Wall clock time and date at job start Tue Mar 31 2020 00:22:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86797 * 120.00215 * 2 1 4 4 H 1.48497 * 109.47318 * 274.14448 * 3 2 1 5 5 H 1.48505 * 109.47090 * 34.14448 * 3 2 1 6 6 H 1.48503 * 109.47118 * 154.13704 * 3 2 1 7 7 C 1.38822 * 119.99839 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99475 * 170.41866 * 7 2 1 9 9 N 1.36930 * 120.00100 * 350.42268 * 7 2 1 10 10 C 1.47432 * 125.64720 * 349.98021 * 9 7 2 11 11 C 1.54912 * 104.83072 * 204.09553 * 10 9 7 12 12 C 1.55155 * 101.58289 * 322.99089 * 11 10 9 13 13 H 1.09000 * 110.87277 * 277.06691 * 12 11 10 14 14 C 1.52996 * 110.71940 * 153.86422 * 12 11 10 15 15 C 1.52996 * 109.47400 * 180.02562 * 14 12 11 16 16 N 1.46497 * 109.47394 * 179.97438 * 15 14 12 17 17 C 1.34781 * 120.00264 * 180.02562 * 16 15 14 18 18 O 1.21696 * 119.99699 * 0.02562 * 17 16 15 19 19 C 1.46653 * 120.00204 * 180.02562 * 17 16 15 20 20 C 1.36549 * 125.98695 * 180.02562 * 19 17 16 21 21 C 1.40361 * 106.70364 * 179.97438 * 20 19 17 22 22 C 1.35126 * 107.12281 * 0.02562 * 21 20 19 23 23 O 1.33937 * 108.76622 * 0.25804 * 22 21 20 24 24 C 1.47019 * 125.64954 * 169.94379 * 9 7 2 25 25 H 0.96998 * 119.99581 * 359.97438 * 1 2 3 26 26 H 1.08993 * 110.36807 * 322.93889 * 10 9 7 27 27 H 1.09007 * 110.36402 * 85.14966 * 10 9 7 28 28 H 1.09001 * 111.00039 * 204.91644 * 11 10 9 29 29 H 1.08995 * 111.00114 * 81.07026 * 11 10 9 30 30 H 1.09006 * 109.47007 * 60.02326 * 14 12 11 31 31 H 1.08997 * 109.47273 * 300.02613 * 14 12 11 32 32 H 1.09006 * 109.47080 * 59.99997 * 15 14 12 33 33 H 1.08997 * 109.47103 * 300.00344 * 15 14 12 34 34 H 0.97004 * 120.00319 * 0.02562 * 16 15 14 35 35 H 1.07996 * 126.64377 * 0.02562 * 20 19 17 36 36 H 1.08010 * 126.44007 * 179.97438 * 21 20 19 37 37 H 1.07994 * 125.62275 * 180.02562 * 22 21 20 38 38 H 1.09001 * 109.88293 * 59.55641 * 24 9 7 39 39 H 1.08992 * 110.01143 * 298.46174 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4102 2.0970 -1.3964 5 1 1.4943 2.6258 0.7859 6 1 3.5888 1.4164 0.6108 7 6 2.0103 -1.2023 -0.0005 8 1 3.0790 -1.2086 -0.1562 9 7 1.3399 -2.3799 0.1962 10 6 -0.0653 -2.5077 0.6237 11 6 -0.1541 -3.9076 1.2809 12 6 0.7932 -4.7378 0.3749 13 1 0.2746 -5.0765 -0.5220 14 6 1.3733 -5.9265 1.1438 15 6 2.3019 -6.7237 0.2256 16 7 2.8579 -7.8616 0.9619 17 6 3.7088 -8.7093 0.3504 18 8 4.0155 -8.5291 -0.8134 19 6 4.2649 -9.8487 1.0874 20 6 5.1331 -10.7785 0.5912 21 6 5.3994 -11.6790 1.6345 22 6 4.6907 -11.2650 2.7080 23 8 4.0037 -10.1652 2.3726 24 6 1.9020 -3.7264 0.0155 25 1 -0.4849 0.8401 0.0004 26 1 -0.3135 -1.7320 1.3480 27 1 -0.7307 -2.4482 -0.2377 28 1 -1.1723 -4.2945 1.2400 29 1 0.2111 -3.8811 2.3076 30 1 0.5618 -6.5688 1.4862 31 1 1.9366 -5.5633 2.0034 32 1 3.1134 -6.0815 -0.1168 33 1 1.7386 -7.0869 -0.6340 34 1 2.6136 -8.0050 1.8897 35 1 5.5372 -10.8137 -0.4096 36 1 6.0482 -12.5413 1.5878 37 1 4.6772 -11.7442 3.6757 38 1 2.7571 -3.8630 0.6775 39 1 2.2095 -3.8662 -1.0207 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691870251.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:22:58 Heat of formation + Delta-G solvation = -3.994095 kcal Electronic energy + Delta-G solvation = -20763.610767 eV Core-core repulsion = 17480.393318 eV Total energy + Delta-G solvation = -3283.217450 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.97510 -39.60223 -37.82073 -35.35776 -33.44841 -32.99834 -31.16138 -30.05504 -28.90332 -26.66907 -24.87894 -23.42968 -22.23245 -21.92517 -20.62114 -20.12052 -19.46301 -18.59217 -16.84178 -16.66474 -16.55985 -15.91389 -15.63000 -14.80645 -14.61763 -14.34994 -13.73910 -13.57203 -13.35626 -13.32468 -12.99995 -12.52403 -12.28935 -11.98155 -11.66471 -11.60329 -11.16626 -10.79437 -10.74289 -10.54308 -10.39931 -10.13191 -10.00016 -9.88293 -9.75666 -9.59980 -9.31493 -8.94677 -8.54148 -6.74923 -5.71062 -3.02892 0.78152 2.03465 2.38602 2.99151 3.05017 3.42060 3.47594 3.49878 4.38108 4.53295 4.56869 4.70261 4.91971 5.09146 5.28102 5.30324 5.43403 5.49547 5.55108 5.60787 5.62362 5.76018 5.87166 5.97857 6.00831 6.12516 6.21289 6.29563 6.38570 6.50913 6.60231 6.64449 6.78970 7.00316 7.29026 7.54870 7.63010 7.82229 7.90977 8.30945 9.24021 9.86172 10.54390 11.42293 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.034583 B = 0.002838 C = 0.002745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 809.461691 B = 9863.703556 C =10196.528095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.009 4.009 3 Si 0.910 3.090 4 H -0.289 1.289 5 H -0.290 1.290 6 H -0.281 1.281 7 C -0.227 4.227 8 H 0.075 0.925 9 N -0.604 5.604 10 C 0.172 3.828 11 C -0.140 4.140 12 C -0.097 4.097 13 H 0.074 0.926 14 C -0.117 4.117 15 C 0.115 3.885 16 N -0.716 5.716 17 C 0.599 3.401 18 O -0.519 6.519 19 C -0.076 4.076 20 C -0.123 4.123 21 C -0.226 4.226 22 C -0.009 4.009 23 O -0.164 6.164 24 C 0.139 3.861 25 H 0.252 0.748 26 H 0.067 0.933 27 H 0.026 0.974 28 H 0.058 0.942 29 H 0.059 0.941 30 H 0.066 0.934 31 H 0.071 0.929 32 H 0.077 0.923 33 H 0.072 0.928 34 H 0.405 0.595 35 H 0.161 0.839 36 H 0.156 0.844 37 H 0.210 0.790 38 H 0.022 0.978 39 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.551 -23.119 6.950 24.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.205 4.205 3 Si 0.740 3.260 4 H -0.216 1.216 5 H -0.216 1.216 6 H -0.206 1.206 7 C -0.356 4.356 8 H 0.093 0.907 9 N -0.330 5.330 10 C 0.047 3.953 11 C -0.178 4.178 12 C -0.116 4.116 13 H 0.092 0.908 14 C -0.155 4.155 15 C -0.007 4.007 16 N -0.367 5.367 17 C 0.384 3.616 18 O -0.397 6.397 19 C -0.128 4.128 20 C -0.144 4.144 21 C -0.245 4.245 22 C -0.079 4.079 23 O -0.060 6.060 24 C 0.013 3.987 25 H 0.062 0.938 26 H 0.085 0.915 27 H 0.044 0.956 28 H 0.077 0.923 29 H 0.078 0.922 30 H 0.085 0.915 31 H 0.089 0.911 32 H 0.096 0.904 33 H 0.090 0.910 34 H 0.239 0.761 35 H 0.178 0.822 36 H 0.174 0.826 37 H 0.227 0.773 38 H 0.040 0.960 39 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges 5.504 -22.539 6.265 24.033 hybrid contribution 0.503 0.571 0.356 0.840 sum 6.007 -21.969 6.621 23.718 Atomic orbital electron populations 1.69965 1.04970 1.25088 1.56653 1.24822 0.95627 0.97804 1.02286 0.86136 0.78744 0.83569 0.77521 1.21627 1.21644 1.20621 1.19036 0.91158 0.82889 1.42516 0.90696 1.44499 1.09526 0.99867 1.79156 1.21392 0.85816 0.91271 0.96800 1.23031 0.97493 0.98790 0.98526 1.22081 0.97531 0.93656 0.98362 0.90757 1.21793 0.98306 0.96847 0.98525 1.21619 0.97717 0.86245 0.95136 1.45998 1.46369 1.28112 1.16204 1.16564 0.79072 0.80337 0.85618 1.90908 1.60419 1.73096 1.15256 1.22202 1.05926 1.01281 0.83373 1.22007 0.97636 0.93564 1.01185 1.21880 1.05792 1.03511 0.93280 1.24420 0.95046 0.87580 1.00855 1.84071 1.56009 1.38895 1.26987 1.21371 0.94062 0.85915 0.97367 0.93774 0.91466 0.95640 0.92305 0.92201 0.91513 0.91077 0.90435 0.90997 0.76083 0.82181 0.82588 0.77330 0.95985 0.96144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.44 10.68 55.49 0.59 -26.84 16 2 C -0.01 -0.26 5.40 -17.43 -0.09 -0.35 16 3 Si 0.91 22.42 29.56 -169.99 -5.03 17.40 16 4 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 5 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 6 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 7 C -0.23 -6.50 10.24 -15.06 -0.15 -6.66 16 8 H 0.08 2.08 7.85 -52.49 -0.41 1.67 16 9 N -0.60 -15.78 3.39 -170.07 -0.58 -16.36 16 10 C 0.17 4.19 5.42 -2.52 -0.01 4.18 16 11 C -0.14 -2.54 6.53 -24.58 -0.16 -2.70 16 12 C -0.10 -1.61 2.98 -88.79 -0.26 -1.88 16 13 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 14 C -0.12 -1.48 4.71 -26.74 -0.13 -1.60 16 15 C 0.12 1.49 5.52 -4.05 -0.02 1.46 16 16 N -0.72 -8.27 5.55 -61.63 -0.34 -8.61 16 17 C 0.60 7.97 7.79 -12.86 -0.10 7.87 16 18 O -0.52 -8.66 16.86 5.19 0.09 -8.58 16 19 C -0.08 -0.85 7.13 -36.80 -0.26 -1.11 16 20 C -0.12 -1.23 10.62 -39.39 -0.42 -1.65 16 21 C -0.23 -1.64 10.87 -39.89 -0.43 -2.07 16 22 C -0.01 -0.06 12.08 29.63 0.36 0.30 16 23 O -0.16 -1.53 10.40 4.96 0.05 -1.48 16 24 C 0.14 2.91 5.99 -3.06 -0.02 2.90 16 25 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 26 H 0.07 1.82 6.93 -51.93 -0.36 1.46 16 27 H 0.03 0.67 8.07 -51.93 -0.42 0.26 16 28 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 29 H 0.06 1.05 8.05 -51.93 -0.42 0.63 16 30 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.07 0.91 8.06 -51.93 -0.42 0.49 16 32 H 0.08 1.13 7.49 -51.93 -0.39 0.75 16 33 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 34 H 0.40 3.72 8.23 -40.82 -0.34 3.38 16 35 H 0.16 1.50 8.06 -52.49 -0.42 1.08 16 36 H 0.16 0.73 8.06 -52.48 -0.42 0.30 16 37 H 0.21 0.46 8.06 -52.49 -0.42 0.04 16 38 H 0.02 0.46 7.76 -51.93 -0.40 0.05 16 39 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 LS Contribution 328.69 15.07 4.95 4.95 Total: -1.00 -33.82 328.69 -7.64 -41.47 By element: Atomic # 1 Polarization: 5.04 SS G_CDS: -5.67 Total: -0.63 kcal Atomic # 6 Polarization: 0.40 SS G_CDS: -1.71 Total: -1.31 kcal Atomic # 7 Polarization: -51.49 SS G_CDS: -0.33 Total: -51.81 kcal Atomic # 8 Polarization: -10.19 SS G_CDS: 0.14 Total: -10.05 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -5.03 Total: 17.40 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -33.82 -7.64 -41.47 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691870251.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.474 kcal (2) G-P(sol) polarization free energy of solvation -33.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.468 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds