Wall clock time and date at job start Tue Mar 31 2020 00:05:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86800 * 119.99911 * 2 1 4 4 H 1.48493 * 109.47470 * 240.00041 * 3 2 1 5 5 H 1.48499 * 109.47263 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47057 * 119.99835 * 3 2 1 7 7 C 1.38806 * 119.99833 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99681 * 180.02562 * 7 2 1 9 9 N 1.36931 * 120.00545 * 359.97438 * 7 2 1 10 10 C 1.46500 * 120.00396 * 180.02562 * 9 7 2 11 11 C 1.53006 * 109.46998 * 180.02562 * 10 9 7 12 12 H 1.09001 * 109.46801 * 60.00058 * 11 10 9 13 13 O 1.42895 * 109.47036 * 299.99689 * 11 10 9 14 14 C 1.52999 * 109.46623 * 179.97438 * 11 10 9 15 15 N 1.46504 * 109.46822 * 184.99666 * 14 11 10 16 16 C 1.34773 * 119.99935 * 179.97438 * 15 14 11 17 17 O 1.21281 * 120.00498 * 0.02562 * 16 15 14 18 18 C 1.50706 * 120.00130 * 179.97438 * 16 15 14 19 19 C 1.50283 * 109.46885 * 300.01867 * 18 16 15 20 20 C 1.32266 * 121.59585 * 303.37011 * 19 18 16 21 21 C 1.45197 * 123.03521 * 0.92953 * 20 19 18 22 22 C 1.32939 * 125.20498 * 319.61721 * 21 20 19 23 23 C 1.45205 * 125.19467 * 359.97438 * 22 21 20 24 24 C 1.32289 * 123.02394 * 40.43765 * 23 22 21 25 25 H 0.97001 * 119.99731 * 359.97438 * 1 2 3 26 26 H 0.97010 * 119.99695 * 0.02562 * 9 7 2 27 27 H 1.08993 * 109.47452 * 60.00465 * 10 9 7 28 28 H 1.09000 * 109.47175 * 300.00255 * 10 9 7 29 29 H 0.96695 * 114.00385 * 300.00682 * 13 11 10 30 30 H 1.08994 * 109.47465 * 305.00017 * 14 11 10 31 31 H 1.08998 * 109.47565 * 65.00449 * 14 11 10 32 32 H 0.96995 * 120.00028 * 0.02562 * 15 14 11 33 33 H 1.09006 * 109.46132 * 60.00609 * 18 16 15 34 34 H 1.08004 * 119.20631 * 123.31227 * 19 18 16 35 35 H 1.08001 * 118.47277 * 180.94321 * 20 19 18 36 36 H 1.08001 * 117.39618 * 139.59421 * 21 20 19 37 37 H 1.08006 * 117.40245 * 179.97438 * 22 21 20 38 38 H 1.08000 * 118.48599 * 220.41381 * 23 22 21 39 39 H 1.08003 * 119.20310 * 179.00149 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6965 -1.2124 5 1 1.2852 2.7465 0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0001 9 7 1.3256 -2.3880 -0.0005 10 6 2.0581 -3.6567 -0.0005 11 6 1.0638 -4.8197 -0.0012 12 1 0.4375 -4.7617 -0.8914 13 8 0.2419 -4.7443 1.1653 14 6 1.8289 -6.1447 -0.0018 15 7 0.8814 -7.2555 -0.1228 16 6 1.3316 -8.5257 -0.1454 17 8 2.5209 -8.7491 -0.0651 18 6 0.3569 -9.6685 -0.2692 19 6 -0.5967 -9.6415 0.8920 20 6 -0.1672 -9.6774 2.1425 21 6 1.2405 -9.7251 2.4948 22 6 2.1642 -10.4445 1.8651 23 6 1.9193 -11.3032 0.7200 24 6 1.1086 -10.9699 -0.2708 25 1 -0.4850 0.8401 0.0004 26 1 0.3555 -2.3880 -0.0005 27 1 2.6847 -3.7146 0.8894 28 1 2.6848 -3.7145 -0.8905 29 1 0.7337 -4.7897 1.9966 30 1 2.5211 -6.1642 -0.8436 31 1 2.3866 -6.2427 0.9295 32 1 -0.0697 -7.0768 -0.1873 33 1 -0.2015 -9.5703 -1.2002 34 1 -1.6585 -9.5906 0.7009 35 1 -0.8975 -9.6711 2.9381 36 1 1.5630 -9.1283 3.3352 37 1 3.1774 -10.3857 2.2346 38 1 2.4224 -12.2578 0.6751 39 1 0.9841 -11.6493 -1.1010 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699049982.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:05:42 Heat of formation + Delta-G solvation = -22.437488 kcal Electronic energy + Delta-G solvation = -21231.124606 eV Core-core repulsion = 17947.107391 eV Total energy + Delta-G solvation = -3284.017215 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.50905 -38.04775 -36.98396 -34.40483 -33.98591 -32.53047 -32.44357 -31.25170 -29.10555 -26.76795 -25.07995 -23.73645 -22.67594 -21.40307 -20.93782 -18.86319 -17.72517 -17.37245 -17.16305 -16.86524 -16.09578 -15.88915 -15.12897 -14.75986 -14.47518 -14.43213 -13.99773 -13.58634 -13.54190 -12.96940 -12.70453 -12.63476 -12.42723 -12.20195 -12.11437 -11.81454 -11.09308 -10.95773 -10.80723 -10.60554 -10.38364 -10.20428 -10.04247 -9.80306 -9.51235 -9.39742 -9.02892 -8.89884 -8.34174 -6.94133 -5.76241 -3.05969 1.09592 1.83976 2.63837 3.04861 3.28938 3.44062 3.48318 3.49529 4.53034 4.54650 4.61545 4.71727 4.77085 4.87550 4.93018 4.95528 5.04884 5.26892 5.28317 5.46035 5.55732 5.63435 5.74035 5.79481 5.83954 5.97593 6.20822 6.27986 6.35674 6.47105 6.51794 6.58220 6.61509 6.68435 6.69950 7.55389 7.67703 7.96119 8.27981 8.42062 9.53575 10.10348 10.46393 11.46039 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.041207 B = 0.003085 C = 0.003037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 679.340650 B = 9073.779631 C = 9217.917981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.012 4.012 3 Si 0.908 3.092 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.245 4.245 8 H 0.069 0.931 9 N -0.725 5.725 10 C 0.127 3.873 11 C 0.090 3.910 12 H 0.103 0.897 13 O -0.551 6.551 14 C 0.092 3.908 15 N -0.718 5.718 16 C 0.521 3.479 17 O -0.534 6.534 18 C -0.048 4.048 19 C -0.148 4.148 20 C -0.105 4.105 21 C -0.147 4.147 22 C -0.075 4.075 23 C -0.103 4.103 24 C -0.128 4.128 25 H 0.256 0.744 26 H 0.389 0.611 27 H 0.022 0.978 28 H 0.028 0.972 29 H 0.373 0.627 30 H 0.075 0.925 31 H 0.068 0.932 32 H 0.404 0.596 33 H 0.106 0.894 34 H 0.123 0.877 35 H 0.119 0.881 36 H 0.111 0.889 37 H 0.112 0.888 38 H 0.116 0.884 39 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.917 -23.720 1.783 23.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.208 4.208 3 Si 0.739 3.261 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.212 1.212 7 C -0.376 4.376 8 H 0.087 0.913 9 N -0.370 5.370 10 C -0.002 4.002 11 C 0.030 3.970 12 H 0.121 0.879 13 O -0.356 6.356 14 C -0.032 4.032 15 N -0.369 5.369 16 C 0.307 3.693 17 O -0.410 6.410 18 C -0.070 4.070 19 C -0.166 4.166 20 C -0.123 4.123 21 C -0.165 4.165 22 C -0.093 4.093 23 C -0.121 4.121 24 C -0.146 4.146 25 H 0.066 0.934 26 H 0.224 0.776 27 H 0.040 0.960 28 H 0.046 0.954 29 H 0.220 0.780 30 H 0.093 0.907 31 H 0.087 0.913 32 H 0.238 0.762 33 H 0.124 0.876 34 H 0.141 0.859 35 H 0.136 0.864 36 H 0.129 0.871 37 H 0.130 0.870 38 H 0.134 0.866 39 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -0.392 -23.682 1.396 23.727 hybrid contribution 0.235 1.024 0.363 1.111 sum -0.157 -22.658 1.759 22.727 Atomic orbital electron populations 1.69671 1.05105 1.25791 1.57273 1.24758 0.95532 0.97713 1.02822 0.86253 0.78509 0.83455 0.77859 1.21235 1.21638 1.21248 1.19178 0.90972 0.84141 1.43298 0.91285 1.42224 1.06116 0.99349 1.89356 1.21194 0.93544 0.86667 0.98805 1.22371 0.93210 0.91802 0.89625 0.87904 1.86570 1.36951 1.96416 1.15661 1.22057 0.92380 0.86055 1.02719 1.45860 1.11057 1.05347 1.74677 1.20387 0.89345 0.83643 0.75976 1.90688 1.16838 1.84358 1.49142 1.19224 0.95363 0.92693 0.99677 1.22895 0.98999 1.02410 0.92319 1.21123 0.95302 0.99106 0.96727 1.21028 0.92853 1.00484 1.02127 1.21037 0.98562 0.95094 0.94653 1.21013 0.97838 0.98781 0.94495 1.22690 0.96360 0.96716 0.98865 0.93422 0.77640 0.96015 0.95444 0.78019 0.90666 0.91323 0.76175 0.87579 0.85906 0.86356 0.87065 0.87017 0.86600 0.86311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.43 13.06 55.49 0.72 -27.70 16 2 C -0.01 -0.35 5.50 -17.43 -0.10 -0.44 16 3 Si 0.91 22.51 29.55 -169.99 -5.02 17.49 16 4 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 5 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 6 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 7 C -0.24 -6.92 9.99 -15.06 -0.15 -7.07 16 8 H 0.07 1.88 7.83 -52.48 -0.41 1.47 16 9 N -0.73 -18.46 5.49 -59.91 -0.33 -18.79 16 10 C 0.13 2.47 5.92 -4.04 -0.02 2.45 16 11 C 0.09 1.39 3.09 -26.73 -0.08 1.30 16 12 H 0.10 1.63 8.14 -51.93 -0.42 1.21 16 13 O -0.55 -8.80 13.03 -35.23 -0.46 -9.26 16 14 C 0.09 1.23 5.31 -4.04 -0.02 1.21 16 15 N -0.72 -8.55 5.40 -60.29 -0.33 -8.87 16 16 C 0.52 6.57 5.49 -10.98 -0.06 6.51 16 17 O -0.53 -8.43 13.67 5.56 0.08 -8.35 16 18 C -0.05 -0.46 2.89 -94.47 -0.27 -0.74 16 19 C -0.15 -1.29 8.89 -36.44 -0.32 -1.61 16 20 C -0.10 -0.99 9.58 -38.75 -0.37 -1.36 16 21 C -0.15 -1.58 8.53 -38.65 -0.33 -1.91 16 22 C -0.08 -0.84 7.35 -38.65 -0.28 -1.12 16 23 C -0.10 -1.06 9.09 -38.74 -0.35 -1.41 16 24 C -0.13 -1.23 8.78 -36.43 -0.32 -1.55 16 25 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 26 H 0.39 10.58 7.54 -40.82 -0.31 10.27 16 27 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 28 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.37 5.07 9.05 45.56 0.41 5.48 16 30 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 31 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.40 4.27 8.36 -40.82 -0.34 3.93 16 33 H 0.11 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.12 0.81 8.06 -52.48 -0.42 0.38 16 35 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 36 H 0.11 1.14 8.06 -52.49 -0.42 0.71 16 37 H 0.11 1.20 8.06 -52.48 -0.42 0.78 16 38 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 39 H 0.12 0.88 8.06 -52.48 -0.42 0.46 16 LS Contribution 330.21 15.07 4.98 4.98 Total: -1.00 -33.70 330.21 -7.91 -41.60 By element: Atomic # 1 Polarization: 19.51 SS G_CDS: -4.86 Total: 14.65 kcal Atomic # 6 Polarization: -3.05 SS G_CDS: -2.69 Total: -5.74 kcal Atomic # 7 Polarization: -55.43 SS G_CDS: 0.07 Total: -55.36 kcal Atomic # 8 Polarization: -17.23 SS G_CDS: -0.38 Total: -17.62 kcal Atomic # 14 Polarization: 22.51 SS G_CDS: -5.02 Total: 17.49 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -33.70 -7.91 -41.60 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699049982.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.167 kcal (2) G-P(sol) polarization free energy of solvation -33.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.604 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds