Wall clock time and date at job start Tue Mar 31 2020 00:19:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86796 * 119.99839 * 2 1 4 4 H 1.48499 * 109.46921 * 271.94545 * 3 2 1 5 5 H 1.48493 * 109.47128 * 31.95062 * 3 2 1 6 6 H 1.48507 * 109.46652 * 151.95119 * 3 2 1 7 7 C 1.38816 * 119.99602 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00158 * 336.95385 * 7 2 1 9 9 N 1.36940 * 119.99512 * 156.95181 * 7 2 1 10 10 C 1.46501 * 120.00248 * 320.68034 * 9 7 2 11 11 C 1.53005 * 109.46967 * 270.27662 * 10 9 7 12 12 N 1.46501 * 109.46967 * 180.02562 * 11 10 9 13 13 C 1.34778 * 119.99930 * 180.02562 * 12 11 10 14 14 O 1.21278 * 119.99807 * 359.97438 * 13 12 11 15 15 C 1.50697 * 119.99926 * 179.97438 * 13 12 11 16 16 C 1.50700 * 109.47080 * 179.97438 * 15 13 12 17 17 C 1.34518 * 125.78466 * 89.71563 * 16 15 13 18 18 C 1.41389 * 106.83578 * 179.88814 * 17 16 15 19 19 C 1.34512 * 106.84152 * 0.37478 * 18 17 16 20 20 O 1.34293 * 125.79287 * 270.02595 * 16 15 13 21 21 C 1.46496 * 119.99903 * 140.95274 * 9 7 2 22 22 C 1.53007 * 117.50033 * 3.74764 * 21 9 7 23 23 C 1.53001 * 117.50384 * 295.12444 * 21 9 7 24 24 H 0.96991 * 119.99539 * 0.02562 * 1 2 3 25 25 H 1.09003 * 109.47004 * 30.27177 * 10 9 7 26 26 H 1.08996 * 109.47415 * 150.27209 * 10 9 7 27 27 H 1.09003 * 109.46862 * 299.99601 * 11 10 9 28 28 H 1.08993 * 109.46936 * 59.99712 * 11 10 9 29 29 H 0.96999 * 119.99962 * 359.97438 * 12 11 10 30 30 H 1.08993 * 109.47308 * 300.00020 * 15 13 12 31 31 H 1.09008 * 109.47029 * 59.99769 * 15 13 12 32 32 H 1.07992 * 126.57997 * 0.02756 * 17 16 15 33 33 H 1.07997 * 126.57721 * 180.15957 * 18 17 16 34 34 H 1.08003 * 125.78808 * 179.74962 * 19 18 17 35 35 H 1.08997 * 115.55099 * 149.44703 * 21 9 7 36 36 H 1.09000 * 117.49568 * 359.97438 * 22 21 9 37 37 H 1.08994 * 117.50106 * 145.01875 * 22 21 9 38 38 H 1.09000 * 117.50051 * 214.98179 * 23 21 9 39 39 H 1.09006 * 117.49510 * 359.97438 * 23 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4565 2.0701 -1.3993 5 1 1.4689 2.6403 0.7409 6 1 3.5678 1.4285 0.6584 7 6 2.0103 -1.2022 0.0005 8 1 1.5349 -2.1000 0.3671 9 7 3.2977 -1.2497 -0.4638 10 6 3.6799 -0.4710 -1.6443 11 6 3.4596 -1.3121 -2.9033 12 7 3.8424 -0.5336 -4.0839 13 6 3.7319 -1.0752 -5.3131 14 8 3.3161 -2.2072 -5.4418 15 6 4.1251 -0.2742 -6.5275 16 6 3.9083 -1.1027 -7.7675 17 6 2.7743 -1.1565 -8.4892 18 6 3.0123 -2.0490 -9.5597 19 6 4.2745 -2.4934 -9.4234 20 8 4.8123 -1.9168 -8.3361 21 6 4.2913 -2.0840 0.2165 22 6 3.8093 -2.9455 1.3855 23 6 4.6675 -1.7070 1.6509 24 1 -0.4849 0.8400 -0.0004 25 1 3.0694 0.4304 -1.6983 26 1 4.7315 -0.1938 -1.5719 27 1 4.0701 -2.2135 -2.8494 28 1 2.4080 -1.5893 -2.9757 29 1 4.1746 0.3719 -3.9809 30 1 3.5150 0.6274 -6.5812 31 1 5.1769 0.0027 -6.4552 32 1 1.8589 -0.6193 -8.2904 33 1 2.3134 -2.3240 -10.3357 34 1 4.7711 -3.1952 -10.0772 35 1 5.0771 -2.4919 -0.4191 36 1 2.7529 -2.8913 1.6486 37 1 4.2780 -3.9205 1.5189 38 1 5.7008 -1.8671 1.9589 39 1 4.1759 -0.8379 2.0882 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714674728.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:19:26 Heat of formation + Delta-G solvation = 33.286745 kcal Electronic energy + Delta-G solvation = -21131.857369 eV Core-core repulsion = 17850.256537 eV Total energy + Delta-G solvation = -3281.600831 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.58013 -39.36658 -37.37625 -34.96178 -33.29337 -33.15517 -32.19482 -31.32080 -28.34033 -26.67346 -24.26666 -22.48143 -21.78614 -21.45693 -20.96881 -20.11435 -19.66433 -17.56920 -17.21904 -16.28979 -15.87452 -15.73935 -15.58824 -15.23649 -15.08937 -14.24064 -13.86688 -13.52155 -13.35856 -12.85297 -12.78500 -12.72828 -12.50731 -12.28299 -11.91726 -11.89654 -11.57939 -10.92047 -10.76844 -10.46775 -10.09370 -9.96982 -9.92943 -9.75970 -9.55754 -9.46476 -8.74220 -8.56134 -8.48944 -6.83726 -6.11143 -3.55352 1.67200 2.57836 2.78136 2.92193 3.16654 3.37341 3.43220 3.50341 4.40275 4.49423 4.71883 4.82847 4.91099 4.98503 5.02476 5.15112 5.18294 5.24905 5.71241 5.73097 5.75752 5.77929 5.88891 5.95309 6.03366 6.05267 6.14460 6.39667 6.41966 6.46817 6.56814 6.65887 6.80999 6.90174 7.08249 7.09668 7.71086 7.94400 8.31707 8.42136 8.86989 9.58177 9.97261 11.03377 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.022796 B = 0.003879 C = 0.003597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1227.986660 B = 7216.850172 C = 7781.511236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.042 3.958 3 Si 0.874 3.126 4 H -0.284 1.284 5 H -0.299 1.299 6 H -0.266 1.266 7 C -0.275 4.275 8 H 0.084 0.916 9 N -0.568 5.568 10 C 0.129 3.871 11 C 0.101 3.899 12 N -0.725 5.725 13 C 0.508 3.492 14 O -0.531 6.531 15 C -0.063 4.063 16 C 0.009 3.991 17 C -0.198 4.198 18 C -0.213 4.213 19 C -0.043 4.043 20 O -0.173 6.173 21 C 0.118 3.882 22 C -0.187 4.187 23 C -0.222 4.222 24 H 0.265 0.735 25 H 0.063 0.937 26 H 0.047 0.953 27 H 0.060 0.940 28 H 0.077 0.923 29 H 0.397 0.603 30 H 0.123 0.877 31 H 0.110 0.890 32 H 0.147 0.853 33 H 0.147 0.853 34 H 0.201 0.799 35 H 0.092 0.908 36 H 0.103 0.897 37 H 0.078 0.922 38 H 0.074 0.926 39 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.588 1.100 -13.936 17.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.160 4.160 3 Si 0.703 3.297 4 H -0.212 1.212 5 H -0.227 1.227 6 H -0.191 1.191 7 C -0.404 4.404 8 H 0.102 0.898 9 N -0.286 5.286 10 C 0.002 3.998 11 C -0.025 4.025 12 N -0.376 5.376 13 C 0.293 3.707 14 O -0.407 6.407 15 C -0.103 4.103 16 C -0.041 4.041 17 C -0.217 4.217 18 C -0.232 4.232 19 C -0.110 4.110 20 O -0.069 6.069 21 C 0.009 3.991 22 C -0.225 4.225 23 C -0.262 4.262 24 H 0.075 0.925 25 H 0.081 0.919 26 H 0.065 0.935 27 H 0.078 0.922 28 H 0.095 0.905 29 H 0.230 0.770 30 H 0.141 0.859 31 H 0.128 0.872 32 H 0.165 0.835 33 H 0.165 0.835 34 H 0.218 0.782 35 H 0.110 0.890 36 H 0.122 0.878 37 H 0.096 0.904 38 H 0.092 0.908 39 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 10.370 0.321 -13.876 17.326 hybrid contribution 0.237 1.368 0.020 1.388 sum 10.606 1.689 -13.857 17.531 Atomic orbital electron populations 1.69880 1.06042 1.26956 1.50143 1.25521 0.95052 0.97795 0.97625 0.87026 0.80862 0.84629 0.77140 1.21220 1.22715 1.19062 1.18740 0.86236 0.94672 1.40710 0.89848 1.43508 1.07362 1.52188 1.25571 1.21380 0.98205 0.94528 0.85641 1.22265 1.01666 0.95108 0.83420 1.46056 1.66744 1.18490 1.06331 1.20306 0.78711 0.87468 0.84216 1.90746 1.45075 1.18768 1.86143 1.20136 1.05348 0.97293 0.87533 1.21516 0.89074 0.96742 0.96792 1.21545 0.98808 1.03929 0.97403 1.21795 0.97297 1.02234 1.01872 1.23958 0.95028 1.01653 0.90380 1.83972 1.40631 1.47251 1.35074 1.21183 0.93982 0.97227 0.86664 1.23068 1.01157 0.93525 1.04757 1.23368 0.98388 0.99646 1.04838 0.92500 0.91908 0.93473 0.92167 0.90497 0.76981 0.85924 0.87188 0.83547 0.83541 0.78224 0.88983 0.87820 0.90389 0.90757 0.89259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.26 13.97 55.49 0.78 -25.48 16 2 C 0.04 1.15 5.28 -17.43 -0.09 1.06 16 3 Si 0.87 20.89 25.32 -169.99 -4.30 16.58 16 4 H -0.28 -6.37 6.52 56.52 0.37 -6.00 16 5 H -0.30 -7.37 7.11 56.52 0.40 -6.97 16 6 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 7 C -0.28 -7.35 8.93 -15.06 -0.13 -7.48 16 8 H 0.08 2.43 6.86 -52.49 -0.36 2.07 16 9 N -0.57 -12.84 2.37 -165.66 -0.39 -13.23 16 10 C 0.13 2.55 4.68 -4.04 -0.02 2.53 16 11 C 0.10 1.89 6.00 -4.04 -0.02 1.87 16 12 N -0.72 -10.85 5.56 -60.29 -0.33 -11.18 16 13 C 0.51 7.93 7.82 -10.99 -0.09 7.84 16 14 O -0.53 -10.88 16.03 5.56 0.09 -10.79 16 15 C -0.06 -0.69 6.23 -29.04 -0.18 -0.87 16 16 C 0.01 0.12 5.81 -35.62 -0.21 -0.08 16 17 C -0.20 -2.55 10.81 -39.70 -0.43 -2.98 16 18 C -0.21 -2.44 10.91 -39.70 -0.43 -2.87 16 19 C -0.04 -0.47 12.09 29.42 0.36 -0.11 16 20 O -0.17 -2.36 10.65 5.73 0.06 -2.29 16 21 C 0.12 2.31 6.57 -67.93 -0.45 1.87 16 22 C -0.19 -3.52 9.80 -26.73 -0.26 -3.79 16 23 C -0.22 -4.12 10.35 -26.73 -0.28 -4.40 16 24 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 25 H 0.06 1.35 3.46 -51.93 -0.18 1.17 16 26 H 0.05 0.81 8.07 -51.93 -0.42 0.39 16 27 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 28 H 0.08 1.72 8.14 -51.93 -0.42 1.30 16 29 H 0.40 4.60 8.47 -40.82 -0.35 4.25 16 30 H 0.12 0.99 8.14 -51.93 -0.42 0.57 16 31 H 0.11 0.91 8.14 -51.92 -0.42 0.49 16 32 H 0.15 1.68 8.06 -52.49 -0.42 1.26 16 33 H 0.15 1.31 8.06 -52.49 -0.42 0.89 16 34 H 0.20 1.36 8.06 -52.48 -0.42 0.93 16 35 H 0.09 1.60 8.14 -51.93 -0.42 1.18 16 36 H 0.10 2.21 6.45 -51.93 -0.33 1.87 16 37 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 38 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 39 H 0.09 1.86 8.14 -51.93 -0.42 1.44 16 LS Contribution 330.84 15.07 4.99 4.99 Total: -1.00 -33.66 330.84 -6.81 -40.48 By element: Atomic # 1 Polarization: 13.81 SS G_CDS: -5.46 Total: 8.35 kcal Atomic # 6 Polarization: -5.18 SS G_CDS: -2.23 Total: -7.41 kcal Atomic # 7 Polarization: -49.95 SS G_CDS: 0.05 Total: -49.90 kcal Atomic # 8 Polarization: -13.24 SS G_CDS: 0.15 Total: -13.09 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -4.30 Total: 16.58 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -33.66 -6.81 -40.48 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714674728.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.763 kcal (2) G-P(sol) polarization free energy of solvation -33.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.477 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds