Wall clock time and date at job start Tue Mar 31 2020 00:02:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86806 * 119.99700 * 2 1 4 4 H 1.48498 * 109.47044 * 269.99479 * 3 2 1 5 5 H 1.48500 * 109.47460 * 29.99972 * 3 2 1 6 6 H 1.48509 * 109.47074 * 149.99609 * 3 2 1 7 7 C 1.38806 * 120.00306 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99875 * 0.02562 * 7 2 1 9 9 N 1.36937 * 120.00161 * 180.02562 * 7 2 1 10 10 C 1.46500 * 120.00028 * 180.02562 * 9 7 2 11 11 C 1.53003 * 109.47377 * 180.02562 * 10 9 7 12 12 H 1.08994 * 109.47229 * 59.99764 * 11 10 9 13 13 O 1.42904 * 109.46573 * 299.99904 * 11 10 9 14 14 C 1.52999 * 109.47015 * 180.02562 * 11 10 9 15 15 N 1.46506 * 109.46684 * 184.99978 * 14 11 10 16 16 C 1.34777 * 119.99873 * 180.02562 * 15 14 11 17 17 O 1.21284 * 119.99754 * 359.97438 * 16 15 14 18 18 C 1.50696 * 120.00137 * 179.97438 * 16 15 14 19 19 C 1.50699 * 109.47192 * 179.97438 * 18 16 15 20 20 C 1.38236 * 120.00094 * 269.72448 * 19 18 16 21 21 C 1.38231 * 120.00206 * 179.76822 * 20 19 18 22 22 C 1.38237 * 119.99761 * 0.50865 * 21 20 19 23 23 C 1.38236 * 120.00108 * 359.74568 * 22 21 20 24 24 C 1.38234 * 119.99928 * 359.97438 * 23 22 21 25 25 H 0.96997 * 119.99879 * 0.02562 * 1 2 3 26 26 H 0.96997 * 119.99989 * 0.02562 * 9 7 2 27 27 H 1.08999 * 109.47565 * 59.99942 * 10 9 7 28 28 H 1.09000 * 109.47293 * 300.00365 * 10 9 7 29 29 H 0.96695 * 113.99906 * 300.00024 * 13 11 10 30 30 H 1.09000 * 109.47486 * 64.99912 * 14 11 10 31 31 H 1.09001 * 109.47362 * 304.99190 * 14 11 10 32 32 H 0.96995 * 120.00050 * 359.72237 * 15 14 11 33 33 H 1.09004 * 109.47043 * 299.99732 * 18 16 15 34 34 H 1.09000 * 109.46978 * 59.99653 * 18 16 15 35 35 H 1.08002 * 119.99598 * 359.97438 * 20 19 18 36 36 H 1.07997 * 120.00204 * 180.23445 * 21 20 19 37 37 H 1.08000 * 120.00206 * 179.72980 * 22 21 20 38 38 H 1.07998 * 120.00494 * 179.97438 * 23 22 21 39 39 H 1.08002 * 120.00380 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6528 0.7000 6 1 3.5477 1.4403 0.7002 7 6 2.0103 -1.2021 0.0005 8 1 1.4703 -2.1374 0.0005 9 7 3.3796 -1.2020 0.0011 10 6 4.1122 -2.4707 0.0011 11 6 5.6165 -2.1912 0.0024 12 1 5.8791 -1.6200 0.8927 13 8 5.9625 -1.4413 -1.1639 14 6 6.3814 -3.5162 0.0017 15 7 7.8171 -3.2512 0.1233 16 6 8.6922 -4.2760 0.1440 17 8 8.2910 -5.4177 0.0623 18 6 10.1691 -4.0034 0.2685 19 6 10.9226 -5.3085 0.2680 20 6 11.1824 -5.9571 1.4608 21 6 11.8693 -7.1567 1.4599 22 6 12.3057 -7.7023 0.2671 23 6 12.0505 -7.0511 -0.9252 24 6 11.3585 -5.8545 -0.9248 25 1 -0.4850 0.8400 -0.0004 26 1 3.8646 -0.3620 0.0014 27 1 3.8493 -3.0422 -0.8891 28 1 3.8485 -3.0426 0.8908 29 1 5.7563 -1.8898 -1.9953 30 1 6.1876 -4.0472 -0.9302 31 1 6.0521 -4.1263 0.8428 32 1 8.1383 -2.3380 0.1846 33 1 10.4981 -3.3932 -0.5727 34 1 10.3632 -3.4725 1.2004 35 1 10.8456 -5.5283 2.3930 36 1 12.0690 -7.6653 2.3915 37 1 12.8463 -8.6373 0.2668 38 1 12.3918 -7.4772 -1.8571 39 1 11.1595 -5.3454 -1.8563 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699047558.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:02:41 Heat of formation + Delta-G solvation = -54.333446 kcal Electronic energy + Delta-G solvation = -20391.915241 eV Core-core repulsion = 17106.514914 eV Total energy + Delta-G solvation = -3285.400328 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.23539 -39.00029 -37.73226 -34.51577 -34.13312 -33.14476 -31.50186 -31.11790 -29.75141 -27.84465 -25.37727 -22.82080 -22.52072 -21.76818 -21.49752 -20.32056 -17.78820 -17.50187 -17.00221 -16.44104 -16.22476 -15.64884 -15.46726 -15.00448 -14.60666 -14.54671 -13.82515 -13.77991 -13.64304 -13.28036 -13.24410 -12.92120 -12.66781 -12.43252 -12.24036 -11.94342 -11.39200 -11.31427 -11.24288 -10.88538 -10.83835 -10.21822 -10.14038 -9.77319 -9.57687 -9.19075 -9.12494 -8.94949 -8.94632 -7.27987 -5.79469 -3.15884 1.09330 1.19559 2.51631 3.01850 3.38018 3.42665 3.45284 3.62683 4.35566 4.49085 4.55775 4.58045 4.65428 4.76607 4.82255 4.87168 4.96608 5.12003 5.15033 5.27390 5.39850 5.43154 5.49359 5.66453 5.76332 5.77343 5.80296 5.83396 6.21354 6.28196 6.29023 6.34163 6.39810 6.52793 6.76732 7.36951 7.74548 7.96469 8.10696 8.39026 9.18507 9.90344 10.10068 11.38547 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.050904 B = 0.002584 C = 0.002548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 549.917790 B =10832.049025 C =10988.218572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.005 3.995 3 Si 0.889 3.111 4 H -0.283 1.283 5 H -0.291 1.291 6 H -0.277 1.277 7 C -0.248 4.248 8 H 0.090 0.910 9 N -0.750 5.750 10 C 0.131 3.869 11 C 0.085 3.915 12 H 0.104 0.896 13 O -0.557 6.557 14 C 0.091 3.909 15 N -0.724 5.724 16 C 0.511 3.489 17 O -0.534 6.534 18 C -0.104 4.104 19 C -0.065 4.065 20 C -0.106 4.106 21 C -0.120 4.120 22 C -0.122 4.122 23 C -0.120 4.120 24 C -0.106 4.106 25 H 0.260 0.740 26 H 0.366 0.634 27 H 0.032 0.968 28 H 0.037 0.963 29 H 0.376 0.624 30 H 0.072 0.928 31 H 0.079 0.921 32 H 0.404 0.596 33 H 0.103 0.897 34 H 0.103 0.897 35 H 0.120 0.880 36 H 0.121 0.879 37 H 0.120 0.880 38 H 0.121 0.879 39 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.308 -10.425 0.380 29.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.191 4.191 3 Si 0.719 3.281 4 H -0.210 1.210 5 H -0.218 1.218 6 H -0.203 1.203 7 C -0.378 4.378 8 H 0.107 0.893 9 N -0.396 5.396 10 C 0.002 3.998 11 C 0.026 3.974 12 H 0.122 0.878 13 O -0.362 6.362 14 C -0.034 4.034 15 N -0.376 5.376 16 C 0.297 3.703 17 O -0.410 6.410 18 C -0.144 4.144 19 C -0.065 4.065 20 C -0.124 4.124 21 C -0.138 4.138 22 C -0.140 4.140 23 C -0.138 4.138 24 C -0.124 4.124 25 H 0.070 0.930 26 H 0.200 0.800 27 H 0.050 0.950 28 H 0.055 0.945 29 H 0.224 0.776 30 H 0.090 0.910 31 H 0.097 0.903 32 H 0.239 0.761 33 H 0.122 0.878 34 H 0.121 0.879 35 H 0.138 0.862 36 H 0.139 0.861 37 H 0.138 0.862 38 H 0.139 0.861 39 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 26.951 -10.904 0.773 29.083 hybrid contribution 0.341 1.181 -0.335 1.274 sum 27.292 -9.724 0.438 28.975 Atomic orbital electron populations 1.69707 1.05137 1.25936 1.57272 1.24683 0.95261 0.97353 1.01798 0.86486 0.79086 0.84676 0.77870 1.21004 1.21794 1.20293 1.19043 0.80507 0.94785 1.43478 0.89261 1.42562 1.03943 1.02004 1.91078 1.21171 0.88551 0.90301 0.99760 1.22444 0.94686 0.90801 0.89517 0.87814 1.86535 1.86002 1.47757 1.15943 1.22071 0.79834 0.98303 1.03180 1.45948 1.06934 1.09713 1.75052 1.20520 0.88107 0.85200 0.76472 1.90742 1.80066 1.21435 1.48747 1.20688 0.91609 0.96733 1.05326 1.19282 0.97801 0.95724 0.93706 1.20994 0.98392 0.95539 0.97465 1.21105 0.98665 0.95850 0.98164 1.21145 1.00326 0.99840 0.92730 1.21106 0.99142 0.95429 0.98120 1.20992 0.97935 0.96140 0.97303 0.92996 0.80022 0.95021 0.94506 0.77602 0.90952 0.90314 0.76111 0.87846 0.87883 0.86227 0.86095 0.86214 0.86101 0.86237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.39 13.97 55.49 0.78 -28.61 16 2 C 0.01 0.15 5.50 -17.43 -0.10 0.05 16 3 Si 0.89 22.32 27.74 -169.99 -4.71 17.60 16 4 H -0.28 -7.09 7.11 56.52 0.40 -6.69 16 5 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 6 H -0.28 -6.58 6.52 56.52 0.37 -6.21 16 7 C -0.25 -7.05 10.47 -15.06 -0.16 -7.20 16 8 H 0.09 2.70 8.06 -52.48 -0.42 2.28 16 9 N -0.75 -17.63 5.30 -59.91 -0.32 -17.95 16 10 C 0.13 2.37 5.92 -4.04 -0.02 2.35 16 11 C 0.09 1.18 3.09 -26.73 -0.08 1.10 16 12 H 0.10 1.44 8.14 -51.93 -0.42 1.01 16 13 O -0.56 -7.80 13.03 -35.23 -0.46 -8.26 16 14 C 0.09 1.09 5.31 -4.04 -0.02 1.07 16 15 N -0.72 -7.48 5.50 -60.29 -0.33 -7.81 16 16 C 0.51 5.87 7.82 -10.99 -0.09 5.78 16 17 O -0.53 -8.45 16.03 5.55 0.09 -8.36 16 18 C -0.10 -0.83 5.83 -29.04 -0.17 -1.00 16 19 C -0.06 -0.63 4.37 -104.62 -0.46 -1.09 16 20 C -0.11 -1.01 9.70 -39.58 -0.38 -1.40 16 21 C -0.12 -1.06 10.05 -39.58 -0.40 -1.46 16 22 C -0.12 -1.04 10.05 -39.58 -0.40 -1.44 16 23 C -0.12 -1.06 10.05 -39.58 -0.40 -1.46 16 24 C -0.11 -1.01 9.70 -39.58 -0.38 -1.39 16 25 H 0.26 7.78 8.31 -40.82 -0.34 7.44 16 26 H 0.37 8.57 5.40 -40.82 -0.22 8.35 16 27 H 0.03 0.58 8.14 -51.93 -0.42 0.15 16 28 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 29 H 0.38 4.36 9.04 45.56 0.41 4.77 16 30 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.40 3.38 8.47 -40.82 -0.35 3.03 16 33 H 0.10 0.61 8.09 -51.93 -0.42 0.19 16 34 H 0.10 0.60 8.08 -51.93 -0.42 0.18 16 35 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 36 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 37 H 0.12 0.75 8.06 -52.49 -0.42 0.33 16 38 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 39 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 LS Contribution 336.62 15.07 5.07 5.07 Total: -1.00 -35.61 336.62 -7.75 -43.36 By element: Atomic # 1 Polarization: 15.87 SS G_CDS: -4.81 Total: 11.06 kcal Atomic # 6 Polarization: -3.04 SS G_CDS: -3.06 Total: -6.09 kcal Atomic # 7 Polarization: -54.51 SS G_CDS: 0.13 Total: -54.38 kcal Atomic # 8 Polarization: -16.25 SS G_CDS: -0.37 Total: -16.62 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -4.71 Total: 17.60 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -35.61 -7.75 -43.36 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699047558.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.973 kcal (2) G-P(sol) polarization free energy of solvation -35.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.360 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds