Wall clock time and date at job start Tue Mar 31 2020 00:33:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86796 * 120.00218 * 2 1 4 4 H 1.48501 * 109.46922 * 90.00236 * 3 2 1 5 5 H 1.48496 * 109.47354 * 210.00432 * 3 2 1 6 6 H 1.48501 * 109.47428 * 330.00540 * 3 2 1 7 7 C 1.38812 * 119.99535 * 180.28285 * 2 1 3 8 8 H 1.08002 * 119.99473 * 179.97438 * 7 2 1 9 9 N 1.36931 * 120.00429 * 359.97438 * 7 2 1 10 10 C 1.46499 * 120.00122 * 180.02562 * 9 7 2 11 11 C 1.53004 * 109.47198 * 180.02562 * 10 9 7 12 12 C 1.52992 * 109.47319 * 180.02562 * 11 10 9 13 13 H 1.09008 * 110.88479 * 305.69806 * 12 11 10 14 14 C 1.55159 * 111.00782 * 181.82000 * 12 11 10 15 15 C 1.54364 * 102.92491 * 206.45019 * 14 12 11 16 16 N 1.47029 * 107.28613 * 22.13842 * 15 14 12 17 17 C 1.34775 * 125.64566 * 181.05822 * 16 15 14 18 18 O 1.21615 * 119.99493 * 180.02562 * 17 16 15 19 19 C 1.47381 * 120.00451 * 0.03745 * 17 16 15 20 20 C 1.47017 * 127.19437 * 180.02562 * 19 17 16 21 21 C 1.34176 * 105.95115 * 180.02562 * 20 19 17 22 22 O 1.34204 * 109.12892 * 359.97438 * 21 20 19 23 23 C 1.33661 * 110.90588 * 359.72873 * 22 21 20 24 24 C 1.47420 * 108.70004 * 1.09015 * 16 15 14 25 25 H 0.97005 * 119.99717 * 359.71788 * 1 2 3 26 26 H 0.97001 * 120.00088 * 0.02562 * 9 7 2 27 27 H 1.08995 * 109.47424 * 299.99703 * 10 9 7 28 28 H 1.08998 * 109.47492 * 60.00128 * 10 9 7 29 29 H 1.09000 * 109.46887 * 300.00491 * 11 10 9 30 30 H 1.08998 * 109.46846 * 59.99668 * 11 10 9 31 31 H 1.08999 * 110.71493 * 324.79063 * 14 12 11 32 32 H 1.09002 * 110.71928 * 88.05525 * 14 12 11 33 33 H 1.08999 * 109.84886 * 262.72883 * 15 14 12 34 34 H 1.09003 * 109.90597 * 141.57095 * 15 14 12 35 35 H 1.07995 * 127.02136 * 359.97438 * 20 19 17 36 36 H 1.07999 * 125.43228 * 180.02562 * 21 20 19 37 37 H 1.08000 * 125.79648 * 180.28977 * 23 22 21 38 38 H 1.09003 * 110.36391 * 217.03099 * 24 16 15 39 39 H 1.09004 * 110.46134 * 94.76365 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0463 1.4001 5 1 3.5478 1.4401 -0.7001 6 1 1.4478 2.6527 -0.6999 7 6 2.0102 -1.2022 -0.0059 8 1 3.0902 -1.2022 -0.0064 9 7 1.3255 -2.3880 -0.0113 10 6 2.0580 -3.6568 -0.0170 11 6 1.0637 -4.8197 -0.0228 12 6 1.8286 -6.1447 -0.0281 13 1 2.5382 -6.1804 -0.8549 14 6 0.8529 -7.3500 -0.0802 15 6 1.6636 -8.4796 0.5903 16 7 2.6922 -7.8426 1.4257 17 6 3.6184 -8.4893 2.1608 18 8 4.4236 -7.8570 2.8172 19 6 3.6556 -9.9626 2.1691 20 6 4.5899 -10.8240 2.9083 21 6 4.2433 -12.0854 2.6100 22 8 3.1975 -12.0669 1.7691 23 6 2.8262 -10.8120 1.4972 24 6 2.5422 -6.3794 1.3266 25 1 -0.4850 0.8401 0.0041 26 1 0.3555 -2.3880 -0.0113 27 1 2.6846 -3.7106 -0.9072 28 1 2.6847 -3.7186 0.8727 29 1 0.4367 -4.7660 0.8672 30 1 0.4374 -4.7577 -0.9127 31 1 -0.0534 -7.1371 0.4867 32 1 0.6123 -7.6071 -1.1117 33 1 2.1363 -9.0987 -0.1721 34 1 1.0072 -9.0893 1.2113 35 1 5.3920 -10.5062 3.5579 36 1 4.7279 -12.9737 2.9873 37 1 2.0102 -10.5203 0.8527 38 1 3.5196 -5.8968 1.3291 39 1 1.9318 -6.0024 2.1472 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700050087.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:33:30 Heat of formation + Delta-G solvation = -4.178188 kcal Electronic energy + Delta-G solvation = -20852.302868 eV Core-core repulsion = 17569.077435 eV Total energy + Delta-G solvation = -3283.225432 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.85988 -40.07220 -37.76234 -35.19020 -33.44446 -32.75638 -31.11152 -30.33040 -29.47662 -27.12929 -25.07283 -23.45176 -22.46156 -21.76299 -21.20896 -20.23945 -19.99742 -17.79159 -17.11077 -16.78163 -16.52605 -16.17104 -15.57557 -14.94812 -14.60028 -14.30281 -14.02188 -13.56084 -13.42905 -13.25034 -13.08796 -12.95749 -12.78719 -12.57838 -12.14386 -11.71383 -11.36536 -11.09659 -10.82477 -10.68111 -10.50341 -10.34967 -10.13471 -10.11525 -9.97886 -9.65822 -9.15477 -8.84608 -8.80896 -6.89768 -5.74465 -3.02883 1.05846 1.77329 2.53230 2.83433 3.17467 3.46047 3.51048 3.52720 4.16228 4.27618 4.35820 4.49077 4.59513 4.68418 4.73595 4.97297 5.07277 5.20378 5.30977 5.35368 5.49654 5.56169 5.58555 5.63244 5.73666 5.79965 5.89852 5.94174 6.05728 6.13785 6.23681 6.37005 6.37834 6.61642 6.85257 6.89107 7.33346 7.72966 8.03655 8.44922 9.55873 10.14012 10.48461 11.48629 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.041118 B = 0.002827 C = 0.002680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 680.804455 B = 9900.796858 C =10446.828121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.016 4.016 3 Si 0.907 3.093 4 H -0.290 1.290 5 H -0.282 1.282 6 H -0.291 1.291 7 C -0.238 4.238 8 H 0.070 0.930 9 N -0.734 5.734 10 C 0.151 3.849 11 C -0.115 4.115 12 C -0.094 4.094 13 H 0.086 0.914 14 C -0.128 4.128 15 C 0.088 3.912 16 N -0.615 5.615 17 C 0.597 3.403 18 O -0.534 6.534 19 C -0.229 4.229 20 C -0.165 4.165 21 C -0.042 4.042 22 O -0.176 6.176 23 C 0.006 3.994 24 C 0.111 3.889 25 H 0.255 0.745 26 H 0.383 0.617 27 H 0.018 0.982 28 H 0.020 0.980 29 H 0.066 0.934 30 H 0.069 0.931 31 H 0.082 0.918 32 H 0.085 0.915 33 H 0.072 0.928 34 H 0.071 0.929 35 H 0.160 0.840 36 H 0.209 0.791 37 H 0.220 0.780 38 H 0.083 0.917 39 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.869 -27.050 1.261 27.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.211 4.211 3 Si 0.738 3.262 4 H -0.217 1.217 5 H -0.207 1.207 6 H -0.218 1.218 7 C -0.369 4.369 8 H 0.088 0.912 9 N -0.378 5.378 10 C 0.023 3.977 11 C -0.153 4.153 12 C -0.114 4.114 13 H 0.104 0.896 14 C -0.166 4.166 15 C -0.035 4.035 16 N -0.349 5.349 17 C 0.387 3.613 18 O -0.412 6.412 19 C -0.233 4.233 20 C -0.185 4.185 21 C -0.108 4.108 22 O -0.071 6.071 23 C -0.064 4.064 24 C -0.010 4.010 25 H 0.065 0.935 26 H 0.217 0.783 27 H 0.036 0.964 28 H 0.037 0.963 29 H 0.085 0.915 30 H 0.088 0.912 31 H 0.101 0.899 32 H 0.104 0.896 33 H 0.090 0.910 34 H 0.090 0.910 35 H 0.177 0.823 36 H 0.225 0.775 37 H 0.236 0.764 38 H 0.102 0.898 39 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 3.377 -26.882 1.550 27.138 hybrid contribution 0.238 1.083 0.107 1.114 sum 3.615 -25.800 1.658 26.104 Atomic orbital electron populations 1.69664 1.05114 1.25616 1.58010 1.24746 0.95550 0.97723 1.03122 0.86178 0.78647 0.83778 0.77550 1.21700 1.20750 1.21771 1.19249 0.91072 0.84215 1.42400 0.91185 1.42362 1.05863 1.00097 1.89518 1.20684 0.93560 0.85566 0.97878 1.21684 0.98578 0.92408 1.02603 1.22358 0.97199 0.94929 0.96912 0.89550 1.22750 0.98421 0.93939 1.01485 1.22388 0.90200 0.96997 0.93904 1.48354 1.31702 1.08272 1.46541 1.16900 0.79965 0.85488 0.78914 1.90814 1.39547 1.68113 1.42717 1.21522 1.01723 0.93936 1.06126 1.22807 1.01604 0.91250 1.02825 1.23962 0.90922 0.99632 0.96312 1.83815 1.41493 1.29734 1.52098 1.25301 1.00100 0.80596 1.00409 1.22436 1.02023 0.78805 0.97767 0.93550 0.78332 0.96430 0.96251 0.91529 0.91205 0.89927 0.89602 0.91040 0.91045 0.82252 0.77469 0.76417 0.89818 0.90732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -28.63 13.06 55.49 0.72 -27.91 16 2 C -0.02 -0.46 5.50 -17.43 -0.10 -0.56 16 3 Si 0.91 22.81 29.55 -169.99 -5.02 17.78 16 4 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 5 H -0.28 -6.90 7.11 56.52 0.40 -6.49 16 6 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 7 C -0.24 -6.82 9.99 -15.06 -0.15 -6.97 16 8 H 0.07 1.96 7.83 -52.49 -0.41 1.55 16 9 N -0.73 -18.88 5.60 -59.91 -0.34 -19.22 16 10 C 0.15 3.01 6.14 -4.04 -0.02 2.98 16 11 C -0.11 -1.71 4.84 -26.73 -0.13 -1.84 16 12 C -0.09 -1.10 3.04 -88.48 -0.27 -1.37 16 13 H 0.09 1.01 8.14 -51.92 -0.42 0.59 16 14 C -0.13 -1.07 6.42 -24.87 -0.16 -1.23 16 15 C 0.09 0.69 5.01 -3.04 -0.02 0.68 16 16 N -0.61 -7.42 3.33 -171.77 -0.57 -7.99 16 17 C 0.60 8.49 7.84 -12.54 -0.10 8.39 16 18 O -0.53 -9.77 17.24 5.26 0.09 -9.68 16 19 C -0.23 -2.57 6.28 -103.28 -0.65 -3.22 16 20 C -0.17 -1.62 11.01 -37.46 -0.41 -2.04 16 21 C -0.04 -0.30 12.03 29.30 0.35 0.05 16 22 O -0.18 -1.44 10.52 7.66 0.08 -1.36 16 23 C 0.01 0.05 10.64 30.07 0.32 0.37 16 24 C 0.11 1.48 5.71 -2.54 -0.01 1.47 16 25 H 0.25 7.52 8.31 -40.82 -0.34 7.18 16 26 H 0.38 10.24 7.67 -40.82 -0.31 9.93 16 27 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.02 0.40 7.59 -51.93 -0.39 0.01 16 29 H 0.07 1.01 8.03 -51.93 -0.42 0.59 16 30 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 31 H 0.08 0.68 8.04 -51.93 -0.42 0.26 16 32 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.07 0.43 6.90 -51.93 -0.36 0.07 16 34 H 0.07 0.43 7.03 -51.93 -0.37 0.07 16 35 H 0.16 1.48 8.06 -52.49 -0.42 1.06 16 36 H 0.21 0.64 8.06 -52.49 -0.42 0.21 16 37 H 0.22 1.09 4.46 -52.49 -0.23 0.85 16 38 H 0.08 1.27 8.00 -51.93 -0.42 0.85 16 39 H 0.07 1.04 7.95 -51.93 -0.41 0.62 16 LS Contribution 325.57 15.07 4.91 4.91 Total: -1.00 -35.61 325.57 -6.88 -42.50 By element: Atomic # 1 Polarization: 9.66 SS G_CDS: -5.41 Total: 4.25 kcal Atomic # 6 Polarization: -1.94 SS G_CDS: -1.35 Total: -3.29 kcal Atomic # 7 Polarization: -54.93 SS G_CDS: -0.18 Total: -55.12 kcal Atomic # 8 Polarization: -11.21 SS G_CDS: 0.17 Total: -11.04 kcal Atomic # 14 Polarization: 22.81 SS G_CDS: -5.02 Total: 17.78 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -35.61 -6.88 -42.50 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700050087.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.318 kcal (2) G-P(sol) polarization free energy of solvation -35.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.496 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds