Wall clock time and date at job start Tue Mar 31 2020 00:31:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86798 * 119.99858 * 2 1 4 4 H 1.48504 * 109.47392 * 239.99750 * 3 2 1 5 5 H 1.48499 * 109.47731 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46938 * 120.00049 * 3 2 1 7 7 C 1.38803 * 119.99986 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00204 * 179.97438 * 7 2 1 9 9 N 1.36939 * 120.00243 * 0.02562 * 7 2 1 10 10 C 1.46495 * 120.00142 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.47108 * 185.01383 * 10 9 7 12 12 H 1.08998 * 109.87542 * 306.24360 * 11 10 9 13 13 C 1.54321 * 110.01038 * 67.34073 * 11 10 9 14 14 C 1.55447 * 102.97007 * 141.68638 * 13 11 10 15 15 C 1.54915 * 101.44658 * 324.51322 * 14 13 11 16 16 N 1.47019 * 109.88356 * 185.22839 * 11 10 9 17 17 C 1.34776 * 125.65170 * 61.50678 * 16 11 10 18 18 O 1.21278 * 120.00122 * 355.07483 * 17 16 11 19 19 C 1.50702 * 119.99894 * 175.07894 * 17 16 11 20 20 C 1.50701 * 109.46913 * 179.97438 * 19 17 16 21 21 C 1.41379 * 126.57790 * 90.00040 * 20 19 17 22 22 C 1.34514 * 106.84059 * 179.97438 * 21 20 19 23 23 O 1.34301 * 108.42475 * 359.97438 * 22 21 20 24 24 C 1.34315 * 109.47120 * 359.77152 * 23 22 21 25 25 H 0.97003 * 119.99724 * 0.02562 * 1 2 3 26 26 H 0.97002 * 119.99650 * 359.97438 * 9 7 2 27 27 H 1.08998 * 109.47736 * 65.01401 * 10 9 7 28 28 H 1.09004 * 109.47336 * 305.01075 * 10 9 7 29 29 H 1.09000 * 110.72186 * 260.04290 * 13 11 10 30 30 H 1.08998 * 110.72250 * 23.14086 * 13 11 10 31 31 H 1.09001 * 111.11699 * 206.46602 * 14 13 11 32 32 H 1.08996 * 111.01682 * 82.52278 * 14 13 11 33 33 H 1.09000 * 110.36622 * 278.10817 * 15 14 13 34 34 H 1.09007 * 110.35983 * 155.90139 * 15 14 13 35 35 H 1.08997 * 109.47141 * 299.99589 * 19 17 16 36 36 H 1.09002 * 109.47053 * 60.00450 * 19 17 16 37 37 H 1.08002 * 126.58395 * 359.97438 * 21 20 19 38 38 H 1.08002 * 125.78884 * 180.02562 * 22 21 20 39 39 H 1.08002 * 125.78872 * 180.23804 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6965 -1.2125 5 1 1.2853 2.7465 0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0016 10 6 2.0581 -3.6567 -0.0016 11 6 1.0687 -4.8168 -0.1290 12 1 0.3059 -4.7401 0.6459 13 6 0.4056 -4.7948 -1.5222 14 6 0.3091 -6.3029 -1.8866 15 6 1.6128 -6.8551 -1.2579 16 7 1.7807 -6.0971 -0.0046 17 6 2.4720 -6.5097 1.0763 18 8 2.6190 -5.7655 2.0225 19 6 3.0624 -7.8959 1.1091 20 6 3.7799 -8.1055 2.4177 21 6 3.2228 -8.6198 3.6110 22 6 4.2092 -8.6375 4.5254 23 8 5.3278 -8.1644 3.9524 24 6 5.0747 -7.8452 2.6725 25 1 -0.4850 0.8401 -0.0004 26 1 0.3556 -2.3880 -0.0016 27 1 2.6150 -3.7548 0.9302 28 1 2.7510 -3.6762 -0.8428 29 1 -0.5867 -4.3468 -1.4700 30 1 1.0307 -4.2616 -2.2385 31 1 0.3052 -6.4464 -2.9671 32 1 -0.5689 -6.7599 -1.4302 33 1 2.4584 -6.6804 -1.9231 34 1 1.5107 -7.9196 -1.0467 35 1 2.2653 -8.6327 1.0093 36 1 3.7679 -8.0099 0.2860 37 1 2.2014 -8.9375 3.7599 38 1 4.1173 -8.9756 5.5470 39 1 5.7890 -7.4447 1.9683 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698729082.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:31:58 Heat of formation + Delta-G solvation = -28.696325 kcal Electronic energy + Delta-G solvation = -21452.023722 eV Core-core repulsion = 18167.735103 eV Total energy + Delta-G solvation = -3284.288619 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -43.42794 -41.15554 -38.63606 -36.43118 -34.94449 -33.51627 -32.61991 -31.22496 -30.32615 -28.57652 -26.73838 -24.82731 -23.53663 -22.48793 -22.18399 -21.23930 -20.11868 -19.10340 -18.33523 -18.02668 -17.46687 -16.76936 -16.46383 -16.21490 -15.68568 -15.54530 -15.09558 -15.06113 -14.98775 -14.11591 -14.08399 -13.68118 -13.62916 -13.54281 -13.32200 -12.99652 -12.91100 -12.74977 -12.41562 -12.24760 -12.02105 -11.91752 -11.80327 -11.57922 -11.09785 -10.89972 -10.49507 -9.63403 -9.41521 -9.06017 -7.99463 -5.29584 0.88509 1.43087 1.47614 1.53470 1.56601 1.67983 2.15104 2.34152 2.54225 3.32843 3.56361 3.67651 3.82367 3.91694 3.97406 4.04843 4.13399 4.19315 4.31787 4.37554 4.53183 4.56167 4.60554 4.74778 4.80219 4.88620 4.96820 5.05574 5.11822 5.15220 5.17027 5.30987 5.36644 5.41249 5.49656 5.60683 6.21224 6.21922 6.62879 7.24347 7.28323 7.99849 8.27356 9.23697 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.017442 B = 0.004252 C = 0.003587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1604.917316 B = 6584.100222 C = 7803.424534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.966 5.966 2 C -0.069 4.069 3 Si 0.977 3.023 4 H -0.273 1.273 5 H -0.288 1.288 6 H -0.283 1.283 7 C -0.253 4.253 8 H 0.067 0.933 9 N -0.737 5.737 10 C 0.153 3.847 11 C 0.137 3.863 12 H 0.046 0.954 13 C -0.118 4.118 14 C -0.119 4.119 15 C 0.094 3.906 16 N -0.614 5.614 17 C 0.515 3.485 18 O -0.583 6.583 19 C -0.051 4.051 20 C -0.182 4.182 21 C -0.221 4.221 22 C -0.048 4.048 23 O -0.192 6.192 24 C -0.043 4.043 25 H 0.254 0.746 26 H 0.375 0.625 27 H 0.001 0.999 28 H 0.020 0.980 29 H 0.073 0.927 30 H 0.069 0.931 31 H 0.112 0.888 32 H 0.084 0.916 33 H 0.083 0.917 34 H 0.115 0.885 35 H 0.130 0.870 36 H 0.131 0.869 37 H 0.156 0.844 38 H 0.233 0.767 39 H 0.219 0.781 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.989 -24.519 -2.133 25.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.616 5.616 2 C -0.262 4.262 3 Si 0.805 3.195 4 H -0.199 1.199 5 H -0.214 1.214 6 H -0.209 1.209 7 C -0.385 4.385 8 H 0.085 0.915 9 N -0.381 5.381 10 C 0.026 3.974 11 C 0.033 3.967 12 H 0.064 0.936 13 C -0.156 4.156 14 C -0.157 4.157 15 C -0.027 4.027 16 N -0.348 5.348 17 C 0.305 3.695 18 O -0.462 6.462 19 C -0.090 4.090 20 C -0.184 4.184 21 C -0.240 4.240 22 C -0.115 4.115 23 O -0.088 6.088 24 C -0.110 4.110 25 H 0.063 0.937 26 H 0.207 0.793 27 H 0.019 0.981 28 H 0.038 0.962 29 H 0.091 0.909 30 H 0.087 0.913 31 H 0.130 0.870 32 H 0.103 0.897 33 H 0.101 0.899 34 H 0.133 0.867 35 H 0.148 0.852 36 H 0.149 0.851 37 H 0.174 0.826 38 H 0.249 0.751 39 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges 5.541 -24.046 -1.433 24.718 hybrid contribution -0.291 1.552 0.352 1.618 sum 5.250 -22.494 -1.081 23.124 Atomic orbital electron populations 1.69806 1.06513 1.26382 1.58925 1.25573 0.96509 1.01022 1.03082 0.85176 0.77296 0.78883 0.78171 1.19897 1.21382 1.20942 1.19520 0.91212 0.85450 1.42313 0.91529 1.42337 1.05492 1.00749 1.89505 1.20953 0.94133 0.85477 0.96877 1.21502 0.92949 0.83483 0.98810 0.93616 1.22612 1.00682 0.98949 0.93406 1.22868 0.97519 0.92408 1.02914 1.22703 0.98758 0.97449 0.83785 1.48703 1.51703 1.18331 1.16076 1.21196 0.77503 0.90215 0.80585 1.90745 1.60050 1.57889 1.37524 1.20018 1.01502 0.91898 0.95591 1.20149 0.94490 1.06490 0.97260 1.21985 1.01437 1.07053 0.93567 1.24636 0.83406 1.02780 1.00684 1.84051 1.37102 1.63828 1.23855 1.24295 0.98398 1.04038 0.84259 0.93719 0.79251 0.98094 0.96189 0.90869 0.91251 0.86998 0.89708 0.89882 0.86729 0.85199 0.85132 0.82605 0.75079 0.76486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.97 13.06 21.65 0.28 -60.69 16 2 C -0.07 -4.17 5.50 84.86 0.47 -3.71 16 3 Si 0.98 48.11 29.55 68.60 2.03 50.14 16 4 H -0.27 -12.79 7.11 99.48 0.71 -12.09 16 5 H -0.29 -13.96 7.11 99.48 0.71 -13.26 16 6 H -0.28 -13.71 7.11 99.48 0.71 -13.00 16 7 C -0.25 -15.33 9.99 84.03 0.84 -14.49 16 8 H 0.07 3.95 7.83 -2.91 -0.02 3.93 16 9 N -0.74 -41.20 5.42 -343.46 -1.86 -43.06 16 10 C 0.15 7.20 5.66 86.38 0.49 7.69 16 11 C 0.14 4.98 2.94 45.34 0.13 5.11 16 12 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 13 C -0.12 -3.41 6.25 31.88 0.20 -3.21 16 14 C -0.12 -2.03 7.11 32.09 0.23 -1.80 16 15 C 0.09 1.53 6.73 86.86 0.58 2.11 16 16 N -0.61 -17.22 3.07 -788.04 -2.42 -19.64 16 17 C 0.51 15.79 7.66 87.66 0.67 16.46 16 18 O -0.58 -25.18 14.82 -3.02 -0.04 -25.22 16 19 C -0.05 -0.97 5.15 29.10 0.15 -0.82 16 20 C -0.18 -4.28 4.66 -19.94 -0.09 -4.38 16 21 C -0.22 -5.00 10.87 22.19 0.24 -4.75 16 22 C -0.05 -1.00 12.09 66.97 0.81 -0.19 16 23 O -0.19 -4.68 10.65 -2.57 -0.03 -4.71 16 24 C -0.04 -0.98 12.01 66.97 0.80 -0.18 16 25 H 0.25 15.41 8.31 -92.71 -0.77 14.64 16 26 H 0.38 21.69 7.61 -92.71 -0.71 20.99 16 27 H 0.00 0.06 6.54 -2.39 -0.02 0.05 16 28 H 0.02 0.93 8.03 -2.38 -0.02 0.91 16 29 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 30 H 0.07 2.18 7.77 -2.39 -0.02 2.16 16 31 H 0.11 1.31 8.14 -2.39 -0.02 1.29 16 32 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 33 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 34 H 0.11 1.00 7.47 -2.38 -0.02 0.98 16 35 H 0.13 1.68 7.95 -2.39 -0.02 1.66 16 36 H 0.13 1.63 8.14 -2.39 -0.02 1.61 16 37 H 0.16 2.98 8.06 -2.91 -0.02 2.96 16 38 H 0.23 2.77 8.06 -2.91 -0.02 2.75 16 39 H 0.22 3.77 8.06 -2.91 -0.02 3.74 16 Total: -1.00 -83.29 329.04 3.83 -79.46 By element: Atomic # 1 Polarization: 25.51 SS G_CDS: 0.34 Total: 25.85 kcal Atomic # 6 Polarization: -7.66 SS G_CDS: 5.52 Total: -2.14 kcal Atomic # 7 Polarization: -119.39 SS G_CDS: -3.99 Total: -123.38 kcal Atomic # 8 Polarization: -29.86 SS G_CDS: -0.07 Total: -29.93 kcal Atomic # 14 Polarization: 48.11 SS G_CDS: 2.03 Total: 50.14 kcal Total: -83.29 3.83 -79.46 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698729082.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.765 kcal (2) G-P(sol) polarization free energy of solvation -83.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.461 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds