Wall clock time and date at job start Tue Mar 31 2020 00:19:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86799 * 119.99975 * 2 1 4 4 H 1.48496 * 109.47396 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47087 * 300.00306 * 3 2 1 6 6 H 1.48500 * 109.47027 * 59.99781 * 3 2 1 7 7 C 1.38816 * 120.00257 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99801 * 180.02562 * 7 2 1 9 9 N 1.36933 * 119.99797 * 359.97438 * 7 2 1 10 10 C 1.46504 * 119.99807 * 173.77019 * 9 7 2 11 11 C 1.52997 * 112.85065 * 294.87074 * 10 9 7 12 12 N 1.46506 * 109.46915 * 292.09836 * 11 10 9 13 13 C 1.34774 * 119.99838 * 180.19347 * 12 11 10 14 14 O 1.21287 * 120.00155 * 0.02562 * 13 12 11 15 15 C 1.50703 * 120.00107 * 180.02562 * 13 12 11 16 16 C 1.50698 * 109.47570 * 180.02562 * 15 13 12 17 17 C 1.34515 * 125.78955 * 89.99613 * 16 15 13 18 18 C 1.41385 * 106.83972 * 179.79739 * 17 16 15 19 19 C 1.34508 * 106.83886 * 0.36989 * 18 17 16 20 20 O 1.34297 * 108.42301 * 359.62977 * 19 18 17 21 21 C 1.53773 * 113.68982 * 66.13749 * 10 9 7 22 22 C 1.53773 * 87.08398 * 89.12550 * 21 10 9 23 23 C 1.53781 * 113.61397 * 163.67277 * 10 9 7 24 24 H 0.96994 * 120.00454 * 359.97438 * 1 2 3 25 25 H 0.97000 * 119.99939 * 353.77770 * 9 7 2 26 26 H 1.08999 * 109.47402 * 172.10464 * 11 10 9 27 27 H 1.08997 * 109.47423 * 52.09920 * 11 10 9 28 28 H 0.96998 * 120.00308 * 0.20333 * 12 11 10 29 29 H 1.09002 * 109.46852 * 59.99828 * 15 13 12 30 30 H 1.09001 * 109.46939 * 300.00257 * 15 13 12 31 31 H 1.08008 * 126.57929 * 0.02562 * 17 16 15 32 32 H 1.08004 * 126.57503 * 180.23888 * 18 17 16 33 33 H 1.07998 * 125.78621 * 179.88831 * 19 18 17 34 34 H 1.09001 * 113.61896 * 203.67365 * 21 10 9 35 35 H 1.09007 * 113.61927 * 334.57649 * 21 10 9 36 36 H 1.09005 * 113.61977 * 270.88462 * 22 21 10 37 37 H 1.09004 * 113.61668 * 139.98146 * 22 21 10 38 38 H 1.09005 * 113.61390 * 25.34932 * 23 10 9 39 39 H 1.08995 * 113.61549 * 156.25348 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7101 1.3465 -0.0006 5 1 1.8913 2.3965 -1.2125 6 1 1.8914 2.3964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0904 -1.2021 -0.0001 9 7 1.3257 -2.3880 -0.0005 10 6 2.0517 -3.6530 -0.1388 11 6 2.7374 -3.7989 -1.4987 12 7 1.7216 -3.9325 -2.5459 13 6 2.0954 -4.0783 -3.8326 14 8 3.2727 -4.0994 -4.1234 15 6 1.0505 -4.2151 -4.9099 16 6 1.7259 -4.3644 -6.2488 17 6 2.0900 -5.5260 -6.8211 18 6 2.6802 -5.2027 -8.0645 19 6 2.6489 -3.8625 -8.1740 20 8 2.0670 -3.3602 -7.0727 21 6 2.9712 -3.9709 1.0520 22 6 1.7640 -4.6729 1.6958 23 6 1.2268 -4.8846 0.2705 24 1 -0.4850 0.8400 0.0004 25 1 0.3600 -2.3905 0.0909 26 1 3.3716 -4.6854 -1.4926 27 1 3.3474 -2.9171 -1.6945 28 1 0.7801 -3.9158 -2.3133 29 1 0.4188 -3.3269 -4.9182 30 1 0.4380 -5.0948 -4.7123 31 1 1.9538 -6.5159 -6.4112 32 1 3.0812 -5.8984 -8.7868 33 1 3.0240 -3.2880 -9.0080 34 1 3.7887 -4.6479 0.8039 35 1 3.3031 -3.0864 1.5958 36 1 1.1456 -4.0105 2.3016 37 1 2.0203 -5.6003 2.2081 38 1 0.1502 -4.7377 0.1833 39 1 1.5673 -5.8113 -0.1913 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700141297.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:19:04 Heat of formation + Delta-G solvation = 9.661414 kcal Electronic energy + Delta-G solvation = -21504.704152 eV Core-core repulsion = 18222.078850 eV Total energy + Delta-G solvation = -3282.625302 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.48505 -39.52283 -38.40825 -33.90158 -33.28264 -33.09134 -32.02625 -30.04845 -27.97661 -26.21387 -25.30933 -23.80807 -21.88488 -21.69048 -20.77936 -19.90279 -18.28358 -17.42363 -17.10653 -16.95445 -15.66769 -15.58289 -15.31949 -14.89605 -14.38356 -14.19716 -13.94256 -13.32134 -13.18641 -13.00867 -12.76879 -12.66041 -12.56796 -12.06842 -11.81333 -11.57906 -11.25053 -11.03121 -10.86847 -10.37901 -10.23186 -10.11292 -9.85089 -9.75648 -9.62497 -9.47625 -8.91219 -8.51913 -8.38997 -7.06266 -5.84935 -3.14569 1.77941 2.65726 2.94820 3.03922 3.40214 3.47832 3.48739 3.72446 4.52488 4.61712 5.01801 5.06720 5.10125 5.16533 5.24854 5.28294 5.32248 5.37135 5.42652 5.52426 5.76467 5.83337 5.94561 6.02504 6.10487 6.15331 6.17689 6.30276 6.37362 6.52586 6.55547 6.69758 6.88202 6.95478 7.04386 7.20410 7.68952 7.94081 8.34025 8.60260 9.45584 9.98740 10.34037 11.37179 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.015723 B = 0.004797 C = 0.003961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1780.348598 B = 5835.181239 C = 7067.437522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.008 4.008 3 Si 0.904 3.096 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.292 1.292 7 C -0.236 4.236 8 H 0.071 0.929 9 N -0.699 5.699 10 C 0.173 3.827 11 C 0.121 3.879 12 N -0.704 5.704 13 C 0.510 3.490 14 O -0.543 6.543 15 C -0.065 4.065 16 C 0.017 3.983 17 C -0.203 4.203 18 C -0.215 4.215 19 C -0.042 4.042 20 O -0.171 6.171 21 C -0.151 4.151 22 C -0.128 4.128 23 C -0.144 4.144 24 H 0.255 0.745 25 H 0.386 0.614 26 H 0.054 0.946 27 H 0.068 0.932 28 H 0.401 0.599 29 H 0.113 0.887 30 H 0.121 0.879 31 H 0.145 0.855 32 H 0.146 0.854 33 H 0.200 0.800 34 H 0.068 0.932 35 H 0.074 0.926 36 H 0.081 0.919 37 H 0.054 0.946 38 H 0.065 0.935 39 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.416 -12.409 -8.990 15.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.204 4.204 3 Si 0.735 3.265 4 H -0.205 1.205 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.367 4.367 8 H 0.089 0.911 9 N -0.340 5.340 10 C 0.080 3.920 11 C -0.005 4.005 12 N -0.353 5.353 13 C 0.295 3.705 14 O -0.421 6.421 15 C -0.105 4.105 16 C -0.034 4.034 17 C -0.222 4.222 18 C -0.234 4.234 19 C -0.110 4.110 20 O -0.066 6.066 21 C -0.191 4.191 22 C -0.166 4.166 23 C -0.182 4.182 24 H 0.065 0.935 25 H 0.221 0.779 26 H 0.072 0.928 27 H 0.087 0.913 28 H 0.235 0.765 29 H 0.131 0.869 30 H 0.139 0.861 31 H 0.163 0.837 32 H 0.163 0.837 33 H 0.217 0.783 34 H 0.087 0.913 35 H 0.093 0.907 36 H 0.100 0.900 37 H 0.073 0.927 38 H 0.084 0.916 39 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 1.320 -11.946 -9.124 15.089 hybrid contribution -0.167 0.880 -0.014 0.896 sum 1.153 -11.066 -9.138 14.398 Atomic orbital electron populations 1.69654 1.05069 1.25658 1.57497 1.24713 0.95461 0.97622 1.02599 0.86169 0.79009 0.84193 0.77158 1.20479 1.21852 1.21873 1.19155 0.91128 0.83630 1.42747 0.91080 1.42063 1.06102 0.99048 1.86773 1.20820 0.93038 0.87447 0.90685 1.21865 0.90485 1.00579 0.87592 1.45717 1.11012 1.72640 1.05941 1.20233 0.89674 0.77158 0.83471 1.90708 1.18660 1.50494 1.82259 1.20138 0.97316 1.06375 0.86689 1.21574 1.03029 0.85757 0.93049 1.21475 1.05539 0.98624 0.96601 1.21757 1.06715 0.95640 0.99304 1.23957 1.02134 0.94364 0.90566 1.84013 1.60055 1.36390 1.26176 1.23311 0.96379 1.00378 0.99049 1.22633 0.98521 0.99529 0.95910 1.23144 0.99884 0.97817 0.97364 0.93535 0.77919 0.92761 0.91319 0.76459 0.86908 0.86132 0.83719 0.83668 0.78317 0.91321 0.90731 0.90033 0.92743 0.91630 0.90439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -26.73 13.07 55.49 0.73 -26.01 16 2 C -0.01 -0.21 5.50 -17.43 -0.10 -0.31 16 3 Si 0.90 22.14 29.55 -169.99 -5.02 17.12 16 4 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 5 H -0.29 -7.27 7.11 56.52 0.40 -6.86 16 6 H -0.29 -7.18 7.11 56.52 0.40 -6.77 16 7 C -0.24 -6.15 9.05 -15.06 -0.14 -6.29 16 8 H 0.07 1.87 7.83 -52.48 -0.41 1.46 16 9 N -0.70 -15.78 5.19 -46.48 -0.24 -16.02 16 10 C 0.17 3.12 0.80 -131.01 -0.11 3.02 16 11 C 0.12 2.20 5.08 -4.04 -0.02 2.18 16 12 N -0.70 -11.51 5.42 -60.29 -0.33 -11.84 16 13 C 0.51 8.59 7.82 -10.99 -0.09 8.51 16 14 O -0.54 -11.41 16.03 5.55 0.09 -11.32 16 15 C -0.07 -0.84 6.23 -29.03 -0.18 -1.02 16 16 C 0.02 0.24 5.81 -35.63 -0.21 0.04 16 17 C -0.20 -2.68 10.81 -39.70 -0.43 -3.11 16 18 C -0.21 -2.58 10.91 -39.70 -0.43 -3.01 16 19 C -0.04 -0.52 12.09 29.41 0.36 -0.16 16 20 O -0.17 -2.62 10.65 5.73 0.06 -2.56 16 21 C -0.15 -2.54 7.28 -25.93 -0.19 -2.73 16 22 C -0.13 -1.94 7.99 -25.92 -0.21 -2.15 16 23 C -0.14 -2.12 7.04 -25.92 -0.18 -2.30 16 24 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 25 H 0.39 9.26 7.87 -40.82 -0.32 8.94 16 26 H 0.05 0.93 8.01 -51.93 -0.42 0.51 16 27 H 0.07 1.49 7.80 -51.93 -0.41 1.08 16 28 H 0.40 5.91 8.30 -40.82 -0.34 5.57 16 29 H 0.11 1.33 8.14 -51.93 -0.42 0.91 16 30 H 0.12 1.09 8.14 -51.93 -0.42 0.67 16 31 H 0.14 1.62 8.06 -52.48 -0.42 1.19 16 32 H 0.15 1.34 8.06 -52.48 -0.42 0.91 16 33 H 0.20 1.60 8.06 -52.49 -0.42 1.17 16 34 H 0.07 1.03 8.01 -51.93 -0.42 0.61 16 35 H 0.07 1.41 7.87 -51.92 -0.41 1.01 16 36 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 37 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 38 H 0.06 0.95 8.09 -51.93 -0.42 0.53 16 39 H 0.08 1.01 8.10 -51.93 -0.42 0.59 16 LS Contribution 334.60 15.07 5.04 5.04 Total: -1.00 -32.45 334.60 -7.24 -39.70 By element: Atomic # 1 Polarization: 18.89 SS G_CDS: -5.65 Total: 13.24 kcal Atomic # 6 Polarization: -5.43 SS G_CDS: -1.92 Total: -7.35 kcal Atomic # 7 Polarization: -54.02 SS G_CDS: 0.16 Total: -53.86 kcal Atomic # 8 Polarization: -14.03 SS G_CDS: 0.15 Total: -13.88 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.12 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -32.45 -7.24 -39.70 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700141297.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.359 kcal (2) G-P(sol) polarization free energy of solvation -32.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.697 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds