Wall clock time and date at job start Tue Mar 31 2020 00:19:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86805 * 119.99604 * 2 1 4 4 H 1.48501 * 109.47194 * 270.00285 * 3 2 1 5 5 H 1.48495 * 109.47106 * 30.00446 * 3 2 1 6 6 H 1.48500 * 109.46658 * 149.99966 * 3 2 1 7 7 C 1.38807 * 119.99993 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99748 * 179.97438 * 7 2 1 9 9 N 1.36939 * 120.00262 * 0.02562 * 7 2 1 10 10 C 1.46493 * 119.99815 * 179.97438 * 9 7 2 11 11 H 1.08996 * 112.85616 * 336.19302 * 10 9 7 12 12 C 1.53783 * 113.61341 * 107.50278 * 10 9 7 13 13 C 1.53781 * 87.08191 * 89.11304 * 12 10 9 14 14 H 1.09002 * 113.69315 * 270.87057 * 13 12 10 15 15 C 1.52999 * 113.61442 * 139.98313 * 13 12 10 16 16 N 1.46497 * 109.47703 * 87.50121 * 15 13 12 17 17 C 1.34772 * 120.00614 * 180.02562 * 16 15 13 18 18 O 1.21286 * 119.99670 * 359.97438 * 17 16 15 19 19 C 1.50701 * 120.00060 * 180.02562 * 17 16 15 20 20 C 1.50707 * 109.46801 * 179.97438 * 19 17 16 21 21 C 1.41379 * 126.57942 * 90.00061 * 20 19 17 22 22 C 1.34512 * 106.84086 * 179.97438 * 21 20 19 23 23 O 1.34304 * 108.41881 * 359.97438 * 22 21 20 24 24 C 1.34301 * 109.47829 * 0.02562 * 23 22 21 25 25 C 1.53781 * 87.08152 * 25.43260 * 13 12 10 26 26 H 0.97005 * 120.00227 * 359.97438 * 1 2 3 27 27 H 0.96995 * 119.99566 * 359.97438 * 9 7 2 28 28 H 1.09003 * 113.61471 * 334.56118 * 12 10 9 29 29 H 1.08999 * 113.61228 * 203.66139 * 12 10 9 30 30 H 1.08998 * 109.47082 * 327.50008 * 15 13 12 31 31 H 1.09003 * 109.47209 * 207.50607 * 15 13 12 32 32 H 0.97005 * 119.99911 * 359.97438 * 16 15 13 33 33 H 1.08995 * 109.47501 * 60.00246 * 19 17 16 34 34 H 1.08995 * 109.47228 * 299.99533 * 19 17 16 35 35 H 1.07997 * 126.58312 * 359.93859 * 21 20 19 36 36 H 1.07998 * 125.79383 * 179.97438 * 22 21 20 37 37 H 1.08004 * 125.78697 * 179.97438 * 24 23 22 38 38 H 1.09000 * 113.61563 * 89.11656 * 25 13 12 39 39 H 1.08999 * 113.61079 * 219.93190 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0466 -1.4001 5 1 1.4476 2.6526 0.7001 6 1 3.5477 1.4403 0.7001 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3881 -0.0016 10 6 2.0582 -3.6567 -0.0027 11 1 3.0657 -3.5634 -0.4081 12 6 1.9992 -4.4032 1.3404 13 6 0.7206 -5.0798 0.8187 14 1 -0.1910 -4.5260 1.0436 15 6 0.6198 -6.5626 1.1820 16 7 -0.0120 -6.7016 2.4964 17 6 -0.2058 -7.9261 3.0249 18 8 0.1425 -8.9131 2.4121 19 6 -0.8563 -8.0689 4.3768 20 6 -0.9554 -9.5296 4.7346 21 6 0.0089 -10.2938 5.4309 22 6 -0.4827 -11.5416 5.5335 23 8 -1.6871 -11.5733 4.9401 24 6 -1.9788 -10.3560 4.4536 25 6 1.2603 -4.8282 -0.5992 26 1 -0.4851 0.8401 0.0004 27 1 0.3557 -2.3880 -0.0016 28 1 1.8295 -3.7497 2.1962 29 1 2.8281 -5.0946 1.4924 30 1 1.6185 -6.9982 1.2110 31 1 0.0194 -7.0800 0.4337 32 1 -0.2903 -5.9121 2.9867 33 1 -1.8552 -7.6339 4.3472 34 1 -0.2564 -7.5511 5.1252 35 1 0.9584 -9.9432 5.8076 36 1 0.0079 -12.3764 6.0118 37 1 -2.8820 -10.0864 3.9262 38 1 1.8871 -5.6357 -0.9775 39 1 0.4936 -4.5192 -1.3097 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691778977.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:19:13 Heat of formation + Delta-G solvation = -17.917650 kcal Electronic energy + Delta-G solvation = -20459.205474 eV Core-core repulsion = 17175.384254 eV Total energy + Delta-G solvation = -3283.821220 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -43.42245 -40.82284 -39.80911 -36.00072 -34.91935 -34.90325 -32.15205 -31.33224 -29.50624 -27.76217 -26.43052 -25.62459 -23.20329 -22.48048 -22.06795 -20.98418 -19.81508 -19.33175 -18.44807 -17.94556 -17.00474 -16.73285 -16.62563 -16.53308 -15.82122 -15.61095 -15.47535 -14.92282 -14.67989 -14.54880 -13.99212 -13.68671 -13.62850 -13.36092 -13.25597 -12.93614 -12.90361 -12.64969 -12.39543 -12.15160 -12.05428 -11.54468 -11.47481 -11.09895 -10.92341 -10.81063 -10.47686 -10.02224 -9.40838 -8.99573 -7.95236 -5.23386 0.89918 1.48619 1.49626 1.58050 1.61416 1.69186 2.31725 2.44951 2.56074 3.37504 3.71950 3.79799 3.80458 3.85361 3.97047 4.10244 4.16606 4.22322 4.33653 4.42128 4.57031 4.65421 4.73773 4.78078 4.83369 4.93206 5.00071 5.12362 5.12736 5.30413 5.32489 5.36738 5.50654 5.57450 5.60752 5.67115 6.22043 6.28662 6.61437 7.30368 7.33737 8.10825 8.33272 9.28022 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.041699 B = 0.002552 C = 0.002504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 671.323068 B =10970.587892 C =11180.879440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.969 5.969 2 C -0.075 4.075 3 Si 0.972 3.028 4 H -0.288 1.288 5 H -0.296 1.296 6 H -0.270 1.270 7 C -0.242 4.242 8 H 0.076 0.924 9 N -0.719 5.719 10 C 0.143 3.857 11 H 0.058 0.942 12 C -0.152 4.152 13 C -0.101 4.101 14 H 0.084 0.916 15 C 0.141 3.859 16 N -0.719 5.719 17 C 0.510 3.490 18 O -0.584 6.584 19 C -0.065 4.065 20 C -0.183 4.183 21 C -0.223 4.223 22 C -0.047 4.047 23 O -0.192 6.192 24 C -0.041 4.041 25 C -0.136 4.136 26 H 0.251 0.749 27 H 0.375 0.625 28 H 0.050 0.950 29 H 0.089 0.911 30 H 0.063 0.937 31 H 0.059 0.941 32 H 0.413 0.587 33 H 0.129 0.871 34 H 0.122 0.878 35 H 0.154 0.846 36 H 0.233 0.767 37 H 0.221 0.779 38 H 0.103 0.897 39 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.123 -19.921 11.247 22.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.619 5.619 2 C -0.267 4.267 3 Si 0.801 3.199 4 H -0.216 1.216 5 H -0.222 1.222 6 H -0.195 1.195 7 C -0.374 4.374 8 H 0.094 0.906 9 N -0.358 5.358 10 C 0.033 3.967 11 H 0.077 0.923 12 C -0.193 4.193 13 C -0.120 4.120 14 H 0.102 0.898 15 C 0.017 3.983 16 N -0.371 5.371 17 C 0.297 3.703 18 O -0.464 6.464 19 C -0.105 4.105 20 C -0.184 4.184 21 C -0.243 4.243 22 C -0.113 4.113 23 O -0.088 6.088 24 C -0.108 4.108 25 C -0.176 4.176 26 H 0.060 0.940 27 H 0.207 0.793 28 H 0.069 0.931 29 H 0.108 0.892 30 H 0.081 0.919 31 H 0.078 0.922 32 H 0.250 0.750 33 H 0.147 0.853 34 H 0.141 0.859 35 H 0.172 0.828 36 H 0.249 0.751 37 H 0.238 0.762 38 H 0.121 0.879 39 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -1.898 -20.719 10.774 23.430 hybrid contribution 0.035 1.656 0.027 1.656 sum -1.863 -19.063 10.801 21.989 Atomic orbital electron populations 1.69807 1.06528 1.26075 1.59531 1.25540 0.96390 1.01014 1.03783 0.85159 0.77741 0.79612 0.77367 1.21554 1.22230 1.19463 1.19665 0.91511 0.85200 1.41009 0.90620 1.42292 1.05333 1.00517 1.87626 1.21383 0.95007 0.84924 0.95349 0.92347 1.23699 0.97290 0.99167 0.99131 1.22488 0.98368 0.93715 0.97396 0.89798 1.21239 0.97592 0.95355 0.84114 1.46030 1.61889 1.08603 1.20605 1.21157 0.78304 0.82468 0.88337 1.90689 1.52782 1.39072 1.63881 1.20058 1.04338 0.92813 0.93282 1.20138 0.96262 0.97068 1.04977 1.21990 1.01992 0.94583 1.05684 1.24625 0.84952 1.00394 1.01374 1.84053 1.34072 1.32982 1.57679 1.24304 1.02320 0.81698 1.02503 1.23354 0.99987 0.98636 0.95581 0.94004 0.79309 0.93140 0.89229 0.91915 0.92241 0.75031 0.85340 0.85946 0.82783 0.75085 0.76246 0.87882 0.92398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.07 13.06 21.65 0.28 -57.79 16 2 C -0.08 -4.23 5.50 84.86 0.47 -3.76 16 3 Si 0.97 45.34 29.55 68.60 2.03 47.36 16 4 H -0.29 -13.29 7.11 99.48 0.71 -12.58 16 5 H -0.30 -13.89 7.11 99.48 0.71 -13.18 16 6 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 7 C -0.24 -13.16 9.97 84.03 0.84 -12.32 16 8 H 0.08 3.96 7.83 -2.91 -0.02 3.94 16 9 N -0.72 -35.09 5.31 -320.46 -1.70 -36.79 16 10 C 0.14 5.39 4.56 45.52 0.21 5.60 16 11 H 0.06 2.22 8.10 -2.39 -0.02 2.20 16 12 C -0.15 -4.72 7.43 31.12 0.23 -4.49 16 13 C -0.10 -2.79 3.63 -10.27 -0.04 -2.83 16 14 H 0.08 2.53 8.14 -2.39 -0.02 2.51 16 15 C 0.14 3.47 5.51 86.38 0.48 3.95 16 16 N -0.72 -15.40 5.56 -463.07 -2.57 -17.98 16 17 C 0.51 11.98 7.82 87.66 0.69 12.66 16 18 O -0.58 -19.10 16.03 -3.05 -0.05 -19.15 16 19 C -0.07 -1.04 6.22 29.10 0.18 -0.86 16 20 C -0.18 -3.64 4.66 -19.94 -0.09 -3.73 16 21 C -0.22 -4.29 10.87 22.19 0.24 -4.05 16 22 C -0.05 -0.79 12.09 66.97 0.81 0.02 16 23 O -0.19 -3.89 10.65 -2.47 -0.03 -3.91 16 24 C -0.04 -0.77 12.01 66.97 0.80 0.03 16 25 C -0.14 -4.11 7.39 31.12 0.23 -3.88 16 26 H 0.25 14.62 8.31 -92.70 -0.77 13.85 16 27 H 0.37 19.52 7.90 -92.71 -0.73 18.79 16 28 H 0.05 1.74 8.14 -2.39 -0.02 1.73 16 29 H 0.09 2.41 7.90 -2.39 -0.02 2.39 16 30 H 0.06 1.61 7.84 -2.39 -0.02 1.60 16 31 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 32 H 0.41 7.12 8.47 -92.70 -0.79 6.33 16 33 H 0.13 1.34 8.14 -2.39 -0.02 1.32 16 34 H 0.12 1.48 8.14 -2.39 -0.02 1.46 16 35 H 0.15 2.51 8.06 -2.91 -0.02 2.49 16 36 H 0.23 1.95 8.06 -2.91 -0.02 1.93 16 37 H 0.22 2.79 8.06 -2.91 -0.02 2.76 16 38 H 0.10 2.60 8.10 -2.39 -0.02 2.58 16 39 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 Total: -1.00 -72.16 336.61 2.55 -69.61 By element: Atomic # 1 Polarization: 32.77 SS G_CDS: -0.45 Total: 32.31 kcal Atomic # 6 Polarization: -18.72 SS G_CDS: 5.04 Total: -13.67 kcal Atomic # 7 Polarization: -108.56 SS G_CDS: -3.99 Total: -112.55 kcal Atomic # 8 Polarization: -22.98 SS G_CDS: -0.08 Total: -23.06 kcal Atomic # 14 Polarization: 45.34 SS G_CDS: 2.03 Total: 47.36 kcal Total: -72.16 2.55 -69.61 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691778977.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.692 kcal (2) G-P(sol) polarization free energy of solvation -72.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.610 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds