Wall clock time and date at job start Tue Mar 31 2020 00:02:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86806 * 119.99700 * 2 1 4 4 H 1.48498 * 109.47044 * 269.99479 * 3 2 1 5 5 H 1.48500 * 109.47460 * 29.99972 * 3 2 1 6 6 H 1.48509 * 109.47074 * 149.99609 * 3 2 1 7 7 C 1.38806 * 120.00306 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99875 * 0.02562 * 7 2 1 9 9 N 1.36937 * 120.00161 * 180.02562 * 7 2 1 10 10 C 1.46500 * 120.00028 * 180.02562 * 9 7 2 11 11 C 1.53003 * 109.47377 * 180.02562 * 10 9 7 12 12 H 1.08994 * 109.47229 * 59.99764 * 11 10 9 13 13 O 1.42904 * 109.46573 * 299.99904 * 11 10 9 14 14 C 1.52999 * 109.47015 * 180.02562 * 11 10 9 15 15 N 1.46506 * 109.46684 * 184.99978 * 14 11 10 16 16 C 1.34777 * 119.99873 * 180.02562 * 15 14 11 17 17 O 1.21284 * 119.99754 * 359.97438 * 16 15 14 18 18 C 1.50696 * 120.00137 * 179.97438 * 16 15 14 19 19 C 1.50699 * 109.47192 * 179.97438 * 18 16 15 20 20 C 1.38236 * 120.00094 * 269.72448 * 19 18 16 21 21 C 1.38231 * 120.00206 * 179.76822 * 20 19 18 22 22 C 1.38237 * 119.99761 * 0.50865 * 21 20 19 23 23 C 1.38236 * 120.00108 * 359.74568 * 22 21 20 24 24 C 1.38234 * 119.99928 * 359.97438 * 23 22 21 25 25 H 0.96997 * 119.99879 * 0.02562 * 1 2 3 26 26 H 0.96997 * 119.99989 * 0.02562 * 9 7 2 27 27 H 1.08999 * 109.47565 * 59.99942 * 10 9 7 28 28 H 1.09000 * 109.47293 * 300.00365 * 10 9 7 29 29 H 0.96695 * 113.99906 * 300.00024 * 13 11 10 30 30 H 1.09000 * 109.47486 * 64.99912 * 14 11 10 31 31 H 1.09001 * 109.47362 * 304.99190 * 14 11 10 32 32 H 0.96995 * 120.00050 * 359.72237 * 15 14 11 33 33 H 1.09004 * 109.47043 * 299.99732 * 18 16 15 34 34 H 1.09000 * 109.46978 * 59.99653 * 18 16 15 35 35 H 1.08002 * 119.99598 * 359.97438 * 20 19 18 36 36 H 1.07997 * 120.00204 * 180.23445 * 21 20 19 37 37 H 1.08000 * 120.00206 * 179.72980 * 22 21 20 38 38 H 1.07998 * 120.00494 * 179.97438 * 23 22 21 39 39 H 1.08002 * 120.00380 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6528 0.7000 6 1 3.5477 1.4403 0.7002 7 6 2.0103 -1.2021 0.0005 8 1 1.4703 -2.1374 0.0005 9 7 3.3796 -1.2020 0.0011 10 6 4.1122 -2.4707 0.0011 11 6 5.6165 -2.1912 0.0024 12 1 5.8791 -1.6200 0.8927 13 8 5.9625 -1.4413 -1.1639 14 6 6.3814 -3.5162 0.0017 15 7 7.8171 -3.2512 0.1233 16 6 8.6922 -4.2760 0.1440 17 8 8.2910 -5.4177 0.0623 18 6 10.1691 -4.0034 0.2685 19 6 10.9226 -5.3085 0.2680 20 6 11.1824 -5.9571 1.4608 21 6 11.8693 -7.1567 1.4599 22 6 12.3057 -7.7023 0.2671 23 6 12.0505 -7.0511 -0.9252 24 6 11.3585 -5.8545 -0.9248 25 1 -0.4850 0.8400 -0.0004 26 1 3.8646 -0.3620 0.0014 27 1 3.8493 -3.0422 -0.8891 28 1 3.8485 -3.0426 0.8908 29 1 5.7563 -1.8898 -1.9953 30 1 6.1876 -4.0472 -0.9302 31 1 6.0521 -4.1263 0.8428 32 1 8.1383 -2.3380 0.1846 33 1 10.4981 -3.3932 -0.5727 34 1 10.3632 -3.4725 1.2004 35 1 10.8456 -5.5283 2.3930 36 1 12.0690 -7.6653 2.3915 37 1 12.8463 -8.6373 0.2668 38 1 12.3918 -7.4772 -1.8571 39 1 11.1595 -5.3454 -1.8563 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699047558.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:02:40 Heat of formation + Delta-G solvation = -82.086006 kcal Electronic energy + Delta-G solvation = -20393.118683 eV Core-core repulsion = 17106.514914 eV Total energy + Delta-G solvation = -3286.603769 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.07136 -39.77467 -38.88807 -36.19540 -35.27185 -33.82819 -33.47475 -31.74703 -31.04489 -28.77342 -26.79500 -24.11623 -23.45808 -22.86614 -22.58205 -21.21383 -19.80118 -18.39496 -17.75915 -17.47919 -17.25055 -16.56031 -16.45356 -16.33808 -15.77107 -15.50942 -15.41428 -15.06806 -14.62635 -14.30640 -14.23171 -14.02824 -13.90027 -13.41775 -13.35082 -13.24527 -12.84098 -12.79414 -12.23985 -11.99370 -11.89047 -11.84825 -11.83856 -11.21617 -11.03152 -10.85683 -10.12004 -9.78098 -9.61052 -9.33092 -8.04476 -5.38621 0.43623 0.54082 1.39420 1.42789 1.50200 1.65634 2.16427 2.48050 2.94565 3.26071 3.35853 3.54083 3.70924 3.95795 3.97757 4.02164 4.10950 4.17849 4.25507 4.29892 4.40907 4.59620 4.61356 4.67104 4.74350 4.80201 4.91151 5.14486 5.17292 5.18328 5.39528 5.58136 5.64591 5.68574 5.72517 6.14960 6.18955 6.56259 6.75089 7.06601 7.27051 7.81545 8.01424 9.16793 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.050904 B = 0.002584 C = 0.002548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 549.917790 B =10832.049025 C =10988.218572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.983 5.983 2 C -0.065 4.065 3 Si 0.962 3.038 4 H -0.279 1.279 5 H -0.296 1.296 6 H -0.251 1.251 7 C -0.239 4.239 8 H 0.056 0.944 9 N -0.752 5.752 10 C 0.123 3.877 11 C 0.107 3.893 12 H 0.112 0.888 13 O -0.562 6.562 14 C 0.101 3.899 15 N -0.713 5.713 16 C 0.511 3.489 17 O -0.582 6.582 18 C -0.096 4.096 19 C -0.082 4.082 20 C -0.124 4.124 21 C -0.132 4.132 22 C -0.132 4.132 23 C -0.132 4.132 24 C -0.123 4.123 25 H 0.259 0.741 26 H 0.370 0.630 27 H 0.033 0.967 28 H 0.036 0.964 29 H 0.388 0.612 30 H 0.069 0.931 31 H 0.072 0.928 32 H 0.417 0.583 33 H 0.128 0.872 34 H 0.128 0.872 35 H 0.129 0.871 36 H 0.138 0.862 37 H 0.139 0.861 38 H 0.138 0.862 39 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 30.091 -9.554 0.419 31.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.634 5.634 2 C -0.257 4.257 3 Si 0.788 3.212 4 H -0.205 1.205 5 H -0.223 1.223 6 H -0.176 1.176 7 C -0.370 4.370 8 H 0.074 0.926 9 N -0.398 5.398 10 C -0.005 4.005 11 C 0.047 3.953 12 H 0.129 0.871 13 O -0.369 6.369 14 C -0.024 4.024 15 N -0.365 5.365 16 C 0.299 3.701 17 O -0.462 6.462 18 C -0.135 4.135 19 C -0.082 4.082 20 C -0.142 4.142 21 C -0.150 4.150 22 C -0.150 4.150 23 C -0.150 4.150 24 C -0.141 4.141 25 H 0.067 0.933 26 H 0.204 0.796 27 H 0.051 0.949 28 H 0.054 0.946 29 H 0.237 0.763 30 H 0.087 0.913 31 H 0.090 0.910 32 H 0.254 0.746 33 H 0.146 0.854 34 H 0.146 0.854 35 H 0.147 0.853 36 H 0.156 0.844 37 H 0.157 0.843 38 H 0.156 0.844 39 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 29.796 -10.034 0.808 31.450 hybrid contribution -0.535 0.763 -0.366 1.001 sum 29.261 -9.271 0.442 30.698 Atomic orbital electron populations 1.69891 1.07204 1.26823 1.59450 1.25558 0.96170 1.01505 1.02431 0.85316 0.78484 0.79233 0.78117 1.20477 1.22260 1.17597 1.19036 0.82746 0.93489 1.41710 0.92646 1.42531 1.02299 1.04076 1.90937 1.21401 0.91301 0.88142 0.99610 1.22131 0.91508 0.91640 0.89978 0.87073 1.86515 1.85758 1.48167 1.16485 1.21803 0.80850 0.96983 1.02808 1.45819 1.05969 1.10380 1.74369 1.21111 0.89467 0.84405 0.75118 1.90726 1.81022 1.23393 1.51063 1.20729 0.88538 0.96551 1.07688 1.19558 0.98168 0.96648 0.93855 1.21271 0.98815 0.96072 0.98007 1.21425 0.98486 0.95917 0.99152 1.21471 1.00301 1.00611 0.92614 1.21426 0.99006 0.95433 0.99103 1.21269 0.98342 0.96709 0.97815 0.93254 0.79622 0.94862 0.94588 0.76313 0.91294 0.91004 0.74562 0.85385 0.85364 0.85314 0.84449 0.84267 0.84433 0.85326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -63.26 13.97 21.65 0.30 -62.96 16 2 C -0.07 -3.85 5.50 84.86 0.47 -3.38 16 3 Si 0.96 45.61 27.74 68.60 1.90 47.51 16 4 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 5 H -0.30 -14.17 7.11 99.48 0.71 -13.46 16 6 H -0.25 -10.75 6.52 99.48 0.65 -10.10 16 7 C -0.24 -13.64 10.47 84.03 0.88 -12.76 16 8 H 0.06 3.47 8.06 -2.91 -0.02 3.45 16 9 N -0.75 -34.38 5.30 -343.45 -1.82 -36.20 16 10 C 0.12 4.30 5.92 86.38 0.51 4.81 16 11 C 0.11 2.70 3.09 30.60 0.09 2.79 16 12 H 0.11 2.71 8.14 -2.39 -0.02 2.69 16 13 O -0.56 -14.03 13.03 -148.98 -1.94 -15.97 16 14 C 0.10 2.24 5.31 86.38 0.46 2.70 16 15 N -0.71 -12.91 5.50 -463.05 -2.55 -15.45 16 16 C 0.51 10.75 7.82 87.66 0.69 11.44 16 17 O -0.58 -18.01 16.03 -3.04 -0.05 -18.06 16 18 C -0.10 -1.29 5.83 29.10 0.17 -1.12 16 19 C -0.08 -1.49 4.37 -19.87 -0.09 -1.57 16 20 C -0.12 -2.23 9.70 22.27 0.22 -2.01 16 21 C -0.13 -2.19 10.05 22.27 0.22 -1.97 16 22 C -0.13 -2.10 10.05 22.27 0.22 -1.87 16 23 C -0.13 -2.18 10.05 22.27 0.22 -1.96 16 24 C -0.12 -2.22 9.70 22.27 0.22 -2.00 16 25 H 0.26 15.80 8.31 -92.71 -0.77 15.03 16 26 H 0.37 16.32 5.40 -92.71 -0.50 15.82 16 27 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 28 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 29 H 0.39 7.91 9.04 -74.06 -0.67 7.24 16 30 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 31 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 32 H 0.42 5.52 8.47 -92.71 -0.79 4.73 16 33 H 0.13 1.09 8.09 -2.38 -0.02 1.07 16 34 H 0.13 1.07 8.08 -2.39 -0.02 1.05 16 35 H 0.13 1.93 8.06 -2.91 -0.02 1.90 16 36 H 0.14 1.67 8.06 -2.91 -0.02 1.65 16 37 H 0.14 1.53 8.06 -2.91 -0.02 1.50 16 38 H 0.14 1.66 8.06 -2.91 -0.02 1.64 16 39 H 0.13 1.92 8.06 -2.91 -0.02 1.90 16 Total: -1.00 -77.58 336.62 -0.81 -78.39 By element: Atomic # 1 Polarization: 30.58 SS G_CDS: -0.94 Total: 29.63 kcal Atomic # 6 Polarization: -11.18 SS G_CDS: 4.28 Total: -6.90 kcal Atomic # 7 Polarization: -110.54 SS G_CDS: -4.07 Total: -114.61 kcal Atomic # 8 Polarization: -32.04 SS G_CDS: -1.99 Total: -34.03 kcal Atomic # 14 Polarization: 45.61 SS G_CDS: 1.90 Total: 47.51 kcal Total: -77.58 -0.81 -78.39 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699047558.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.695 kcal (2) G-P(sol) polarization free energy of solvation -77.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.391 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds