Wall clock time and date at job start Tue Mar 31 2020 00:33:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86796 * 120.00218 * 2 1 4 4 H 1.48501 * 109.46922 * 90.00236 * 3 2 1 5 5 H 1.48496 * 109.47354 * 210.00432 * 3 2 1 6 6 H 1.48501 * 109.47428 * 330.00540 * 3 2 1 7 7 C 1.38812 * 119.99535 * 180.28285 * 2 1 3 8 8 H 1.08002 * 119.99473 * 179.97438 * 7 2 1 9 9 N 1.36931 * 120.00429 * 359.97438 * 7 2 1 10 10 C 1.46499 * 120.00122 * 180.02562 * 9 7 2 11 11 C 1.53004 * 109.47198 * 180.02562 * 10 9 7 12 12 C 1.52992 * 109.47319 * 180.02562 * 11 10 9 13 13 H 1.09008 * 110.88479 * 305.69806 * 12 11 10 14 14 C 1.55159 * 111.00782 * 181.82000 * 12 11 10 15 15 C 1.54364 * 102.92491 * 206.45019 * 14 12 11 16 16 N 1.47029 * 107.28613 * 22.13842 * 15 14 12 17 17 C 1.34775 * 125.64566 * 181.05822 * 16 15 14 18 18 O 1.21615 * 119.99493 * 180.02562 * 17 16 15 19 19 C 1.47381 * 120.00451 * 0.03745 * 17 16 15 20 20 C 1.47017 * 127.19437 * 180.02562 * 19 17 16 21 21 C 1.34176 * 105.95115 * 180.02562 * 20 19 17 22 22 O 1.34204 * 109.12892 * 359.97438 * 21 20 19 23 23 C 1.33661 * 110.90588 * 359.72873 * 22 21 20 24 24 C 1.47420 * 108.70004 * 1.09015 * 16 15 14 25 25 H 0.97005 * 119.99717 * 359.71788 * 1 2 3 26 26 H 0.97001 * 120.00088 * 0.02562 * 9 7 2 27 27 H 1.08995 * 109.47424 * 299.99703 * 10 9 7 28 28 H 1.08998 * 109.47492 * 60.00128 * 10 9 7 29 29 H 1.09000 * 109.46887 * 300.00491 * 11 10 9 30 30 H 1.08998 * 109.46846 * 59.99668 * 11 10 9 31 31 H 1.08999 * 110.71493 * 324.79063 * 14 12 11 32 32 H 1.09002 * 110.71928 * 88.05525 * 14 12 11 33 33 H 1.08999 * 109.84886 * 262.72883 * 15 14 12 34 34 H 1.09003 * 109.90597 * 141.57095 * 15 14 12 35 35 H 1.07995 * 127.02136 * 359.97438 * 20 19 17 36 36 H 1.07999 * 125.43228 * 180.02562 * 21 20 19 37 37 H 1.08000 * 125.79648 * 180.28977 * 23 22 21 38 38 H 1.09003 * 110.36391 * 217.03099 * 24 16 15 39 39 H 1.09004 * 110.46134 * 94.76365 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0463 1.4001 5 1 3.5478 1.4401 -0.7001 6 1 1.4478 2.6527 -0.6999 7 6 2.0102 -1.2022 -0.0059 8 1 3.0902 -1.2022 -0.0064 9 7 1.3255 -2.3880 -0.0113 10 6 2.0580 -3.6568 -0.0170 11 6 1.0637 -4.8197 -0.0228 12 6 1.8286 -6.1447 -0.0281 13 1 2.5382 -6.1804 -0.8549 14 6 0.8529 -7.3500 -0.0802 15 6 1.6636 -8.4796 0.5903 16 7 2.6922 -7.8426 1.4257 17 6 3.6184 -8.4893 2.1608 18 8 4.4236 -7.8570 2.8172 19 6 3.6556 -9.9626 2.1691 20 6 4.5899 -10.8240 2.9083 21 6 4.2433 -12.0854 2.6100 22 8 3.1975 -12.0669 1.7691 23 6 2.8262 -10.8120 1.4972 24 6 2.5422 -6.3794 1.3266 25 1 -0.4850 0.8401 0.0041 26 1 0.3555 -2.3880 -0.0113 27 1 2.6846 -3.7106 -0.9072 28 1 2.6847 -3.7186 0.8727 29 1 0.4367 -4.7660 0.8672 30 1 0.4374 -4.7577 -0.9127 31 1 -0.0534 -7.1371 0.4867 32 1 0.6123 -7.6071 -1.1117 33 1 2.1363 -9.0987 -0.1721 34 1 1.0072 -9.0893 1.2113 35 1 5.3920 -10.5062 3.5579 36 1 4.7279 -12.9737 2.9873 37 1 2.0102 -10.5203 0.8527 38 1 3.5196 -5.8968 1.3291 39 1 1.9318 -6.0024 2.1472 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700050087.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:33:29 Heat of formation + Delta-G solvation = -29.261382 kcal Electronic energy + Delta-G solvation = -20853.390557 eV Core-core repulsion = 17569.077435 eV Total energy + Delta-G solvation = -3284.313121 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -43.51394 -41.03961 -38.85360 -36.88272 -34.75338 -33.78921 -32.68844 -31.05257 -30.66783 -28.44379 -26.34991 -25.04669 -23.38865 -22.82792 -22.17303 -21.28182 -20.85627 -19.16726 -18.56090 -17.60881 -17.39608 -17.03593 -16.67173 -16.44830 -15.93257 -15.37471 -15.22009 -15.08414 -14.92505 -14.36999 -14.12630 -13.86011 -13.79412 -13.47009 -13.23715 -13.01175 -12.86366 -12.82558 -12.32605 -12.18082 -12.00467 -11.71012 -11.57300 -11.43009 -11.23398 -10.94429 -10.88451 -9.82231 -9.73803 -9.02119 -7.97894 -5.26684 0.31830 1.10163 1.45487 1.47473 1.55974 1.75853 2.12404 2.23235 2.54238 3.33329 3.35706 3.56868 3.63878 3.75796 3.78616 4.00392 4.15313 4.23074 4.31913 4.46994 4.49218 4.50819 4.59603 4.71943 4.75198 4.79830 4.88668 4.93829 4.97138 5.14187 5.16732 5.27375 5.31606 5.37903 5.45690 5.48106 5.97599 6.25573 6.40294 7.01885 7.31445 8.07689 8.31381 9.25645 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.041118 B = 0.002827 C = 0.002680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 680.804455 B = 9900.796858 C =10446.828121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.968 5.968 2 C -0.075 4.075 3 Si 0.974 3.026 4 H -0.287 1.287 5 H -0.271 1.271 6 H -0.291 1.291 7 C -0.250 4.250 8 H 0.071 0.929 9 N -0.747 5.747 10 C 0.147 3.853 11 C -0.100 4.100 12 C -0.085 4.085 13 H 0.090 0.910 14 C -0.117 4.117 15 C 0.080 3.920 16 N -0.613 5.613 17 C 0.589 3.411 18 O -0.596 6.596 19 C -0.268 4.268 20 C -0.203 4.203 21 C -0.017 4.017 22 O -0.174 6.174 23 C 0.035 3.965 24 C 0.109 3.891 25 H 0.253 0.747 26 H 0.376 0.624 27 H 0.018 0.982 28 H 0.010 0.990 29 H 0.063 0.937 30 H 0.078 0.922 31 H 0.087 0.913 32 H 0.115 0.885 33 H 0.100 0.900 34 H 0.100 0.900 35 H 0.151 0.849 36 H 0.250 0.750 37 H 0.253 0.747 38 H 0.053 0.947 39 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.126 -29.684 0.019 29.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.619 5.619 2 C -0.267 4.267 3 Si 0.802 3.198 4 H -0.214 1.214 5 H -0.196 1.196 6 H -0.217 1.217 7 C -0.382 4.382 8 H 0.089 0.911 9 N -0.390 5.390 10 C 0.021 3.979 11 C -0.138 4.138 12 C -0.105 4.105 13 H 0.108 0.892 14 C -0.155 4.155 15 C -0.041 4.041 16 N -0.345 5.345 17 C 0.381 3.619 18 O -0.479 6.479 19 C -0.272 4.272 20 C -0.223 4.223 21 C -0.083 4.083 22 O -0.069 6.069 23 C -0.035 4.035 24 C -0.014 4.014 25 H 0.061 0.939 26 H 0.208 0.792 27 H 0.036 0.964 28 H 0.028 0.972 29 H 0.082 0.918 30 H 0.096 0.904 31 H 0.106 0.894 32 H 0.133 0.867 33 H 0.118 0.882 34 H 0.118 0.882 35 H 0.168 0.832 36 H 0.266 0.734 37 H 0.268 0.732 38 H 0.071 0.929 39 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 2.628 -29.569 0.280 29.687 hybrid contribution 0.490 1.832 0.504 1.962 sum 3.118 -27.737 0.783 27.923 Atomic orbital electron populations 1.69808 1.06502 1.26191 1.59370 1.25577 0.96495 1.01102 1.03552 0.85140 0.77728 0.79434 0.77476 1.21440 1.19570 1.21699 1.19628 0.91409 0.85639 1.41488 0.91121 1.42586 1.05726 1.01289 1.89424 1.20872 0.94505 0.85374 0.97170 1.21522 0.97495 0.91944 1.02807 1.22216 0.97801 0.94775 0.95692 0.89157 1.22768 0.97448 0.91767 1.03485 1.22769 0.89633 0.97269 0.94450 1.48425 1.32020 1.07747 1.46331 1.17445 0.79428 0.86812 0.78226 1.90764 1.42087 1.69533 1.45480 1.21447 1.04282 0.92483 1.09000 1.22953 1.02480 0.92550 1.04310 1.24620 0.89531 0.99827 0.94295 1.83871 1.41550 1.29477 1.51955 1.25769 0.99172 0.79857 0.98654 1.22314 1.00410 0.80051 0.98631 0.93852 0.79246 0.96382 0.97181 0.91844 0.90371 0.89400 0.86688 0.88160 0.88237 0.83171 0.73431 0.73155 0.92861 0.91925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.03 13.06 21.65 0.28 -59.75 16 2 C -0.07 -4.41 5.50 84.86 0.47 -3.95 16 3 Si 0.97 47.24 29.55 68.60 2.03 49.26 16 4 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 5 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 6 H -0.29 -13.97 7.11 99.48 0.71 -13.27 16 7 C -0.25 -14.49 9.99 84.03 0.84 -13.65 16 8 H 0.07 3.99 7.83 -2.91 -0.02 3.97 16 9 N -0.75 -39.10 5.60 -343.46 -1.92 -41.03 16 10 C 0.15 5.97 6.14 86.38 0.53 6.50 16 11 C -0.10 -2.90 4.84 30.59 0.15 -2.75 16 12 C -0.09 -1.87 3.04 -9.41 -0.03 -1.90 16 13 H 0.09 1.96 8.14 -2.38 -0.02 1.94 16 14 C -0.12 -1.52 6.42 31.80 0.20 -1.31 16 15 C 0.08 0.96 5.01 86.74 0.43 1.40 16 16 N -0.61 -14.42 3.33 -815.62 -2.71 -17.13 16 17 C 0.59 17.19 7.84 86.65 0.68 17.87 16 18 O -0.60 -23.53 17.24 -4.08 -0.07 -23.60 16 19 C -0.27 -5.80 6.28 -18.99 -0.12 -5.92 16 20 C -0.20 -3.92 11.01 23.65 0.26 -3.66 16 21 C -0.02 -0.20 12.03 66.89 0.80 0.60 16 22 O -0.17 -2.18 10.52 4.49 0.05 -2.14 16 23 C 0.04 0.46 10.64 67.39 0.72 1.18 16 24 C 0.11 2.97 5.71 86.85 0.50 3.46 16 25 H 0.25 15.10 8.31 -92.70 -0.77 14.33 16 26 H 0.38 20.45 7.67 -92.71 -0.71 19.74 16 27 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 28 H 0.01 0.43 7.59 -2.39 -0.02 0.42 16 29 H 0.06 1.90 8.03 -2.39 -0.02 1.88 16 30 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 31 H 0.09 1.11 8.04 -2.39 -0.02 1.09 16 32 H 0.11 0.93 8.14 -2.39 -0.02 0.91 16 33 H 0.10 0.70 6.90 -2.39 -0.02 0.68 16 34 H 0.10 0.72 7.03 -2.39 -0.02 0.70 16 35 H 0.15 3.01 8.06 -2.91 -0.02 2.99 16 36 H 0.25 0.53 8.06 -2.91 -0.02 0.51 16 37 H 0.25 1.20 4.46 -2.91 -0.01 1.19 16 38 H 0.05 1.75 8.00 -2.39 -0.02 1.73 16 39 H 0.06 1.83 7.95 -2.38 -0.02 1.81 16 Total: -1.00 -81.29 325.57 3.43 -77.85 By element: Atomic # 1 Polarization: 18.31 SS G_CDS: 0.35 Total: 18.66 kcal Atomic # 6 Polarization: -7.57 SS G_CDS: 5.43 Total: -2.14 kcal Atomic # 7 Polarization: -113.55 SS G_CDS: -4.35 Total: -117.91 kcal Atomic # 8 Polarization: -25.71 SS G_CDS: -0.02 Total: -25.74 kcal Atomic # 14 Polarization: 47.24 SS G_CDS: 2.03 Total: 49.26 kcal Total: -81.29 3.43 -77.85 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700050087.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.591 kcal (2) G-P(sol) polarization free energy of solvation -81.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.853 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds