Wall clock time and date at job start Tue Mar 31 2020 00:05:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86800 * 119.99911 * 2 1 4 4 H 1.48493 * 109.47470 * 240.00041 * 3 2 1 5 5 H 1.48499 * 109.47263 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47057 * 119.99835 * 3 2 1 7 7 C 1.38806 * 119.99833 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99681 * 180.02562 * 7 2 1 9 9 N 1.36931 * 120.00545 * 359.97438 * 7 2 1 10 10 C 1.46500 * 120.00396 * 180.02562 * 9 7 2 11 11 C 1.53006 * 109.46998 * 180.02562 * 10 9 7 12 12 H 1.09001 * 109.46801 * 60.00058 * 11 10 9 13 13 O 1.42895 * 109.47036 * 299.99689 * 11 10 9 14 14 C 1.52999 * 109.46623 * 179.97438 * 11 10 9 15 15 N 1.46504 * 109.46822 * 184.99666 * 14 11 10 16 16 C 1.34773 * 119.99935 * 179.97438 * 15 14 11 17 17 O 1.21281 * 120.00498 * 0.02562 * 16 15 14 18 18 C 1.50706 * 120.00130 * 179.97438 * 16 15 14 19 19 C 1.50283 * 109.46885 * 300.01867 * 18 16 15 20 20 C 1.32266 * 121.59585 * 303.37011 * 19 18 16 21 21 C 1.45197 * 123.03521 * 0.92953 * 20 19 18 22 22 C 1.32939 * 125.20498 * 319.61721 * 21 20 19 23 23 C 1.45205 * 125.19467 * 359.97438 * 22 21 20 24 24 C 1.32289 * 123.02394 * 40.43765 * 23 22 21 25 25 H 0.97001 * 119.99731 * 359.97438 * 1 2 3 26 26 H 0.97010 * 119.99695 * 0.02562 * 9 7 2 27 27 H 1.08993 * 109.47452 * 60.00465 * 10 9 7 28 28 H 1.09000 * 109.47175 * 300.00255 * 10 9 7 29 29 H 0.96695 * 114.00385 * 300.00682 * 13 11 10 30 30 H 1.08994 * 109.47465 * 305.00017 * 14 11 10 31 31 H 1.08998 * 109.47565 * 65.00449 * 14 11 10 32 32 H 0.96995 * 120.00028 * 0.02562 * 15 14 11 33 33 H 1.09006 * 109.46132 * 60.00609 * 18 16 15 34 34 H 1.08004 * 119.20631 * 123.31227 * 19 18 16 35 35 H 1.08001 * 118.47277 * 180.94321 * 20 19 18 36 36 H 1.08001 * 117.39618 * 139.59421 * 21 20 19 37 37 H 1.08006 * 117.40245 * 179.97438 * 22 21 20 38 38 H 1.08000 * 118.48599 * 220.41381 * 23 22 21 39 39 H 1.08003 * 119.20310 * 179.00149 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6965 -1.2124 5 1 1.2852 2.7465 0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0001 9 7 1.3256 -2.3880 -0.0005 10 6 2.0581 -3.6567 -0.0005 11 6 1.0638 -4.8197 -0.0012 12 1 0.4375 -4.7617 -0.8914 13 8 0.2419 -4.7443 1.1653 14 6 1.8289 -6.1447 -0.0018 15 7 0.8814 -7.2555 -0.1228 16 6 1.3316 -8.5257 -0.1454 17 8 2.5209 -8.7491 -0.0651 18 6 0.3569 -9.6685 -0.2692 19 6 -0.5967 -9.6415 0.8920 20 6 -0.1672 -9.6774 2.1425 21 6 1.2405 -9.7251 2.4948 22 6 2.1642 -10.4445 1.8651 23 6 1.9193 -11.3032 0.7200 24 6 1.1086 -10.9699 -0.2708 25 1 -0.4850 0.8401 0.0004 26 1 0.3555 -2.3880 -0.0005 27 1 2.6847 -3.7146 0.8894 28 1 2.6848 -3.7145 -0.8905 29 1 0.7337 -4.7897 1.9966 30 1 2.5211 -6.1642 -0.8436 31 1 2.3866 -6.2427 0.9295 32 1 -0.0697 -7.0768 -0.1873 33 1 -0.2015 -9.5703 -1.2002 34 1 -1.6585 -9.5906 0.7009 35 1 -0.8975 -9.6711 2.9381 36 1 1.5630 -9.1283 3.3352 37 1 3.1774 -10.3857 2.2346 38 1 2.4224 -12.2578 0.6751 39 1 0.9841 -11.6493 -1.1010 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699049982.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:05:41 Heat of formation + Delta-G solvation = -48.107354 kcal Electronic energy + Delta-G solvation = -21232.237735 eV Core-core repulsion = 17947.107391 eV Total energy + Delta-G solvation = -3285.130344 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.42244 -39.23706 -37.99453 -36.06095 -35.30150 -33.39511 -33.18611 -33.07438 -30.55667 -27.83319 -26.55825 -24.52290 -24.35018 -22.75384 -21.97910 -19.78188 -19.17946 -18.50510 -18.11712 -17.92464 -17.22047 -17.11871 -16.45719 -16.22470 -15.74754 -15.48838 -15.11017 -14.94173 -14.82354 -14.38135 -14.09185 -13.82897 -13.39896 -13.26491 -13.05811 -12.93867 -12.85830 -12.72276 -12.20684 -11.97780 -11.81816 -11.80287 -11.17633 -11.11091 -10.97524 -10.77150 -10.17932 -10.03711 -9.12229 -9.01876 -7.95234 -5.24973 0.35405 1.10560 1.47395 1.50465 1.56724 1.70408 2.21391 2.36110 2.56806 3.35715 3.47254 3.62520 3.79793 3.89596 4.02877 4.04206 4.13521 4.21385 4.22821 4.33146 4.43536 4.56265 4.62237 4.73310 4.80734 4.92047 5.02401 5.06583 5.21052 5.44510 5.47942 5.56600 5.68239 5.84403 5.87940 5.94458 6.25782 6.61017 6.78715 7.32214 7.33083 8.08198 8.31986 9.27719 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.041207 B = 0.003085 C = 0.003037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 679.340650 B = 9073.779631 C = 9217.917981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.967 5.967 2 C -0.074 4.074 3 Si 0.975 3.025 4 H -0.277 1.277 5 H -0.294 1.294 6 H -0.278 1.278 7 C -0.252 4.252 8 H 0.075 0.925 9 N -0.739 5.739 10 C 0.122 3.878 11 C 0.110 3.890 12 H 0.102 0.898 13 O -0.561 6.561 14 C 0.107 3.893 15 N -0.711 5.711 16 C 0.518 3.482 17 O -0.569 6.569 18 C -0.050 4.050 19 C -0.139 4.139 20 C -0.121 4.121 21 C -0.155 4.155 22 C -0.091 4.091 23 C -0.121 4.121 24 C -0.131 4.131 25 H 0.252 0.748 26 H 0.377 0.623 27 H 0.028 0.972 28 H 0.032 0.968 29 H 0.383 0.617 30 H 0.072 0.928 31 H 0.065 0.935 32 H 0.412 0.588 33 H 0.134 0.866 34 H 0.151 0.849 35 H 0.134 0.866 36 H 0.107 0.893 37 H 0.103 0.897 38 H 0.130 0.870 39 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.224 -24.554 1.300 24.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.617 5.617 2 C -0.266 4.266 3 Si 0.804 3.196 4 H -0.203 1.203 5 H -0.221 1.221 6 H -0.204 1.204 7 C -0.384 4.384 8 H 0.093 0.907 9 N -0.382 5.382 10 C -0.005 4.005 11 C 0.050 3.950 12 H 0.120 0.880 13 O -0.367 6.367 14 C -0.019 4.019 15 N -0.363 5.363 16 C 0.305 3.695 17 O -0.448 6.448 18 C -0.071 4.071 19 C -0.157 4.157 20 C -0.139 4.139 21 C -0.173 4.173 22 C -0.109 4.109 23 C -0.139 4.139 24 C -0.149 4.149 25 H 0.061 0.939 26 H 0.210 0.790 27 H 0.046 0.954 28 H 0.050 0.950 29 H 0.232 0.768 30 H 0.090 0.910 31 H 0.083 0.917 32 H 0.249 0.751 33 H 0.152 0.848 34 H 0.168 0.832 35 H 0.151 0.849 36 H 0.125 0.875 37 H 0.121 0.879 38 H 0.148 0.852 39 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -0.680 -24.551 0.920 24.578 hybrid contribution 0.379 1.220 0.528 1.382 sum -0.301 -23.331 1.448 23.378 Atomic orbital electron populations 1.69829 1.06633 1.26215 1.59064 1.25596 0.96410 1.01177 1.03455 0.85195 0.77196 0.79032 0.78217 1.20322 1.22052 1.20377 1.19609 0.91500 0.85410 1.41851 0.90689 1.42394 1.05783 1.00673 1.89376 1.21396 0.94292 0.85914 0.98937 1.22075 0.92161 0.91199 0.89571 0.88041 1.86549 1.37466 1.96396 1.16301 1.21753 0.92173 0.85488 1.02440 1.45776 1.11232 1.04921 1.74364 1.20968 0.89436 0.84179 0.74894 1.90678 1.18567 1.84851 1.50712 1.19367 0.95014 0.91272 1.01459 1.23133 1.00115 1.00993 0.91493 1.21300 0.94767 1.00054 0.97795 1.21179 0.93841 1.00305 1.02008 1.21150 0.98396 0.95858 0.95516 1.21229 0.98730 0.99419 0.94522 1.23012 0.95763 0.96972 0.99174 0.93932 0.79009 0.95428 0.95019 0.76832 0.90992 0.91659 0.75148 0.84785 0.83155 0.84878 0.87521 0.87892 0.85188 0.83942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.60 13.06 21.65 0.28 -59.32 16 2 C -0.07 -4.27 5.50 84.86 0.47 -3.80 16 3 Si 0.98 46.18 29.55 68.60 2.03 48.20 16 4 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 5 H -0.29 -14.00 7.11 99.48 0.71 -13.30 16 6 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 7 C -0.25 -14.15 9.99 84.03 0.84 -13.31 16 8 H 0.08 4.03 7.83 -2.91 -0.02 4.00 16 9 N -0.74 -37.48 5.49 -343.46 -1.89 -39.37 16 10 C 0.12 4.67 5.92 86.38 0.51 5.18 16 11 C 0.11 3.27 3.09 30.60 0.09 3.36 16 12 H 0.10 3.09 8.14 -2.39 -0.02 3.07 16 13 O -0.56 -17.27 13.03 -148.98 -1.94 -19.21 16 14 C 0.11 2.72 5.31 86.38 0.46 3.18 16 15 N -0.71 -15.69 5.40 -463.06 -2.50 -18.19 16 16 C 0.52 12.24 5.49 87.66 0.48 12.72 16 17 O -0.57 -17.59 13.67 -3.03 -0.04 -17.63 16 18 C -0.05 -0.83 2.89 -13.29 -0.04 -0.87 16 19 C -0.14 -2.04 8.89 24.50 0.22 -1.82 16 20 C -0.12 -2.09 9.58 23.01 0.22 -1.87 16 21 C -0.16 -3.28 8.53 22.89 0.20 -3.09 16 22 C -0.09 -2.03 7.35 22.89 0.17 -1.86 16 23 C -0.12 -2.36 9.09 23.00 0.21 -2.15 16 24 C -0.13 -2.25 8.78 24.49 0.21 -2.03 16 25 H 0.25 15.04 8.31 -92.71 -0.77 14.27 16 26 H 0.38 20.66 7.54 -92.70 -0.70 19.96 16 27 H 0.03 1.04 8.14 -2.39 -0.02 1.02 16 28 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 29 H 0.38 9.99 9.05 -74.06 -0.67 9.32 16 30 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 31 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 32 H 0.41 7.77 8.36 -92.71 -0.77 7.00 16 33 H 0.13 1.49 8.14 -2.38 -0.02 1.47 16 34 H 0.15 1.37 8.06 -2.91 -0.02 1.35 16 35 H 0.13 1.84 8.06 -2.91 -0.02 1.82 16 36 H 0.11 2.23 8.06 -2.91 -0.02 2.20 16 37 H 0.10 2.34 8.06 -2.91 -0.02 2.31 16 38 H 0.13 2.01 8.06 -2.91 -0.02 1.99 16 39 H 0.14 1.69 8.06 -2.91 -0.02 1.67 16 Total: -1.00 -71.69 330.21 -1.10 -72.78 By element: Atomic # 1 Polarization: 40.17 SS G_CDS: -1.07 Total: 39.09 kcal Atomic # 6 Polarization: -10.40 SS G_CDS: 4.04 Total: -6.36 kcal Atomic # 7 Polarization: -112.77 SS G_CDS: -4.11 Total: -116.88 kcal Atomic # 8 Polarization: -34.85 SS G_CDS: -1.98 Total: -36.84 kcal Atomic # 14 Polarization: 46.18 SS G_CDS: 2.03 Total: 48.20 kcal Total: -71.69 -1.10 -72.78 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699049982.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.676 kcal (2) G-P(sol) polarization free energy of solvation -71.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.783 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds