Wall clock time and date at job start Tue Mar 31 2020 00:19:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86799 * 119.99975 * 2 1 4 4 H 1.48496 * 109.47396 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47087 * 300.00306 * 3 2 1 6 6 H 1.48500 * 109.47027 * 59.99781 * 3 2 1 7 7 C 1.38816 * 120.00257 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99801 * 180.02562 * 7 2 1 9 9 N 1.36933 * 119.99797 * 359.97438 * 7 2 1 10 10 C 1.46504 * 119.99807 * 173.77019 * 9 7 2 11 11 C 1.52997 * 112.85065 * 294.87074 * 10 9 7 12 12 N 1.46506 * 109.46915 * 292.09836 * 11 10 9 13 13 C 1.34774 * 119.99838 * 180.19347 * 12 11 10 14 14 O 1.21287 * 120.00155 * 0.02562 * 13 12 11 15 15 C 1.50703 * 120.00107 * 180.02562 * 13 12 11 16 16 C 1.50698 * 109.47570 * 180.02562 * 15 13 12 17 17 C 1.34515 * 125.78955 * 89.99613 * 16 15 13 18 18 C 1.41385 * 106.83972 * 179.79739 * 17 16 15 19 19 C 1.34508 * 106.83886 * 0.36989 * 18 17 16 20 20 O 1.34297 * 108.42301 * 359.62977 * 19 18 17 21 21 C 1.53773 * 113.68982 * 66.13749 * 10 9 7 22 22 C 1.53773 * 87.08398 * 89.12550 * 21 10 9 23 23 C 1.53781 * 113.61397 * 163.67277 * 10 9 7 24 24 H 0.96994 * 120.00454 * 359.97438 * 1 2 3 25 25 H 0.97000 * 119.99939 * 353.77770 * 9 7 2 26 26 H 1.08999 * 109.47402 * 172.10464 * 11 10 9 27 27 H 1.08997 * 109.47423 * 52.09920 * 11 10 9 28 28 H 0.96998 * 120.00308 * 0.20333 * 12 11 10 29 29 H 1.09002 * 109.46852 * 59.99828 * 15 13 12 30 30 H 1.09001 * 109.46939 * 300.00257 * 15 13 12 31 31 H 1.08008 * 126.57929 * 0.02562 * 17 16 15 32 32 H 1.08004 * 126.57503 * 180.23888 * 18 17 16 33 33 H 1.07998 * 125.78621 * 179.88831 * 19 18 17 34 34 H 1.09001 * 113.61896 * 203.67365 * 21 10 9 35 35 H 1.09007 * 113.61927 * 334.57649 * 21 10 9 36 36 H 1.09005 * 113.61977 * 270.88462 * 22 21 10 37 37 H 1.09004 * 113.61668 * 139.98146 * 22 21 10 38 38 H 1.09005 * 113.61390 * 25.34932 * 23 10 9 39 39 H 1.08995 * 113.61549 * 156.25348 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7101 1.3465 -0.0006 5 1 1.8913 2.3965 -1.2125 6 1 1.8914 2.3964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0904 -1.2021 -0.0001 9 7 1.3257 -2.3880 -0.0005 10 6 2.0517 -3.6530 -0.1388 11 6 2.7374 -3.7989 -1.4987 12 7 1.7216 -3.9325 -2.5459 13 6 2.0954 -4.0783 -3.8326 14 8 3.2727 -4.0994 -4.1234 15 6 1.0505 -4.2151 -4.9099 16 6 1.7259 -4.3644 -6.2488 17 6 2.0900 -5.5260 -6.8211 18 6 2.6802 -5.2027 -8.0645 19 6 2.6489 -3.8625 -8.1740 20 8 2.0670 -3.3602 -7.0727 21 6 2.9712 -3.9709 1.0520 22 6 1.7640 -4.6729 1.6958 23 6 1.2268 -4.8846 0.2705 24 1 -0.4850 0.8400 0.0004 25 1 0.3600 -2.3905 0.0909 26 1 3.3716 -4.6854 -1.4926 27 1 3.3474 -2.9171 -1.6945 28 1 0.7801 -3.9158 -2.3133 29 1 0.4188 -3.3269 -4.9182 30 1 0.4380 -5.0948 -4.7123 31 1 1.9538 -6.5159 -6.4112 32 1 3.0812 -5.8984 -8.7868 33 1 3.0240 -3.2880 -9.0080 34 1 3.7887 -4.6479 0.8039 35 1 3.3031 -3.0864 1.5958 36 1 1.1456 -4.0105 2.3016 37 1 2.0203 -5.6003 2.2081 38 1 0.1502 -4.7377 0.1833 39 1 1.5673 -5.8113 -0.1913 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700141297.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:19:04 Heat of formation + Delta-G solvation = -12.615351 kcal Electronic energy + Delta-G solvation = -21505.670145 eV Core-core repulsion = 18222.078850 eV Total energy + Delta-G solvation = -3283.591295 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -43.46855 -40.91613 -39.80202 -35.31909 -35.19650 -34.10866 -33.05142 -31.90197 -29.27016 -27.41729 -26.71282 -25.64229 -23.23269 -22.65796 -21.96338 -21.08342 -19.73122 -19.13019 -18.46509 -18.12849 -17.05870 -16.73923 -16.61618 -16.37300 -15.90328 -15.61778 -15.22988 -15.07587 -14.61836 -14.26307 -14.01165 -13.70476 -13.52723 -13.47148 -13.07124 -12.97693 -12.93966 -12.65308 -12.54098 -12.14934 -11.94128 -11.59639 -11.47699 -11.10948 -10.88700 -10.81664 -10.72851 -9.95854 -9.37336 -8.97856 -7.95040 -5.21113 0.78199 1.42683 1.45829 1.52844 1.64887 1.71715 2.08844 2.48605 2.54842 3.37531 3.64518 3.75577 3.82654 3.94738 4.03149 4.12345 4.16795 4.17682 4.25108 4.39012 4.47571 4.66286 4.84775 4.90508 4.93496 4.94557 5.02473 5.03272 5.15136 5.23097 5.32054 5.43656 5.52020 5.64125 5.65737 5.72200 6.23744 6.30135 6.63694 7.29590 7.36567 8.10544 8.34512 9.27518 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.015723 B = 0.004797 C = 0.003961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1780.348598 B = 5835.181239 C = 7067.437522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.960 5.960 2 C -0.063 4.063 3 Si 0.953 3.047 4 H -0.275 1.275 5 H -0.298 1.298 6 H -0.292 1.292 7 C -0.222 4.222 8 H 0.064 0.936 9 N -0.704 5.704 10 C 0.157 3.843 11 C 0.130 3.870 12 N -0.698 5.698 13 C 0.507 3.493 14 O -0.590 6.590 15 C -0.056 4.056 16 C -0.017 4.017 17 C -0.207 4.207 18 C -0.225 4.225 19 C -0.050 4.050 20 O -0.201 6.201 21 C -0.152 4.152 22 C -0.121 4.121 23 C -0.124 4.124 24 H 0.249 0.751 25 H 0.378 0.622 26 H 0.069 0.931 27 H 0.025 0.975 28 H 0.411 0.589 29 H 0.121 0.879 30 H 0.162 0.838 31 H 0.163 0.837 32 H 0.172 0.828 33 H 0.233 0.767 34 H 0.093 0.907 35 H 0.045 0.955 36 H 0.061 0.939 37 H 0.085 0.915 38 H 0.070 0.930 39 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.368 -14.534 -9.574 17.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.611 5.611 2 C -0.256 4.256 3 Si 0.784 3.216 4 H -0.200 1.200 5 H -0.226 1.226 6 H -0.219 1.219 7 C -0.354 4.354 8 H 0.082 0.918 9 N -0.344 5.344 10 C 0.066 3.934 11 C 0.003 3.997 12 N -0.348 5.348 13 C 0.294 3.706 14 O -0.471 6.471 15 C -0.095 4.095 16 C -0.067 4.067 17 C -0.226 4.226 18 C -0.243 4.243 19 C -0.117 4.117 20 O -0.097 6.097 21 C -0.192 4.192 22 C -0.158 4.158 23 C -0.162 4.162 24 H 0.058 0.942 25 H 0.212 0.788 26 H 0.087 0.913 27 H 0.044 0.956 28 H 0.247 0.753 29 H 0.139 0.861 30 H 0.180 0.820 31 H 0.180 0.820 32 H 0.190 0.810 33 H 0.250 0.750 34 H 0.111 0.889 35 H 0.064 0.936 36 H 0.079 0.921 37 H 0.104 0.896 38 H 0.089 0.911 39 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 1.277 -14.108 -9.696 17.167 hybrid contribution -0.054 1.456 0.127 1.463 sum 1.223 -12.652 -9.569 15.911 Atomic orbital electron populations 1.69755 1.05953 1.25640 1.59719 1.25272 0.96166 1.00048 1.04136 0.85370 0.78242 0.81408 0.76570 1.20007 1.22554 1.21944 1.19324 0.90937 0.85062 1.40127 0.91833 1.42091 1.05786 0.99808 1.86670 1.21124 0.94332 0.87104 0.90845 1.21658 0.90685 0.99270 0.88059 1.45689 1.11144 1.72182 1.05752 1.20963 0.89912 0.75720 0.84039 1.90679 1.20891 1.52572 1.82933 1.20204 0.96096 1.08653 0.84572 1.21958 1.04695 0.86189 0.93906 1.21872 1.04646 0.99090 0.96984 1.22174 1.06516 0.96152 0.99498 1.24771 1.01170 0.95224 0.90493 1.83992 1.60894 1.37528 1.27334 1.23344 0.97633 1.00051 0.98128 1.22561 0.96941 1.00159 0.96176 1.23096 0.99723 0.96817 0.96562 0.94155 0.78807 0.91258 0.95617 0.75330 0.86129 0.82031 0.81953 0.81024 0.75031 0.88899 0.93622 0.92056 0.89629 0.91133 0.87552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -56.00 13.07 21.65 0.28 -55.72 16 2 C -0.06 -3.53 5.50 84.86 0.47 -3.06 16 3 Si 0.95 46.31 29.55 68.60 2.03 48.34 16 4 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 5 H -0.30 -14.68 7.11 99.48 0.71 -13.97 16 6 H -0.29 -14.11 7.11 99.48 0.71 -13.40 16 7 C -0.22 -11.78 9.05 84.04 0.76 -11.02 16 8 H 0.06 3.42 7.83 -2.91 -0.02 3.39 16 9 N -0.70 -31.85 5.19 -300.97 -1.56 -33.41 16 10 C 0.16 5.50 0.80 4.13 0.00 5.51 16 11 C 0.13 4.65 5.08 86.38 0.44 5.09 16 12 N -0.70 -22.12 5.42 -463.05 -2.51 -24.63 16 13 C 0.51 16.71 7.82 87.66 0.69 17.39 16 14 O -0.59 -24.86 16.03 -3.05 -0.05 -24.91 16 15 C -0.06 -1.35 6.23 29.10 0.18 -1.17 16 16 C -0.02 -0.49 5.81 24.83 0.14 -0.35 16 17 C -0.21 -5.12 10.81 22.19 0.24 -4.88 16 18 C -0.22 -4.96 10.91 22.19 0.24 -4.72 16 19 C -0.05 -1.14 12.09 66.97 0.81 -0.33 16 20 O -0.20 -6.09 10.65 -2.41 -0.03 -6.11 16 21 C -0.15 -4.89 7.28 31.12 0.23 -4.66 16 22 C -0.12 -3.35 7.99 31.12 0.25 -3.10 16 23 C -0.12 -3.28 7.04 31.12 0.22 -3.06 16 24 H 0.25 14.30 8.31 -92.71 -0.77 13.52 16 25 H 0.38 18.22 7.87 -92.71 -0.73 17.49 16 26 H 0.07 2.27 8.01 -2.39 -0.02 2.25 16 27 H 0.03 1.13 7.80 -2.39 -0.02 1.11 16 28 H 0.41 11.45 8.30 -92.71 -0.77 10.68 16 29 H 0.12 2.70 8.14 -2.39 -0.02 2.68 16 30 H 0.16 2.43 8.14 -2.39 -0.02 2.41 16 31 H 0.16 3.24 8.06 -2.91 -0.02 3.22 16 32 H 0.17 2.69 8.06 -2.91 -0.02 2.67 16 33 H 0.23 3.25 8.06 -2.91 -0.02 3.23 16 34 H 0.09 2.54 8.01 -2.39 -0.02 2.52 16 35 H 0.04 1.73 7.87 -2.38 -0.02 1.71 16 36 H 0.06 1.96 8.14 -2.38 -0.02 1.94 16 37 H 0.09 1.88 8.14 -2.38 -0.02 1.86 16 38 H 0.07 1.84 8.09 -2.38 -0.02 1.82 16 39 H 0.11 2.27 8.10 -2.39 -0.02 2.25 16 Total: -1.00 -72.07 334.60 2.40 -69.68 By element: Atomic # 1 Polarization: 35.56 SS G_CDS: -0.43 Total: 35.12 kcal Atomic # 6 Polarization: -13.03 SS G_CDS: 4.67 Total: -8.36 kcal Atomic # 7 Polarization: -109.96 SS G_CDS: -3.79 Total: -113.75 kcal Atomic # 8 Polarization: -30.95 SS G_CDS: -0.07 Total: -31.03 kcal Atomic # 14 Polarization: 46.31 SS G_CDS: 2.03 Total: 48.34 kcal Total: -72.07 2.40 -69.68 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700141297.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.063 kcal (2) G-P(sol) polarization free energy of solvation -72.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.679 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds