Wall clock time and date at job start Tue Mar 31 2020 00:31:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86798 * 119.99858 * 2 1 4 4 H 1.48504 * 109.47392 * 239.99750 * 3 2 1 5 5 H 1.48499 * 109.47731 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46938 * 120.00049 * 3 2 1 7 7 C 1.38803 * 119.99986 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00204 * 179.97438 * 7 2 1 9 9 N 1.36939 * 120.00243 * 0.02562 * 7 2 1 10 10 C 1.46495 * 120.00142 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.47108 * 185.01383 * 10 9 7 12 12 H 1.08998 * 109.87542 * 306.24360 * 11 10 9 13 13 C 1.54321 * 110.01038 * 67.34073 * 11 10 9 14 14 C 1.55447 * 102.97007 * 141.68638 * 13 11 10 15 15 C 1.54915 * 101.44658 * 324.51322 * 14 13 11 16 16 N 1.47019 * 109.88356 * 185.22839 * 11 10 9 17 17 C 1.34776 * 125.65170 * 61.50678 * 16 11 10 18 18 O 1.21278 * 120.00122 * 355.07483 * 17 16 11 19 19 C 1.50702 * 119.99894 * 175.07894 * 17 16 11 20 20 C 1.50701 * 109.46913 * 179.97438 * 19 17 16 21 21 C 1.41379 * 126.57790 * 90.00040 * 20 19 17 22 22 C 1.34514 * 106.84059 * 179.97438 * 21 20 19 23 23 O 1.34301 * 108.42475 * 359.97438 * 22 21 20 24 24 C 1.34315 * 109.47120 * 359.77152 * 23 22 21 25 25 H 0.97003 * 119.99724 * 0.02562 * 1 2 3 26 26 H 0.97002 * 119.99650 * 359.97438 * 9 7 2 27 27 H 1.08998 * 109.47736 * 65.01401 * 10 9 7 28 28 H 1.09004 * 109.47336 * 305.01075 * 10 9 7 29 29 H 1.09000 * 110.72186 * 260.04290 * 13 11 10 30 30 H 1.08998 * 110.72250 * 23.14086 * 13 11 10 31 31 H 1.09001 * 111.11699 * 206.46602 * 14 13 11 32 32 H 1.08996 * 111.01682 * 82.52278 * 14 13 11 33 33 H 1.09000 * 110.36622 * 278.10817 * 15 14 13 34 34 H 1.09007 * 110.35983 * 155.90139 * 15 14 13 35 35 H 1.08997 * 109.47141 * 299.99589 * 19 17 16 36 36 H 1.09002 * 109.47053 * 60.00450 * 19 17 16 37 37 H 1.08002 * 126.58395 * 359.97438 * 21 20 19 38 38 H 1.08002 * 125.78884 * 180.02562 * 22 21 20 39 39 H 1.08002 * 125.78872 * 180.23804 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6965 -1.2125 5 1 1.2853 2.7465 0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0016 10 6 2.0581 -3.6567 -0.0016 11 6 1.0687 -4.8168 -0.1290 12 1 0.3059 -4.7401 0.6459 13 6 0.4056 -4.7948 -1.5222 14 6 0.3091 -6.3029 -1.8866 15 6 1.6128 -6.8551 -1.2579 16 7 1.7807 -6.0971 -0.0046 17 6 2.4720 -6.5097 1.0763 18 8 2.6190 -5.7655 2.0225 19 6 3.0624 -7.8959 1.1091 20 6 3.7799 -8.1055 2.4177 21 6 3.2228 -8.6198 3.6110 22 6 4.2092 -8.6375 4.5254 23 8 5.3278 -8.1644 3.9524 24 6 5.0747 -7.8452 2.6725 25 1 -0.4850 0.8401 -0.0004 26 1 0.3556 -2.3880 -0.0016 27 1 2.6150 -3.7548 0.9302 28 1 2.7510 -3.6762 -0.8428 29 1 -0.5867 -4.3468 -1.4700 30 1 1.0307 -4.2616 -2.2385 31 1 0.3052 -6.4464 -2.9671 32 1 -0.5689 -6.7599 -1.4302 33 1 2.4584 -6.6804 -1.9231 34 1 1.5107 -7.9196 -1.0467 35 1 2.2653 -8.6327 1.0093 36 1 3.7679 -8.0099 0.2860 37 1 2.2014 -8.9375 3.7599 38 1 4.1173 -8.9756 5.5470 39 1 5.7890 -7.4447 1.9683 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001698729082.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:31:59 Heat of formation + Delta-G solvation = -3.170617 kcal Electronic energy + Delta-G solvation = -21450.916844 eV Core-core repulsion = 18167.735103 eV Total energy + Delta-G solvation = -3283.181741 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.57161 -39.94329 -37.36545 -34.49013 -33.95999 -31.77197 -31.24894 -30.30117 -28.80110 -27.61103 -25.02241 -23.21115 -21.99454 -21.64805 -21.17220 -20.14478 -18.83065 -17.43127 -17.24757 -16.67134 -16.26657 -15.80231 -15.10913 -14.68501 -14.49410 -14.31673 -13.67559 -13.37170 -13.19020 -13.11150 -12.83700 -12.77556 -12.49744 -12.42183 -12.12226 -11.66418 -11.37684 -11.11547 -10.87846 -10.78526 -10.51232 -10.41756 -10.03522 -9.90809 -9.68353 -9.42120 -8.77231 -8.55788 -8.38100 -6.83421 -5.69628 -2.97443 1.74663 2.48133 2.85053 3.10475 3.25671 3.49326 3.53212 3.55026 4.59118 4.62265 4.67582 4.69647 4.72034 4.91603 5.00917 5.13431 5.30002 5.35004 5.42026 5.46587 5.60266 5.64049 5.64580 5.83517 5.92817 5.96228 6.09708 6.11008 6.13271 6.22690 6.42223 6.46174 6.61716 6.87246 7.06930 7.09977 7.74042 7.77858 8.41826 8.50053 9.60263 10.17606 10.53246 11.53511 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.017442 B = 0.004252 C = 0.003587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1604.917316 B = 6584.100222 C = 7803.424534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.015 4.015 3 Si 0.907 3.093 4 H -0.287 1.287 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.234 4.234 8 H 0.068 0.932 9 N -0.729 5.729 10 C 0.146 3.854 11 C 0.131 3.869 12 H 0.073 0.927 13 C -0.120 4.120 14 C -0.135 4.135 15 C 0.100 3.900 16 N -0.615 5.615 17 C 0.523 3.477 18 O -0.518 6.518 19 C -0.064 4.064 20 C -0.163 4.163 21 C -0.198 4.198 22 C -0.046 4.046 23 O -0.177 6.177 24 C -0.026 4.026 25 H 0.255 0.745 26 H 0.383 0.617 27 H 0.035 0.965 28 H 0.019 0.981 29 H 0.083 0.917 30 H 0.082 0.918 31 H 0.081 0.919 32 H 0.073 0.927 33 H 0.068 0.932 34 H 0.072 0.928 35 H 0.099 0.901 36 H 0.098 0.902 37 H 0.145 0.855 38 H 0.200 0.800 39 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.512 -22.607 -0.734 23.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.210 4.210 3 Si 0.739 3.261 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.365 4.365 8 H 0.086 0.914 9 N -0.373 5.373 10 C 0.017 3.983 11 C 0.028 3.972 12 H 0.091 0.909 13 C -0.158 4.158 14 C -0.173 4.173 15 C -0.024 4.024 16 N -0.351 5.351 17 C 0.310 3.690 18 O -0.393 6.393 19 C -0.104 4.104 20 C -0.164 4.164 21 C -0.217 4.217 22 C -0.113 4.113 23 O -0.073 6.073 24 C -0.094 4.094 25 H 0.064 0.936 26 H 0.216 0.784 27 H 0.053 0.947 28 H 0.037 0.963 29 H 0.101 0.899 30 H 0.101 0.899 31 H 0.100 0.900 32 H 0.091 0.909 33 H 0.086 0.914 34 H 0.091 0.909 35 H 0.117 0.883 36 H 0.116 0.884 37 H 0.163 0.837 38 H 0.217 0.783 39 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges 5.051 -22.075 0.011 22.646 hybrid contribution -0.146 0.970 -0.129 0.990 sum 4.905 -21.105 -0.118 21.668 Atomic orbital electron populations 1.69651 1.05060 1.25637 1.58126 1.24706 0.95530 0.97565 1.03227 0.86257 0.78504 0.83549 0.77839 1.21333 1.21687 1.21302 1.19171 0.90973 0.84077 1.42278 0.91374 1.42202 1.05720 0.99763 1.89651 1.20978 0.93383 0.85071 0.98830 1.21801 0.94502 0.83316 0.97579 0.90856 1.22706 1.02061 0.95164 0.95881 1.22847 0.96864 0.96714 1.00864 1.22315 0.98347 0.95803 0.85899 1.48571 1.52662 1.19383 1.14507 1.20197 0.78391 0.88850 0.81538 1.90773 1.57629 1.55759 1.35108 1.19967 1.00286 0.95020 0.95174 1.19799 0.94102 1.06257 0.96272 1.21650 1.00543 1.06337 0.93209 1.23923 0.84083 1.03893 0.99443 1.84056 1.36242 1.63539 1.23453 1.23791 0.97637 1.03951 0.84021 0.93555 0.78385 0.94735 0.96332 0.89884 0.89941 0.90019 0.90850 0.91363 0.90944 0.88257 0.88383 0.83721 0.78303 0.78349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -28.99 13.06 55.49 0.72 -28.27 16 2 C -0.01 -0.44 5.50 -17.43 -0.10 -0.53 16 3 Si 0.91 23.21 29.55 -169.99 -5.02 18.19 16 4 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 5 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 6 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 7 C -0.23 -6.89 9.99 -15.06 -0.15 -7.04 16 8 H 0.07 1.97 7.83 -52.49 -0.41 1.56 16 9 N -0.73 -19.54 5.42 -59.91 -0.32 -19.86 16 10 C 0.15 3.28 5.66 -4.04 -0.02 3.25 16 11 C 0.13 2.33 2.94 -66.95 -0.20 2.13 16 12 H 0.07 1.44 8.14 -51.93 -0.42 1.01 16 13 C -0.12 -1.76 6.25 -24.74 -0.15 -1.92 16 14 C -0.13 -1.38 7.11 -24.42 -0.17 -1.55 16 15 C 0.10 1.01 6.73 -2.52 -0.02 0.99 16 16 N -0.62 -9.01 3.07 -163.01 -0.50 -9.51 16 17 C 0.52 8.19 7.66 -10.98 -0.08 8.10 16 18 O -0.52 -10.78 14.82 5.56 0.08 -10.70 16 19 C -0.06 -0.70 5.15 -29.03 -0.15 -0.85 16 20 C -0.16 -2.01 4.66 -104.74 -0.49 -2.50 16 21 C -0.20 -2.33 10.87 -39.70 -0.43 -2.76 16 22 C -0.05 -0.50 12.09 29.42 0.36 -0.14 16 23 O -0.18 -2.20 10.65 5.68 0.06 -2.14 16 24 C -0.03 -0.31 12.01 29.42 0.35 0.04 16 25 H 0.25 7.63 8.31 -40.82 -0.34 7.29 16 26 H 0.38 10.56 7.61 -40.82 -0.31 10.25 16 27 H 0.03 0.88 6.54 -51.93 -0.34 0.54 16 28 H 0.02 0.42 8.03 -51.93 -0.42 0.00 16 29 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 30 H 0.08 1.31 7.77 -51.93 -0.40 0.91 16 31 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 32 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.07 0.53 7.47 -51.92 -0.39 0.14 16 35 H 0.10 0.85 7.95 -51.93 -0.41 0.44 16 36 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.14 1.46 8.06 -52.49 -0.42 1.04 16 38 H 0.20 1.36 8.06 -52.49 -0.42 0.93 16 39 H 0.20 1.80 8.06 -52.49 -0.42 1.38 16 LS Contribution 329.04 15.07 4.96 4.96 Total: -1.00 -36.39 329.04 -6.90 -43.29 By element: Atomic # 1 Polarization: 12.43 SS G_CDS: -5.62 Total: 6.81 kcal Atomic # 6 Polarization: -1.52 SS G_CDS: -1.26 Total: -2.77 kcal Atomic # 7 Polarization: -57.54 SS G_CDS: -0.10 Total: -57.64 kcal Atomic # 8 Polarization: -12.98 SS G_CDS: 0.14 Total: -12.83 kcal Atomic # 14 Polarization: 23.21 SS G_CDS: -5.02 Total: 18.19 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -36.39 -6.90 -43.29 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698729082.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.123 kcal (2) G-P(sol) polarization free energy of solvation -36.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.294 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds