Wall clock time and date at job start Tue Mar 31 2020 00:32:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86806 * 120.00032 * 2 1 4 4 H 1.48496 * 109.46875 * 270.00235 * 3 2 1 5 5 H 1.48498 * 109.47056 * 30.00041 * 3 2 1 6 6 H 1.48492 * 109.47020 * 150.00155 * 3 2 1 7 7 C 1.38812 * 120.00024 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00077 * 359.97438 * 7 2 1 9 9 N 1.36937 * 119.99868 * 179.97438 * 7 2 1 10 10 C 1.46504 * 119.99879 * 179.97438 * 9 7 2 11 11 C 1.53004 * 109.46972 * 179.97438 * 10 9 7 12 12 H 1.08997 * 109.47416 * 295.00306 * 11 10 9 13 13 N 1.46495 * 109.46938 * 55.00467 * 11 10 9 14 14 C 1.34785 * 119.99847 * 204.99750 * 13 11 10 15 15 O 1.21280 * 119.99805 * 0.02562 * 14 13 11 16 16 C 1.50700 * 119.99810 * 179.97438 * 14 13 11 17 17 C 1.50700 * 109.46699 * 180.02562 * 16 14 13 18 18 C 1.41385 * 126.58187 * 90.00677 * 17 16 14 19 19 C 1.34512 * 106.83926 * 180.25995 * 18 17 16 20 20 O 1.34305 * 108.42433 * 359.63135 * 19 18 17 21 21 C 1.34305 * 109.47225 * 0.37505 * 20 19 18 22 22 C 1.52993 * 109.46875 * 175.00059 * 11 10 9 23 23 C 1.53005 * 117.50207 * 248.74532 * 22 11 10 24 24 C 1.52996 * 117.49969 * 180.08839 * 22 11 10 25 25 H 0.96997 * 119.99619 * 359.97438 * 1 2 3 26 26 H 0.96997 * 119.99983 * 359.97438 * 9 7 2 27 27 H 1.08996 * 109.46898 * 60.00194 * 10 9 7 28 28 H 1.09000 * 109.47210 * 300.00186 * 10 9 7 29 29 H 0.97003 * 120.00676 * 24.99892 * 13 11 10 30 30 H 1.09005 * 109.47178 * 60.00305 * 16 14 13 31 31 H 1.09000 * 109.47367 * 300.00226 * 16 14 13 32 32 H 1.08002 * 126.57514 * 359.97438 * 18 17 16 33 33 H 1.07998 * 125.78467 * 179.77218 * 19 18 17 34 34 H 1.08000 * 125.78555 * 179.79179 * 21 20 19 35 35 H 1.09004 * 115.55257 * 34.41738 * 22 11 10 36 36 H 1.09002 * 117.49375 * 0.02562 * 23 22 11 37 37 H 1.09003 * 117.49381 * 145.01792 * 23 22 11 38 38 H 1.09006 * 117.50598 * 214.98246 * 24 22 11 39 39 H 1.09006 * 117.49741 * 0.02562 * 24 22 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 1.4704 -2.1374 -0.0005 9 7 3.3797 -1.2021 -0.0011 10 6 4.1122 -2.4709 -0.0011 11 6 5.6165 -2.1912 -0.0024 12 1 5.8936 -1.6982 -0.9341 13 7 5.9526 -1.3227 1.1285 14 6 7.0506 -0.5427 1.0760 15 8 7.7599 -0.5595 0.0924 16 6 7.3961 0.3512 2.2390 17 6 8.6593 1.1125 1.9295 18 6 8.7493 2.3739 1.2972 19 6 10.0575 2.6763 1.2157 20 8 10.7601 1.6745 1.7692 21 6 9.9175 0.7220 2.2011 22 6 6.3805 -3.5108 0.1233 23 6 7.1404 -3.7658 1.4266 24 6 7.9089 -3.4430 0.1428 25 1 -0.4849 0.8400 0.0004 26 1 3.8646 -0.3621 -0.0014 27 1 3.8486 -3.0426 -0.8908 28 1 3.8492 -3.0423 0.8891 29 1 5.3851 -1.3089 1.9150 30 1 7.5468 -0.2560 3.1317 31 1 6.5813 1.0545 2.4113 32 1 7.9260 2.9766 0.9432 33 1 10.4722 3.5738 0.7811 34 1 10.2019 -0.2009 2.6847 35 1 5.9210 -4.3687 -0.3675 36 1 7.0955 -2.9936 2.1947 37 1 7.1809 -4.7917 1.7930 38 1 8.4550 -4.2566 -0.3348 39 1 8.3700 -2.4583 0.0665 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716609741.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:32:53 Heat of formation + Delta-G solvation = 23.112808 kcal Electronic energy + Delta-G solvation = -21757.880556 eV Core-core repulsion = 18475.838550 eV Total energy + Delta-G solvation = -3282.042006 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.59764 -40.04825 -37.28756 -35.08577 -33.99355 -33.35254 -31.46214 -30.45543 -28.91043 -27.40386 -24.01904 -22.27724 -21.70859 -21.59988 -21.28662 -20.08914 -19.74175 -17.92631 -17.45275 -16.91024 -16.19081 -15.88633 -15.69026 -14.79739 -14.71911 -14.55972 -14.01317 -13.55198 -13.50207 -12.89675 -12.85544 -12.79989 -12.56453 -12.16961 -11.87165 -11.67392 -11.54615 -11.27960 -11.05139 -10.90637 -10.25905 -10.22623 -9.94485 -9.73959 -9.61694 -9.50339 -8.97651 -8.76759 -8.58403 -7.30414 -5.82079 -3.18326 1.71732 2.49060 2.77184 3.07669 3.31474 3.37045 3.41340 3.46770 3.99167 4.54074 4.66187 4.70002 4.75357 4.92207 5.03283 5.12214 5.12980 5.29997 5.41773 5.44321 5.47223 5.60095 5.66070 5.75095 5.82286 5.89239 5.94592 6.05980 6.09026 6.20704 6.38163 6.42167 6.44481 6.58101 6.81813 7.04302 7.71890 7.93433 8.36384 8.41709 9.15279 9.87375 10.06849 11.36133 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.015010 B = 0.005693 C = 0.004320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1864.978550 B = 4916.760390 C = 6480.268989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.007 3.993 3 Si 0.884 3.116 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.278 1.278 7 C -0.246 4.246 8 H 0.091 0.909 9 N -0.755 5.755 10 C 0.153 3.847 11 C 0.165 3.835 12 H 0.090 0.910 13 N -0.715 5.715 14 C 0.513 3.487 15 O -0.532 6.532 16 C -0.076 4.076 17 C -0.157 4.157 18 C -0.197 4.197 19 C -0.047 4.047 20 O -0.179 6.179 21 C -0.031 4.031 22 C -0.160 4.160 23 C -0.176 4.176 24 C -0.187 4.187 25 H 0.260 0.740 26 H 0.362 0.638 27 H 0.042 0.958 28 H 0.035 0.965 29 H 0.405 0.595 30 H 0.100 0.900 31 H 0.104 0.896 32 H 0.146 0.854 33 H 0.200 0.800 34 H 0.199 0.801 35 H 0.110 0.890 36 H 0.091 0.909 37 H 0.087 0.913 38 H 0.084 0.916 39 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.899 -0.809 6.326 20.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.189 4.189 3 Si 0.714 3.286 4 H -0.211 1.211 5 H -0.217 1.217 6 H -0.205 1.205 7 C -0.376 4.376 8 H 0.109 0.891 9 N -0.401 5.401 10 C 0.025 3.975 11 C 0.060 3.940 12 H 0.108 0.892 13 N -0.367 5.367 14 C 0.299 3.701 15 O -0.409 6.409 16 C -0.116 4.116 17 C -0.159 4.159 18 C -0.217 4.217 19 C -0.114 4.114 20 O -0.074 6.074 21 C -0.098 4.098 22 C -0.180 4.180 23 C -0.214 4.214 24 C -0.224 4.224 25 H 0.070 0.930 26 H 0.195 0.805 27 H 0.060 0.940 28 H 0.053 0.947 29 H 0.240 0.760 30 H 0.118 0.882 31 H 0.122 0.878 32 H 0.164 0.836 33 H 0.217 0.783 34 H 0.215 0.785 35 H 0.128 0.872 36 H 0.109 0.891 37 H 0.105 0.895 38 H 0.102 0.898 39 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 20.458 -0.915 5.631 21.238 hybrid contribution -0.149 1.187 0.268 1.226 sum 20.309 0.272 5.899 21.150 Atomic orbital electron populations 1.69699 1.05081 1.25864 1.57348 1.24659 0.95195 0.97134 1.01913 0.86565 0.79016 0.85072 0.77905 1.21108 1.21699 1.20478 1.19046 0.80494 0.94777 1.43290 0.89109 1.42690 1.04068 1.02096 1.91249 1.20891 0.87029 0.89808 0.99771 1.20789 0.95024 0.88220 0.89960 0.89192 1.46076 1.26801 1.42846 1.20949 1.20511 0.80776 0.80034 0.88751 1.90634 1.50378 1.66457 1.33479 1.20038 0.96033 0.98039 0.97464 1.19784 0.94346 0.96563 1.05158 1.21717 0.97301 0.97730 1.04906 1.23917 0.90853 0.93606 1.02995 1.84043 1.37504 1.26152 1.59727 1.23729 0.87866 0.94168 1.04071 1.22669 0.94008 0.99179 1.02102 1.22880 1.05190 1.01739 0.91554 1.23339 0.94055 1.04255 1.00757 0.93001 0.80456 0.93995 0.94747 0.76005 0.88167 0.87813 0.83647 0.78294 0.78455 0.87163 0.89086 0.89460 0.89755 0.86588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.92 13.97 55.49 0.78 -28.14 16 2 C 0.01 0.20 5.50 -17.43 -0.10 0.11 16 3 Si 0.88 21.94 27.74 -169.99 -4.71 17.23 16 4 H -0.28 -7.17 7.11 56.52 0.40 -6.77 16 5 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 6 H -0.28 -6.41 6.52 56.52 0.37 -6.04 16 7 C -0.25 -6.80 10.47 -15.06 -0.16 -6.96 16 8 H 0.09 2.68 8.06 -52.49 -0.42 2.26 16 9 N -0.75 -17.27 5.24 -59.91 -0.31 -17.58 16 10 C 0.15 2.79 5.80 -4.04 -0.02 2.76 16 11 C 0.16 2.57 2.59 -67.93 -0.18 2.40 16 12 H 0.09 1.61 7.58 -51.93 -0.39 1.21 16 13 N -0.72 -10.19 3.05 -53.81 -0.16 -10.35 16 14 C 0.51 7.43 6.66 -10.98 -0.07 7.35 16 15 O -0.53 -9.36 13.06 5.56 0.07 -9.29 16 16 C -0.08 -0.87 6.22 -29.03 -0.18 -1.05 16 17 C -0.16 -1.94 4.66 -104.74 -0.49 -2.43 16 18 C -0.20 -2.44 10.87 -39.70 -0.43 -2.87 16 19 C -0.05 -0.50 12.09 29.42 0.36 -0.15 16 20 O -0.18 -2.11 10.65 5.70 0.06 -2.05 16 21 C -0.03 -0.34 12.01 29.42 0.35 0.01 16 22 C -0.16 -2.13 5.70 -90.62 -0.52 -2.65 16 23 C -0.18 -2.08 9.74 -26.69 -0.26 -2.34 16 24 C -0.19 -2.45 9.82 -26.70 -0.26 -2.71 16 25 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 26 H 0.36 8.27 5.20 -40.82 -0.21 8.06 16 27 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.40 5.35 8.60 -40.82 -0.35 4.99 16 30 H 0.10 0.85 8.14 -51.93 -0.42 0.42 16 31 H 0.10 1.15 8.14 -51.93 -0.42 0.73 16 32 H 0.15 1.70 8.06 -52.49 -0.42 1.28 16 33 H 0.20 1.39 8.06 -52.49 -0.42 0.97 16 34 H 0.20 1.58 8.06 -52.49 -0.42 1.16 16 35 H 0.11 1.37 8.11 -51.93 -0.42 0.95 16 36 H 0.09 1.05 6.67 -51.93 -0.35 0.70 16 37 H 0.09 0.92 8.14 -51.93 -0.42 0.49 16 38 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 39 H 0.12 1.77 5.01 -51.93 -0.26 1.51 16 LS Contribution 327.15 15.07 4.93 4.93 Total: -1.00 -33.57 327.15 -6.69 -40.26 By element: Atomic # 1 Polarization: 18.89 SS G_CDS: -5.38 Total: 13.51 kcal Atomic # 6 Polarization: -6.57 SS G_CDS: -1.96 Total: -8.52 kcal Atomic # 7 Polarization: -56.37 SS G_CDS: 0.30 Total: -56.07 kcal Atomic # 8 Polarization: -11.47 SS G_CDS: 0.13 Total: -11.34 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -4.71 Total: 17.23 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -33.57 -6.69 -40.26 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716609741.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.372 kcal (2) G-P(sol) polarization free energy of solvation -33.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.260 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds