 16 15 20 20 C 1.50707 * 109.46801 * 179.97438 * 19 17 16 21 21 C 1.41379 * 126.57942 * 90.00061 * 20 19 17 22 22 C 1.34512 * 106.84086 * 179.97438 * 21 20 19 23 23 O 1.34304 * 108.41881 * 359.97438 * 22 21 20 24 24 C 1.34301 * 109.47829 * 0.02562 * 23 22 21 25 25 C 1.53781 * 87.08152 * 25.43260 * 13 12 10 26 26 H 0.97005 * 120.00227 * 359.97438 * 1 2 3 27 27 H 0.96995 * 119.99566 * 359.97438 * 9 7 2 28 28 H 1.09003 * 113.61471 * 334.56118 * 12 10 9 29 29 H 1.08999 * 113.61228 * 203.66139 * 12 10 9 30 30 H 1.08998 * 109.47082 * 327.50008 * 15 13 12 31 31 H 1.09003 * 109.47209 * 207.50607 * 15 13 12 32 32 H 0.97005 * 119.99911 * 359.97438 * 16 15 13 33 33 H 1.08995 * 109.47501 * 60.00246 * 19 17 16 34 34 H 1.08995 * 109.47228 * 299.99533 * 19 17 16 35 35 H 1.07997 * 126.58312 * 359.93859 * 21 20 19 36 36 H 1.07998 * 125.79383 * 179.97438 * 22 21 20 37 37 H 1.08004 * 125.78697 * 179.97438 * 24 23 22 38 38 H 1.09000 * 113.61563 * 89.11656 * 25 13 12 39 39 H 1.08999 * 113.61079 * 219.93190 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0466 -1.4001 5 1 1.4476 2.6526 0.7001 6 1 3.5477 1.4403 0.7001 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3881 -0.0016 10 6 2.0582 -3.6567 -0.0027 11 1 3.0657 -3.5634 -0.4081 12 6 1.9992 -4.4032 1.3404 13 6 0.7206 -5.0798 0.8187 14 1 -0.1910 -4.5260 1.0436 15 6 0.6198 -6.5626 1.1820 16 7 -0.0120 -6.7016 2.4964 17 6 -0.2058 -7.9261 3.0249 18 8 0.1425 -8.9131 2.4121 19 6 -0.8563 -8.0689 4.3768 20 6 -0.9554 -9.5296 4.7346 21 6 0.0089 -10.2938 5.4309 22 6 -0.4827 -11.5416 5.5335 23 8 -1.6871 -11.5733 4.9401 24 6 -1.9788 -10.3560 4.4536 25 6 1.2603 -4.8282 -0.5992 26 1 -0.4851 0.8401 0.0004 27 1 0.3557 -2.3880 -0.0016 28 1 1.8295 -3.7497 2.1962 29 1 2.8281 -5.0946 1.4924 30 1 1.6185 -6.9982 1.2110 31 1 0.0194 -7.0800 0.4337 32 1 -0.2903 -5.9121 2.9867 33 1 -1.8552 -7.6339 4.3472 34 1 -0.2564 -7.5511 5.1252 35 1 0.9584 -9.9432 5.8076 36 1 0.0079 -12.3764 6.0118 37 1 -2.8820 -10.0864 3.9262 38 1 1.8871 -5.6357 -0.9775 39 1 0.4936 -4.5192 -1.3097 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691778977.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:19:15 Heat of formation + Delta-G solvation = 4.864861 kcal Electronic energy + Delta-G solvation = -20458.217550 eV Core-core repulsion = 17175.384254 eV Total energy + Delta-G solvation = -3282.833296 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.71200 -39.72777 -38.48551 -34.68771 -34.11023 -33.20950 -30.78006 -30.12268 -28.51790 -26.63874 -25.07127 -23.71604 -21.88280 -21.77304 -21.14999 -20.12317 -18.43230 -17.74023 -17.33552 -16.95301 -15.94859 -15.89116 -15.56739 -14.94180 -14.80942 -14.28291 -14.09252 -13.67234 -13.44491 -12.99592 -12.94724 -12.90738 -12.61236 -12.27984 -11.93852 -11.73264 -11.37847 -11.05766 -10.86901 -10.50123 -10.22014 -10.17648 -9.96870 -9.71653 -9.68603 -9.44856 -8.98298 -8.90153 -8.69879 -7.02779 -5.83463 -3.12517 1.60743 2.36366 2.64814 2.97135 3.35581 3.40048 3.45450 3.46878 4.53208 4.53489 4.58623 4.77789 4.89238 5.04475 5.10568 5.18899 5.23711 5.27882 5.43010 5.50413 5.61733 5.69975 5.80990 5.85961 5.95194 5.97276 6.09780 6.19927 6.29718 6.35552 6.43677 6.58113 6.72419 6.88705 6.93059 7.02269 7.53699 7.66554 8.24817 8.35832 9.46501 10.04010 10.38225 11.38988 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.041699 B = 0.002552 C = 0.002504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 671.323068 B =10970.587892 C =11180.879440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.013 4.013 3 Si 0.909 3.091 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.242 4.242 8 H 0.072 0.928 9 N -0.706 5.706 10 C 0.167 3.833 11 H 0.062 0.938 12 C -0.168 4.168 13 C -0.119 4.119 14 H 0.093 0.907 15 C 0.131 3.869 16 N -0.726 5.726 17 C 0.509 3.491 18 O -0.539 6.539 19 C -0.073 4.073 20 C -0.162 4.162 21 C -0.199 4.199 22 C -0.046 4.046 23 O -0.178 6.178 24 C -0.028 4.028 25 C -0.148 4.148 26 H 0.256 0.744 27 H 0.385 0.615 28 H 0.066 0.934 29 H 0.067 0.933 30 H 0.064 0.936 31 H 0.062 0.938 32 H 0.402 0.598 33 H 0.102 0.898 34 H 0.103 0.897 35 H 0.146 0.854 36 H 0.201 0.799 37 H 0.200 0.800 38 H 0.076 0.924 39 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.682 -19.132 10.424 21.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.209 4.209 3 Si 0.740 3.260 4 H -0.216 1.216 5 H -0.218 1.218 6 H -0.207 1.207 7 C -0.373 4.373 8 H 0.090 0.910 9 N -0.344 5.344 10 C 0.055 3.945 11 H 0.080 0.920 12 C -0.209 4.209 13 C -0.138 4.138 14 H 0.111 0.889 15 C 0.008 3.992 16 N -0.378 5.378 17 C 0.295 3.705 18 O -0.416 6.416 19 C -0.113 4.113 20 C -0.163 4.163 21 C -0.218 4.218 22 C -0.113 4.113 23 O -0.074 6.074 24 C -0.096 4.096 25 C -0.188 4.188 26 H 0.066 0.934 27 H 0.219 0.781 28 H 0.085 0.915 29 H 0.086 0.914 30 H 0.083 0.917 31 H 0.080 0.920 32 H 0.237 0.763 33 H 0.120 0.880 34 H 0.121 0.879 35 H 0.164 0.836 36 H 0.217 0.783 37 H 0.217 0.783 38 H 0.095 0.905 39 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -2.488 -19.912 9.933 22.390 hybrid contribution 0.150 1.500 0.293 1.535 sum -2.338 -18.412 10.225 21.190 Atomic orbital electron populations 1.69662 1.05140 1.25800 1.57508 1.24766 0.95549 0.97804 1.02789 0.86166 0.78658 0.83655 0.77571 1.21646 1.21751 1.20702 1.19293 0.91129 0.83972 1.42925 0.90991 1.42167 1.05677 0.99439 1.87152 1.21055 0.95100 0.85586 0.92768 0.91980 1.23884 0.95682 0.99608 1.01737 1.22710 0.99540 0.92976 0.98594 0.88890 1.21458 0.97544 0.96911 0.83270 1.46093 1.62417 1.08106 1.21149 1.20576 0.79167 0.83213 0.87534 1.90708 1.50748 1.37670 1.62426 1.20013 1.02898 0.93123 0.95237 1.19807 0.95864 0.96138 1.04538 1.21678 1.01340 0.93879 1.04888 1.23942 0.85548 0.99575 1.02266 1.84053 1.33361 1.32552 1.57388 1.23786 1.01438 0.81894 1.02488 1.23447 1.00502 0.99694 0.95157 0.93432 0.78120 0.91509 0.91441 0.91720 0.91964 0.76340 0.88019 0.87878 0.83638 0.78253 0.78344 0.90497 0.91341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.56 13.06 55.49 0.72 -26.84 16 2 C -0.01 -0.37 5.50 -17.43 -0.10 -0.46 16 3 Si 0.91 21.98 29.55 -169.99 -5.02 16.96 16 4 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 5 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 6 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 7 C -0.24 -6.58 9.97 -15.06 -0.15 -6.73 16 8 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 9 N -0.71 -17.16 5.31 -52.64 -0.28 -17.43 16 10 C 0.17 3.22 4.56 -67.12 -0.31 2.91 16 11 H 0.06 1.21 8.10 -51.93 -0.42 0.79 16 12 C -0.17 -2.74 7.43 -25.92 -0.19 -2.93 16 13 C -0.12 -1.75 3.63 -89.81 -0.33 -2.07 16 14 H 0.09 1.45 8.14 -51.93 -0.42 1.02 16 15 C 0.13 1.75 5.51 -4.04 -0.02 1.72 16 16 N -0.73 -8.49 5.56 -60.30 -0.33 -8.82 16 17 C 0.51 6.41 7.82 -10.99 -0.09 6.33 16 18 O -0.54 -9.05 16.03 5.55 0.09 -8.97 16 19 C -0.07 -0.66 6.22 -29.03 -0.18 -0.84 16 20 C -0.16 -1.72 4.66 -104.74 -0.49 -2.21 16 21 C -0.20 -2.02 10.87 -39.70 -0.43 -2.45 16 22 C -0.05 -0.42 12.09 29.42 0.36 -0.06 16 23 O -0.18 -1.89 10.65 5.71 0.06 -1.83 16 24 C -0.03 -0.28 12.01 29.42 0.35 0.07 16 25 C -0.15 -2.35 7.39 -25.92 -0.19 -2.54 16 26 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 27 H 0.38 9.87 7.90 -40.82 -0.32 9.55 16 28 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 29 H 0.07 1.00 7.90 -51.93 -0.41 0.59 16 30 H 0.06 0.91 7.84 -51.93 -0.41 0.50 16 31 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.40 3.91 8.47 -40.82 -0.35 3.57 16 33 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.15 1.27 8.06 -52.49 -0.42 0.85 16 36 H 0.20 1.05 8.06 -52.49 -0.42 0.62 16 37 H 0.20 1.40 8.06 -52.48 -0.42 0.98 16 38 H 0.08 1.07 8.10 -51.93 -0.42 0.65 16 39 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 LS Contribution 336.61 15.07 5.07 5.07 Total: -1.00 -33.40 336.61 -7.13 -40.53 By element: Atomic # 1 Polarization: 16.29 SS G_CDS: -5.68 Total: 10.61 kcal Atomic # 6 Polarization: -7.52 SS G_CDS: -1.76 Total: -9.28 kcal Atomic # 7 Polarization: -53.21 SS G_CDS: 0.11 Total: -53.10 kcal Atomic # 8 Polarization: -10.95 SS G_CDS: 0.15 Total: -10.80 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -33.40 -7.13 -40.53 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691778977.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.396 kcal (2) G-P(sol) polarization free energy of solvation -33.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.531 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds