Wall clock time and date at job start Tue Mar 31 2020 00:18:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86798 * 120.00324 * 2 1 4 4 H 1.48492 * 109.47218 * 239.99783 * 3 2 1 5 5 H 1.48506 * 109.46910 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47162 * 119.99789 * 3 2 1 7 7 C 1.38818 * 119.99562 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99706 * 180.02562 * 7 2 1 9 9 N 1.36934 * 120.00221 * 0.02562 * 7 2 1 10 10 C 1.46500 * 119.99695 * 180.02562 * 9 7 2 11 11 C 1.53006 * 109.46793 * 184.93438 * 10 9 7 12 12 H 1.09001 * 109.87427 * 54.33274 * 11 10 9 13 13 C 1.54327 * 110.00834 * 293.23653 * 11 10 9 14 14 C 1.55280 * 103.00528 * 218.39682 * 13 11 10 15 15 C 1.54912 * 101.52835 * 35.35893 * 14 13 11 16 16 N 1.47024 * 109.87937 * 175.35157 * 11 10 9 17 17 C 1.34774 * 125.64925 * 298.48216 * 16 11 10 18 18 O 1.21288 * 120.00154 * 354.95540 * 17 16 11 19 19 C 1.50701 * 120.00217 * 174.94439 * 17 16 11 20 20 C 1.50695 * 109.47176 * 180.02562 * 19 17 16 21 21 C 1.34511 * 125.79091 * 89.72253 * 20 19 17 22 22 C 1.41381 * 106.84447 * 179.88765 * 21 20 19 23 23 C 1.34518 * 106.83510 * 0.36924 * 22 21 20 24 24 O 1.34297 * 108.42285 * 359.77192 * 23 22 21 25 25 H 0.97000 * 119.99720 * 0.02562 * 1 2 3 26 26 H 0.97003 * 119.99899 * 359.97438 * 9 7 2 27 27 H 1.08994 * 109.47766 * 64.93648 * 10 9 7 28 28 H 1.09004 * 109.47077 * 304.92697 * 10 9 7 29 29 H 1.08994 * 110.72163 * 336.67963 * 13 11 10 30 30 H 1.08994 * 110.72045 * 99.78082 * 13 11 10 31 31 H 1.09002 * 110.95944 * 277.33824 * 14 13 11 32 32 H 1.08991 * 111.09922 * 153.44793 * 14 13 11 33 33 H 1.08991 * 110.37070 * 204.23196 * 15 14 13 34 34 H 1.09003 * 110.36430 * 82.02336 * 15 14 13 35 35 H 1.09000 * 109.47125 * 300.01254 * 19 17 16 36 36 H 1.08995 * 109.46626 * 60.00280 * 19 17 16 37 37 H 1.08001 * 126.57792 * 0.02562 * 21 20 19 38 38 H 1.07995 * 126.58144 * 180.16402 * 22 21 20 39 39 H 1.07998 * 125.78590 * 179.75318 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6963 -1.2124 5 1 1.2852 2.7464 -0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0102 -1.2023 0.0005 8 1 3.0902 -1.2023 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6568 0.0017 11 6 1.0684 -4.8171 -0.1227 12 1 0.4378 -4.6739 -1.0001 13 6 0.1924 -4.9021 1.1450 14 6 0.0504 -6.4320 1.3697 15 6 1.4395 -6.9424 0.9119 16 7 1.7994 -6.0879 -0.2342 17 6 2.6560 -6.4173 -1.2212 18 8 2.8084 -5.6719 -2.1658 19 6 3.4247 -7.7116 -1.1510 20 6 4.3057 -7.8392 -2.3669 21 6 5.5704 -7.3933 -2.4723 22 6 6.0145 -7.7244 -3.7730 23 6 4.9917 -8.3455 -4.3876 24 8 3.9595 -8.4122 -3.5311 25 1 -0.4850 0.8401 -0.0004 26 1 0.3554 -2.3881 0.0005 27 1 2.6160 -3.7535 0.9330 28 1 2.7499 -3.6777 -0.8404 29 1 0.6938 -4.4346 1.9924 30 1 -0.7807 -4.4423 0.9729 31 1 -0.7426 -6.8457 0.7466 32 1 -0.1224 -6.6598 2.4215 33 1 1.3773 -7.9857 0.6025 34 1 2.1688 -6.8282 1.7140 35 1 4.0421 -7.7193 -0.2528 36 1 2.7261 -8.5477 -1.1187 37 1 6.1385 -6.8825 -1.7088 38 1 6.9870 -7.5155 -4.1937 39 1 4.9994 -8.7258 -5.3984 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699761090.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:18:41 Heat of formation + Delta-G solvation = -2.356426 kcal Electronic energy + Delta-G solvation = -21490.275133 eV Core-core repulsion = 18207.128698 eV Total energy + Delta-G solvation = -3283.146435 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.57252 -39.99578 -37.39914 -34.49958 -33.20017 -32.42494 -31.33044 -31.21935 -28.76503 -27.09144 -25.05017 -23.22777 -22.06162 -21.77627 -21.15049 -20.22630 -18.91183 -17.40187 -17.31500 -16.79174 -16.37939 -15.73336 -15.06450 -14.83613 -14.45757 -14.08863 -13.71877 -13.44133 -13.17686 -12.87569 -12.82911 -12.71575 -12.67498 -12.56604 -12.18974 -11.91538 -11.49524 -11.16013 -10.88930 -10.79169 -10.54114 -10.39504 -10.03600 -9.91397 -9.78532 -9.61630 -8.80764 -8.48985 -8.43499 -6.86604 -5.71152 -2.99283 1.67024 2.57110 2.72795 2.89647 3.21253 3.48890 3.52675 3.54555 4.44287 4.54464 4.59713 4.67013 4.83859 4.96906 5.00918 5.04828 5.13847 5.22034 5.37986 5.42388 5.57794 5.63414 5.77757 5.80737 5.89598 5.93813 6.03486 6.06695 6.09328 6.18833 6.42843 6.47767 6.55836 6.85036 6.99666 7.10491 7.65620 7.76136 8.30667 8.48033 9.58830 10.15223 10.51033 11.51937 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.016925 B = 0.004372 C = 0.003629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1653.998968 B = 6402.207225 C = 7714.616092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.014 4.014 3 Si 0.908 3.092 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.235 4.235 8 H 0.069 0.931 9 N -0.728 5.728 10 C 0.147 3.853 11 C 0.131 3.869 12 H 0.077 0.923 13 C -0.122 4.122 14 C -0.134 4.134 15 C 0.098 3.902 16 N -0.613 5.613 17 C 0.524 3.476 18 O -0.517 6.517 19 C -0.056 4.056 20 C 0.006 3.994 21 C -0.195 4.195 22 C -0.213 4.213 23 C -0.041 4.041 24 O -0.173 6.173 25 H 0.255 0.745 26 H 0.383 0.617 27 H 0.015 0.985 28 H 0.035 0.965 29 H 0.082 0.918 30 H 0.084 0.916 31 H 0.073 0.927 32 H 0.082 0.918 33 H 0.073 0.927 34 H 0.070 0.930 35 H 0.122 0.878 36 H 0.108 0.892 37 H 0.147 0.853 38 H 0.147 0.853 39 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.525 -21.952 0.409 22.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.210 4.210 3 Si 0.739 3.261 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.367 4.367 8 H 0.087 0.913 9 N -0.372 5.372 10 C 0.019 3.981 11 C 0.028 3.972 12 H 0.095 0.905 13 C -0.160 4.160 14 C -0.172 4.172 15 C -0.025 4.025 16 N -0.349 5.349 17 C 0.311 3.689 18 O -0.391 6.391 19 C -0.095 4.095 20 C -0.044 4.044 21 C -0.214 4.214 22 C -0.232 4.232 23 C -0.109 4.109 24 O -0.069 6.069 25 H 0.065 0.935 26 H 0.217 0.783 27 H 0.033 0.967 28 H 0.053 0.947 29 H 0.101 0.899 30 H 0.103 0.897 31 H 0.092 0.908 32 H 0.101 0.899 33 H 0.091 0.909 34 H 0.088 0.912 35 H 0.140 0.860 36 H 0.126 0.874 37 H 0.165 0.835 38 H 0.165 0.835 39 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges 5.514 -21.566 -0.235 22.261 hybrid contribution 0.428 1.069 -0.050 1.153 sum 5.942 -20.497 -0.286 21.343 Atomic orbital electron populations 1.69647 1.05071 1.25692 1.58016 1.24713 0.95535 0.97591 1.03113 0.86250 0.78513 0.83490 0.77860 1.21275 1.21666 1.21301 1.19178 0.91000 0.84046 1.42435 0.91335 1.42191 1.05745 0.99705 1.89607 1.20930 0.93664 0.85223 0.98305 1.21833 0.93497 0.83328 0.98564 0.90541 1.22694 1.00678 0.95016 0.97571 1.22810 0.95968 0.96624 1.01784 1.22354 0.97017 0.94389 0.88779 1.48512 1.44398 1.17779 1.24171 1.19959 0.79531 0.87606 0.81762 1.90804 1.64242 1.52194 1.31869 1.20080 0.98036 0.97533 0.93883 1.21494 0.94803 1.01260 0.86880 1.21538 0.95713 1.05365 0.98790 1.21797 1.01026 1.04930 0.95421 1.23963 0.85850 1.05135 0.95917 1.83970 1.39265 1.62546 1.21145 0.93521 0.78308 0.96743 0.94690 0.89907 0.89728 0.90783 0.89896 0.90855 0.91167 0.86024 0.87403 0.83550 0.83512 0.78204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -28.86 13.06 55.49 0.72 -28.14 16 2 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 3 Si 0.91 23.16 29.55 -169.99 -5.02 18.14 16 4 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 5 H -0.29 -7.40 7.11 56.52 0.40 -6.99 16 6 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 7 C -0.24 -6.92 9.99 -15.06 -0.15 -7.07 16 8 H 0.07 1.98 7.83 -52.48 -0.41 1.57 16 9 N -0.73 -19.36 5.45 -59.90 -0.33 -19.68 16 10 C 0.15 3.26 5.66 -4.04 -0.02 3.24 16 11 C 0.13 2.30 2.92 -66.95 -0.20 2.10 16 12 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 13 C -0.12 -1.74 6.08 -24.83 -0.15 -1.89 16 14 C -0.13 -1.33 7.10 -24.51 -0.17 -1.50 16 15 C 0.10 0.95 6.64 -2.53 -0.02 0.93 16 16 N -0.61 -8.86 3.07 -163.01 -0.50 -9.36 16 17 C 0.52 8.26 7.57 -10.99 -0.08 8.17 16 18 O -0.52 -10.88 15.20 5.55 0.08 -10.80 16 19 C -0.06 -0.61 5.33 -29.04 -0.15 -0.76 16 20 C 0.01 0.08 5.81 -35.63 -0.21 -0.13 16 21 C -0.19 -2.53 10.81 -39.70 -0.43 -2.96 16 22 C -0.21 -2.49 10.91 -39.70 -0.43 -2.92 16 23 C -0.04 -0.46 12.09 29.42 0.36 -0.10 16 24 O -0.17 -2.38 10.65 5.73 0.06 -2.32 16 25 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 26 H 0.38 10.44 7.44 -40.82 -0.30 10.14 16 27 H 0.01 0.32 8.04 -51.93 -0.42 -0.09 16 28 H 0.04 0.88 6.89 -51.93 -0.36 0.52 16 29 H 0.08 1.27 7.78 -51.93 -0.40 0.86 16 30 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 31 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.07 0.51 7.51 -51.93 -0.39 0.12 16 34 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 35 H 0.12 0.98 8.14 -51.93 -0.42 0.55 16 36 H 0.11 0.89 7.76 -51.93 -0.40 0.49 16 37 H 0.15 1.69 8.06 -52.49 -0.42 1.27 16 38 H 0.15 1.36 8.06 -52.49 -0.42 0.93 16 39 H 0.20 1.41 8.06 -52.49 -0.42 0.99 16 LS Contribution 329.30 15.07 4.96 4.96 Total: -1.00 -36.56 329.30 -7.40 -43.96 By element: Atomic # 1 Polarization: 12.26 SS G_CDS: -5.63 Total: 6.64 kcal Atomic # 6 Polarization: -1.64 SS G_CDS: -1.76 Total: -3.40 kcal Atomic # 7 Polarization: -57.08 SS G_CDS: -0.10 Total: -57.19 kcal Atomic # 8 Polarization: -13.26 SS G_CDS: 0.15 Total: -13.11 kcal Atomic # 14 Polarization: 23.16 SS G_CDS: -5.02 Total: 18.14 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -36.56 -7.40 -43.96 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699761090.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.604 kcal (2) G-P(sol) polarization free energy of solvation -36.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.960 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds