Wall clock time and date at job start Tue Mar 31 2020 00:18:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86798 * 120.00324 * 2 1 4 4 H 1.48492 * 109.47218 * 239.99783 * 3 2 1 5 5 H 1.48506 * 109.46910 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47162 * 119.99789 * 3 2 1 7 7 C 1.38818 * 119.99562 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99706 * 180.02562 * 7 2 1 9 9 N 1.36934 * 120.00221 * 0.02562 * 7 2 1 10 10 C 1.46500 * 119.99695 * 180.02562 * 9 7 2 11 11 C 1.53006 * 109.46793 * 184.93438 * 10 9 7 12 12 H 1.09001 * 109.87427 * 54.33274 * 11 10 9 13 13 C 1.54327 * 110.00834 * 293.23653 * 11 10 9 14 14 C 1.55280 * 103.00528 * 218.39682 * 13 11 10 15 15 C 1.54912 * 101.52835 * 35.35893 * 14 13 11 16 16 N 1.47024 * 109.87937 * 175.35157 * 11 10 9 17 17 C 1.34774 * 125.64925 * 298.48216 * 16 11 10 18 18 O 1.21288 * 120.00154 * 354.95540 * 17 16 11 19 19 C 1.50701 * 120.00217 * 174.94439 * 17 16 11 20 20 C 1.50695 * 109.47176 * 180.02562 * 19 17 16 21 21 C 1.34511 * 125.79091 * 89.72253 * 20 19 17 22 22 C 1.41381 * 106.84447 * 179.88765 * 21 20 19 23 23 C 1.34518 * 106.83510 * 0.36924 * 22 21 20 24 24 O 1.34297 * 108.42285 * 359.77192 * 23 22 21 25 25 H 0.97000 * 119.99720 * 0.02562 * 1 2 3 26 26 H 0.97003 * 119.99899 * 359.97438 * 9 7 2 27 27 H 1.08994 * 109.47766 * 64.93648 * 10 9 7 28 28 H 1.09004 * 109.47077 * 304.92697 * 10 9 7 29 29 H 1.08994 * 110.72163 * 336.67963 * 13 11 10 30 30 H 1.08994 * 110.72045 * 99.78082 * 13 11 10 31 31 H 1.09002 * 110.95944 * 277.33824 * 14 13 11 32 32 H 1.08991 * 111.09922 * 153.44793 * 14 13 11 33 33 H 1.08991 * 110.37070 * 204.23196 * 15 14 13 34 34 H 1.09003 * 110.36430 * 82.02336 * 15 14 13 35 35 H 1.09000 * 109.47125 * 300.01254 * 19 17 16 36 36 H 1.08995 * 109.46626 * 60.00280 * 19 17 16 37 37 H 1.08001 * 126.57792 * 0.02562 * 21 20 19 38 38 H 1.07995 * 126.58144 * 180.16402 * 22 21 20 39 39 H 1.07998 * 125.78590 * 179.75318 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6963 -1.2124 5 1 1.2852 2.7464 -0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0102 -1.2023 0.0005 8 1 3.0902 -1.2023 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6568 0.0017 11 6 1.0684 -4.8171 -0.1227 12 1 0.4378 -4.6739 -1.0001 13 6 0.1924 -4.9021 1.1450 14 6 0.0504 -6.4320 1.3697 15 6 1.4395 -6.9424 0.9119 16 7 1.7994 -6.0879 -0.2342 17 6 2.6560 -6.4173 -1.2212 18 8 2.8084 -5.6719 -2.1658 19 6 3.4247 -7.7116 -1.1510 20 6 4.3057 -7.8392 -2.3669 21 6 5.5704 -7.3933 -2.4723 22 6 6.0145 -7.7244 -3.7730 23 6 4.9917 -8.3455 -4.3876 24 8 3.9595 -8.4122 -3.5311 25 1 -0.4850 0.8401 -0.0004 26 1 0.3554 -2.3881 0.0005 27 1 2.6160 -3.7535 0.9330 28 1 2.7499 -3.6777 -0.8404 29 1 0.6938 -4.4346 1.9924 30 1 -0.7807 -4.4423 0.9729 31 1 -0.7426 -6.8457 0.7466 32 1 -0.1224 -6.6598 2.4215 33 1 1.3773 -7.9857 0.6025 34 1 2.1688 -6.8282 1.7140 35 1 4.0421 -7.7193 -0.2528 36 1 2.7261 -8.5477 -1.1187 37 1 6.1385 -6.8825 -1.7088 38 1 6.9870 -7.5155 -4.1937 39 1 4.9994 -8.7258 -5.3984 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699761090.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:18:41 Heat of formation + Delta-G solvation = -28.040378 kcal Electronic energy + Delta-G solvation = -21491.388873 eV Core-core repulsion = 18207.128698 eV Total energy + Delta-G solvation = -3284.260175 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -43.48538 -41.20245 -38.67564 -36.44378 -34.20989 -33.68275 -33.07285 -32.23443 -30.34503 -28.03900 -26.74278 -24.84119 -23.56967 -22.69356 -22.16347 -21.31715 -20.21667 -19.15382 -18.32464 -18.14647 -17.55146 -16.81700 -16.49056 -16.20221 -15.86528 -15.41855 -15.08898 -14.99882 -14.90608 -14.08801 -13.86241 -13.75161 -13.67437 -13.60731 -13.53939 -13.09486 -12.92291 -12.78675 -12.65995 -12.25235 -12.03892 -11.91674 -11.76822 -11.57156 -11.08511 -10.93795 -10.82327 -9.68679 -9.39403 -9.07849 -8.00152 -5.30316 0.73570 1.42972 1.47474 1.53302 1.56390 1.64537 1.96211 2.21120 2.53634 3.32183 3.46074 3.65607 3.67431 3.90766 3.96002 4.12271 4.13430 4.15163 4.31249 4.34624 4.36999 4.44117 4.54242 4.75719 4.83255 4.92510 4.94747 5.00623 5.03679 5.14314 5.16882 5.20593 5.35500 5.40936 5.46055 5.60672 6.19317 6.21356 6.54147 7.13152 7.27894 7.99081 8.26807 9.22942 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.016925 B = 0.004372 C = 0.003629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1653.998968 B = 6402.207225 C = 7714.616092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.965 5.965 2 C -0.068 4.068 3 Si 0.976 3.024 4 H -0.283 1.283 5 H -0.288 1.288 6 H -0.273 1.273 7 C -0.255 4.255 8 H 0.066 0.934 9 N -0.737 5.737 10 C 0.155 3.845 11 C 0.136 3.864 12 H 0.044 0.956 13 C -0.119 4.119 14 C -0.119 4.119 15 C 0.091 3.909 16 N -0.610 5.610 17 C 0.516 3.484 18 O -0.584 6.584 19 C -0.043 4.043 20 C -0.017 4.017 21 C -0.215 4.215 22 C -0.231 4.231 23 C -0.043 4.043 24 O -0.192 6.192 25 H 0.254 0.746 26 H 0.377 0.623 27 H 0.021 0.979 28 H 0.001 0.999 29 H 0.073 0.927 30 H 0.074 0.926 31 H 0.082 0.918 32 H 0.115 0.885 33 H 0.115 0.885 34 H 0.090 0.910 35 H 0.156 0.844 36 H 0.143 0.857 37 H 0.153 0.847 38 H 0.167 0.833 39 H 0.237 0.763 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.072 -23.964 1.663 24.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.615 5.615 2 C -0.261 4.261 3 Si 0.804 3.196 4 H -0.210 1.210 5 H -0.213 1.213 6 H -0.199 1.199 7 C -0.387 4.387 8 H 0.084 0.916 9 N -0.381 5.381 10 C 0.027 3.973 11 C 0.032 3.968 12 H 0.062 0.938 13 C -0.157 4.157 14 C -0.157 4.157 15 C -0.029 4.029 16 N -0.344 5.344 17 C 0.306 3.694 18 O -0.464 6.464 19 C -0.081 4.081 20 C -0.067 4.067 21 C -0.234 4.234 22 C -0.249 4.249 23 C -0.110 4.110 24 O -0.088 6.088 25 H 0.063 0.937 26 H 0.209 0.791 27 H 0.039 0.961 28 H 0.019 0.981 29 H 0.092 0.908 30 H 0.093 0.907 31 H 0.101 0.899 32 H 0.133 0.867 33 H 0.133 0.867 34 H 0.108 0.892 35 H 0.174 0.826 36 H 0.161 0.839 37 H 0.170 0.830 38 H 0.184 0.816 39 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges 6.073 -23.637 1.066 24.428 hybrid contribution 0.290 1.686 -0.486 1.778 sum 6.362 -21.952 0.580 22.862 Atomic orbital electron populations 1.69799 1.06486 1.26420 1.58825 1.25570 0.96513 1.01004 1.03004 0.85182 0.77316 0.78906 0.78163 1.20980 1.21328 1.19892 1.19522 0.91215 0.85475 1.42446 0.91572 1.42324 1.05571 1.00677 1.89509 1.20917 0.94062 0.85543 0.96778 1.21529 0.92585 0.83593 0.99089 0.93756 1.22605 0.99062 0.98935 0.95129 1.22839 0.96535 0.92292 1.04038 1.22778 0.97128 0.95527 0.87505 1.48629 1.43505 1.17011 1.25290 1.20936 0.79165 0.88598 0.80746 1.90770 1.66370 1.54643 1.34614 1.20188 0.98344 0.95364 0.94250 1.21955 0.95374 1.01765 0.87588 1.21879 0.96280 1.05478 0.99740 1.22167 1.02264 1.05265 0.95247 1.24756 0.85050 1.04258 0.96902 1.83961 1.40270 1.62928 1.21679 0.93682 0.79074 0.96137 0.98140 0.90850 0.90746 0.89944 0.86711 0.86712 0.89162 0.82604 0.83893 0.82958 0.81571 0.74661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.69 13.06 21.65 0.28 -60.40 16 2 C -0.07 -4.10 5.50 84.86 0.47 -3.63 16 3 Si 0.98 48.07 29.55 68.60 2.03 50.09 16 4 H -0.28 -13.74 7.11 99.48 0.71 -13.04 16 5 H -0.29 -13.91 7.11 99.48 0.71 -13.21 16 6 H -0.27 -12.79 7.11 99.48 0.71 -12.09 16 7 C -0.25 -15.40 9.99 84.04 0.84 -14.56 16 8 H 0.07 3.93 7.83 -2.91 -0.02 3.91 16 9 N -0.74 -40.87 5.45 -343.44 -1.87 -42.74 16 10 C 0.15 7.17 5.66 86.38 0.49 7.66 16 11 C 0.14 4.93 2.92 45.34 0.13 5.06 16 12 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 13 C -0.12 -3.35 6.08 31.83 0.19 -3.15 16 14 C -0.12 -1.96 7.10 32.03 0.23 -1.73 16 15 C 0.09 1.41 6.64 86.86 0.58 1.99 16 16 N -0.61 -16.98 3.07 -788.03 -2.42 -19.40 16 17 C 0.52 16.05 7.57 87.66 0.66 16.71 16 18 O -0.58 -25.76 15.20 -3.05 -0.05 -25.81 16 19 C -0.04 -0.83 5.33 29.10 0.15 -0.68 16 20 C -0.02 -0.43 5.81 24.83 0.14 -0.29 16 21 C -0.21 -5.50 10.81 22.19 0.24 -5.26 16 22 C -0.23 -5.23 10.91 22.19 0.24 -4.99 16 23 C -0.04 -0.91 12.09 66.97 0.81 -0.11 16 24 O -0.19 -5.11 10.65 -2.42 -0.03 -5.14 16 25 H 0.25 15.37 8.31 -92.71 -0.77 14.60 16 26 H 0.38 21.50 7.44 -92.71 -0.69 20.81 16 27 H 0.02 0.93 8.04 -2.39 -0.02 0.91 16 28 H 0.00 0.03 6.89 -2.38 -0.02 0.01 16 29 H 0.07 2.20 7.78 -2.39 -0.02 2.18 16 30 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 31 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 32 H 0.11 1.25 8.14 -2.39 -0.02 1.23 16 33 H 0.11 0.92 7.51 -2.39 -0.02 0.91 16 34 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 35 H 0.16 1.93 8.14 -2.39 -0.02 1.91 16 36 H 0.14 1.76 7.76 -2.39 -0.02 1.74 16 37 H 0.15 3.51 8.06 -2.91 -0.02 3.48 16 38 H 0.17 2.90 8.06 -2.91 -0.02 2.88 16 39 H 0.24 2.85 8.06 -2.91 -0.02 2.82 16 Total: -1.00 -84.41 329.30 3.49 -80.92 By element: Atomic # 1 Polarization: 25.09 SS G_CDS: 0.36 Total: 25.45 kcal Atomic # 6 Polarization: -8.17 SS G_CDS: 5.18 Total: -2.99 kcal Atomic # 7 Polarization: -118.54 SS G_CDS: -4.01 Total: -122.54 kcal Atomic # 8 Polarization: -30.87 SS G_CDS: -0.07 Total: -30.94 kcal Atomic # 14 Polarization: 48.07 SS G_CDS: 2.03 Total: 50.09 kcal Total: -84.41 3.49 -80.92 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699761090.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.883 kcal (2) G-P(sol) polarization free energy of solvation -84.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.924 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds