Wall clock time and date at job start Tue Mar 31 2020 00:22:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86797 * 120.00215 * 2 1 4 4 H 1.48497 * 109.47318 * 274.14448 * 3 2 1 5 5 H 1.48505 * 109.47090 * 34.14448 * 3 2 1 6 6 H 1.48503 * 109.47118 * 154.13704 * 3 2 1 7 7 C 1.38822 * 119.99839 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99475 * 170.41866 * 7 2 1 9 9 N 1.36930 * 120.00100 * 350.42268 * 7 2 1 10 10 C 1.47432 * 125.64720 * 349.98021 * 9 7 2 11 11 C 1.54912 * 104.83072 * 204.09553 * 10 9 7 12 12 C 1.55155 * 101.58289 * 322.99089 * 11 10 9 13 13 H 1.09000 * 110.87277 * 277.06691 * 12 11 10 14 14 C 1.52996 * 110.71940 * 153.86422 * 12 11 10 15 15 C 1.52996 * 109.47400 * 180.02562 * 14 12 11 16 16 N 1.46497 * 109.47394 * 179.97438 * 15 14 12 17 17 C 1.34781 * 120.00264 * 180.02562 * 16 15 14 18 18 O 1.21696 * 119.99699 * 0.02562 * 17 16 15 19 19 C 1.46653 * 120.00204 * 180.02562 * 17 16 15 20 20 C 1.36549 * 125.98695 * 180.02562 * 19 17 16 21 21 C 1.40361 * 106.70364 * 179.97438 * 20 19 17 22 22 C 1.35126 * 107.12281 * 0.02562 * 21 20 19 23 23 O 1.33937 * 108.76622 * 0.25804 * 22 21 20 24 24 C 1.47019 * 125.64954 * 169.94379 * 9 7 2 25 25 H 0.96998 * 119.99581 * 359.97438 * 1 2 3 26 26 H 1.08993 * 110.36807 * 322.93889 * 10 9 7 27 27 H 1.09007 * 110.36402 * 85.14966 * 10 9 7 28 28 H 1.09001 * 111.00039 * 204.91644 * 11 10 9 29 29 H 1.08995 * 111.00114 * 81.07026 * 11 10 9 30 30 H 1.09006 * 109.47007 * 60.02326 * 14 12 11 31 31 H 1.08997 * 109.47273 * 300.02613 * 14 12 11 32 32 H 1.09006 * 109.47080 * 59.99997 * 15 14 12 33 33 H 1.08997 * 109.47103 * 300.00344 * 15 14 12 34 34 H 0.97004 * 120.00319 * 0.02562 * 16 15 14 35 35 H 1.07996 * 126.64377 * 0.02562 * 20 19 17 36 36 H 1.08010 * 126.44007 * 179.97438 * 21 20 19 37 37 H 1.07994 * 125.62275 * 180.02562 * 22 21 20 38 38 H 1.09001 * 109.88293 * 59.55641 * 24 9 7 39 39 H 1.08992 * 110.01143 * 298.46174 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4102 2.0970 -1.3964 5 1 1.4943 2.6258 0.7859 6 1 3.5888 1.4164 0.6108 7 6 2.0103 -1.2023 -0.0005 8 1 3.0790 -1.2086 -0.1562 9 7 1.3399 -2.3799 0.1962 10 6 -0.0653 -2.5077 0.6237 11 6 -0.1541 -3.9076 1.2809 12 6 0.7932 -4.7378 0.3749 13 1 0.2746 -5.0765 -0.5220 14 6 1.3733 -5.9265 1.1438 15 6 2.3019 -6.7237 0.2256 16 7 2.8579 -7.8616 0.9619 17 6 3.7088 -8.7093 0.3504 18 8 4.0155 -8.5291 -0.8134 19 6 4.2649 -9.8487 1.0874 20 6 5.1331 -10.7785 0.5912 21 6 5.3994 -11.6790 1.6345 22 6 4.6907 -11.2650 2.7080 23 8 4.0037 -10.1652 2.3726 24 6 1.9020 -3.7264 0.0155 25 1 -0.4849 0.8401 0.0004 26 1 -0.3135 -1.7320 1.3480 27 1 -0.7307 -2.4482 -0.2377 28 1 -1.1723 -4.2945 1.2400 29 1 0.2111 -3.8811 2.3076 30 1 0.5618 -6.5688 1.4862 31 1 1.9366 -5.5633 2.0034 32 1 3.1134 -6.0815 -0.1168 33 1 1.7386 -7.0869 -0.6340 34 1 2.6136 -8.0050 1.8897 35 1 5.5372 -10.8137 -0.4096 36 1 6.0482 -12.5413 1.5878 37 1 4.6772 -11.7442 3.6757 38 1 2.7571 -3.8630 0.6775 39 1 2.2095 -3.8662 -1.0207 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691870251.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:22:58 Heat of formation + Delta-G solvation = -27.343557 kcal Electronic energy + Delta-G solvation = -20764.623276 eV Core-core repulsion = 17480.393318 eV Total energy + Delta-G solvation = -3284.229958 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -43.62646 -40.63597 -39.40738 -36.59172 -34.82504 -34.02447 -32.68148 -31.17133 -30.42009 -28.18668 -26.63055 -24.57391 -23.28868 -22.66145 -21.96013 -21.52466 -20.75297 -19.47072 -18.85660 -17.43926 -17.32948 -16.94984 -16.91312 -16.62443 -16.01823 -15.64312 -15.23181 -14.82238 -14.27949 -14.13113 -13.94379 -13.84414 -13.62757 -13.53143 -13.33983 -13.03912 -12.86630 -12.69558 -12.27220 -11.97490 -11.83365 -11.73645 -11.44206 -11.37345 -11.29281 -11.04699 -10.67662 -10.31231 -9.63532 -8.85346 -7.89312 -5.23477 0.02402 1.43676 1.44395 1.45896 1.55861 1.65636 2.08026 2.20972 2.48959 3.29308 3.69952 3.71112 3.77105 3.93636 3.96390 4.11684 4.16151 4.30476 4.34081 4.61351 4.63227 4.69218 4.73930 4.87602 4.91371 4.96426 5.01128 5.09384 5.16072 5.24736 5.29449 5.40759 5.44625 5.50822 5.64097 5.76791 5.83901 6.21347 6.41287 6.97965 7.08720 7.77343 8.43767 9.22817 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.034583 B = 0.002838 C = 0.002745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 809.461691 B = 9863.703556 C =10196.528095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C -0.065 4.065 3 Si 0.978 3.022 4 H -0.287 1.287 5 H -0.290 1.290 6 H -0.269 1.269 7 C -0.247 4.247 8 H 0.075 0.925 9 N -0.628 5.628 10 C 0.173 3.827 11 C -0.121 4.121 12 C -0.083 4.083 13 H 0.080 0.920 14 C -0.100 4.100 15 C 0.121 3.879 16 N -0.704 5.704 17 C 0.596 3.404 18 O -0.566 6.566 19 C -0.109 4.109 20 C -0.128 4.128 21 C -0.236 4.236 22 C 0.013 3.987 23 O -0.169 6.169 24 C 0.133 3.867 25 H 0.248 0.752 26 H 0.031 0.969 27 H -0.006 1.006 28 H 0.089 0.911 29 H 0.071 0.929 30 H 0.100 0.900 31 H 0.076 0.924 32 H 0.054 0.946 33 H 0.069 0.931 34 H 0.418 0.582 35 H 0.156 0.844 36 H 0.183 0.817 37 H 0.257 0.743 38 H 0.028 0.972 39 H 0.009 0.991 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.126 -25.457 9.033 27.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.597 5.597 2 C -0.259 4.259 3 Si 0.806 3.194 4 H -0.214 1.214 5 H -0.216 1.216 6 H -0.194 1.194 7 C -0.376 4.376 8 H 0.093 0.907 9 N -0.355 5.355 10 C 0.048 3.952 11 C -0.160 4.160 12 C -0.103 4.103 13 H 0.099 0.901 14 C -0.138 4.138 15 C -0.003 4.003 16 N -0.355 5.355 17 C 0.383 3.617 18 O -0.447 6.447 19 C -0.161 4.161 20 C -0.149 4.149 21 C -0.254 4.254 22 C -0.057 4.057 23 O -0.065 6.065 24 C 0.008 3.992 25 H 0.058 0.942 26 H 0.050 0.950 27 H 0.012 0.988 28 H 0.107 0.893 29 H 0.090 0.910 30 H 0.118 0.882 31 H 0.095 0.905 32 H 0.073 0.927 33 H 0.087 0.913 34 H 0.255 0.745 35 H 0.174 0.826 36 H 0.201 0.799 37 H 0.273 0.727 38 H 0.046 0.954 39 H 0.028 0.972 Dipole moment (debyes) X Y Z Total from point charges 6.082 -24.907 8.381 26.974 hybrid contribution 0.381 1.200 -0.268 1.287 sum 6.462 -23.707 8.112 25.877 Atomic orbital electron populations 1.70167 1.06374 1.25501 1.57680 1.25680 0.96558 1.01154 1.02468 0.85083 0.77835 0.79121 0.77391 1.21365 1.21604 1.19406 1.19408 0.91567 0.84439 1.42170 0.90724 1.44862 1.10285 1.01072 1.79259 1.21250 0.84619 0.94218 0.95127 1.22882 0.99764 0.94716 0.98619 1.21999 0.95635 0.93762 0.98892 0.90142 1.21634 0.99093 0.95387 0.97653 1.21433 0.97023 0.86402 0.95411 1.45827 1.45748 1.27243 1.16681 1.16846 0.78721 0.80817 0.85270 1.90871 1.62132 1.74479 1.17255 1.21773 1.07949 1.01764 0.84593 1.22275 0.96949 0.93875 1.01835 1.22226 1.06646 1.04024 0.92529 1.25417 0.92440 0.85668 1.02153 1.84061 1.56544 1.39995 1.25870 1.21577 0.95801 0.84973 0.96884 0.94235 0.95006 0.98808 0.89284 0.90990 0.88184 0.90524 0.92715 0.91278 0.74466 0.82643 0.79938 0.72729 0.95409 0.97248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.45 10.68 21.66 0.23 -58.22 16 2 C -0.07 -3.83 5.40 84.86 0.46 -3.38 16 3 Si 0.98 46.92 29.56 68.60 2.03 48.94 16 4 H -0.29 -13.56 7.11 99.48 0.71 -12.85 16 5 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 6 H -0.27 -12.28 7.11 99.48 0.71 -11.58 16 7 C -0.25 -14.43 10.24 84.04 0.86 -13.57 16 8 H 0.07 4.24 7.85 -2.91 -0.02 4.21 16 9 N -0.63 -33.55 3.39 -691.96 -2.35 -35.90 16 10 C 0.17 8.62 5.42 86.85 0.47 9.09 16 11 C -0.12 -4.20 6.53 31.99 0.21 -3.99 16 12 C -0.08 -2.64 2.98 -9.61 -0.03 -2.67 16 13 H 0.08 2.48 8.14 -2.39 -0.02 2.46 16 14 C -0.10 -2.24 4.71 30.59 0.14 -2.09 16 15 C 0.12 2.97 5.52 86.38 0.48 3.45 16 16 N -0.70 -15.40 5.55 -467.11 -2.59 -17.99 16 17 C 0.60 15.85 7.79 86.44 0.67 16.52 16 18 O -0.57 -19.53 16.86 -4.34 -0.07 -19.61 16 19 C -0.11 -2.35 7.13 24.07 0.17 -2.18 16 20 C -0.13 -2.44 10.62 22.39 0.24 -2.21 16 21 C -0.24 -2.75 10.87 22.07 0.24 -2.51 16 22 C 0.01 0.12 12.08 67.10 0.81 0.93 16 23 O -0.17 -2.72 10.40 -5.18 -0.05 -2.78 16 24 C 0.13 5.59 5.99 86.73 0.52 6.11 16 25 H 0.25 14.78 8.31 -92.71 -0.77 14.01 16 26 H 0.03 1.78 6.93 -2.39 -0.02 1.76 16 27 H -0.01 -0.34 8.07 -2.38 -0.02 -0.35 16 28 H 0.09 2.58 8.14 -2.39 -0.02 2.56 16 29 H 0.07 2.34 8.05 -2.39 -0.02 2.32 16 30 H 0.10 1.69 8.14 -2.38 -0.02 1.67 16 31 H 0.08 1.70 8.06 -2.39 -0.02 1.68 16 32 H 0.05 1.61 7.49 -2.38 -0.02 1.59 16 33 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 34 H 0.42 6.72 8.23 -92.71 -0.76 5.96 16 35 H 0.16 2.96 8.06 -2.91 -0.02 2.94 16 36 H 0.18 1.04 8.06 -2.91 -0.02 1.02 16 37 H 0.26 -0.31 8.06 -2.91 -0.02 -0.34 16 38 H 0.03 1.14 7.76 -2.39 -0.02 1.12 16 39 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 Total: -1.00 -77.52 328.69 2.72 -74.80 By element: Atomic # 1 Polarization: 6.97 SS G_CDS: 0.29 Total: 7.25 kcal Atomic # 6 Polarization: -1.74 SS G_CDS: 5.24 Total: 3.50 kcal Atomic # 7 Polarization: -107.40 SS G_CDS: -4.71 Total: -112.11 kcal Atomic # 8 Polarization: -22.26 SS G_CDS: -0.13 Total: -22.39 kcal Atomic # 14 Polarization: 46.92 SS G_CDS: 2.03 Total: 48.94 kcal Total: -77.52 2.72 -74.80 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691870251.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.457 kcal (2) G-P(sol) polarization free energy of solvation -77.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.800 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds