Wall clock time and date at job start Tue Mar 31 2020 00:32:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86806 * 120.00032 * 2 1 4 4 H 1.48496 * 109.46875 * 270.00235 * 3 2 1 5 5 H 1.48498 * 109.47056 * 30.00041 * 3 2 1 6 6 H 1.48492 * 109.47020 * 150.00155 * 3 2 1 7 7 C 1.38812 * 120.00024 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00077 * 359.97438 * 7 2 1 9 9 N 1.36937 * 119.99868 * 179.97438 * 7 2 1 10 10 C 1.46504 * 119.99879 * 179.97438 * 9 7 2 11 11 C 1.53004 * 109.46972 * 179.97438 * 10 9 7 12 12 H 1.08997 * 109.47416 * 295.00306 * 11 10 9 13 13 N 1.46495 * 109.46938 * 55.00467 * 11 10 9 14 14 C 1.34785 * 119.99847 * 204.99750 * 13 11 10 15 15 O 1.21280 * 119.99805 * 0.02562 * 14 13 11 16 16 C 1.50700 * 119.99810 * 179.97438 * 14 13 11 17 17 C 1.50700 * 109.46699 * 180.02562 * 16 14 13 18 18 C 1.41385 * 126.58187 * 90.00677 * 17 16 14 19 19 C 1.34512 * 106.83926 * 180.25995 * 18 17 16 20 20 O 1.34305 * 108.42433 * 359.63135 * 19 18 17 21 21 C 1.34305 * 109.47225 * 0.37505 * 20 19 18 22 22 C 1.52993 * 109.46875 * 175.00059 * 11 10 9 23 23 C 1.53005 * 117.50207 * 248.74532 * 22 11 10 24 24 C 1.52996 * 117.49969 * 180.08839 * 22 11 10 25 25 H 0.96997 * 119.99619 * 359.97438 * 1 2 3 26 26 H 0.96997 * 119.99983 * 359.97438 * 9 7 2 27 27 H 1.08996 * 109.46898 * 60.00194 * 10 9 7 28 28 H 1.09000 * 109.47210 * 300.00186 * 10 9 7 29 29 H 0.97003 * 120.00676 * 24.99892 * 13 11 10 30 30 H 1.09005 * 109.47178 * 60.00305 * 16 14 13 31 31 H 1.09000 * 109.47367 * 300.00226 * 16 14 13 32 32 H 1.08002 * 126.57514 * 359.97438 * 18 17 16 33 33 H 1.07998 * 125.78467 * 179.77218 * 19 18 17 34 34 H 1.08000 * 125.78555 * 179.79179 * 21 20 19 35 35 H 1.09004 * 115.55257 * 34.41738 * 22 11 10 36 36 H 1.09002 * 117.49375 * 0.02562 * 23 22 11 37 37 H 1.09003 * 117.49381 * 145.01792 * 23 22 11 38 38 H 1.09006 * 117.50598 * 214.98246 * 24 22 11 39 39 H 1.09006 * 117.49741 * 0.02562 * 24 22 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 1.4704 -2.1374 -0.0005 9 7 3.3797 -1.2021 -0.0011 10 6 4.1122 -2.4709 -0.0011 11 6 5.6165 -2.1912 -0.0024 12 1 5.8936 -1.6982 -0.9341 13 7 5.9526 -1.3227 1.1285 14 6 7.0506 -0.5427 1.0760 15 8 7.7599 -0.5595 0.0924 16 6 7.3961 0.3512 2.2390 17 6 8.6593 1.1125 1.9295 18 6 8.7493 2.3739 1.2972 19 6 10.0575 2.6763 1.2157 20 8 10.7601 1.6745 1.7692 21 6 9.9175 0.7220 2.2011 22 6 6.3805 -3.5108 0.1233 23 6 7.1404 -3.7658 1.4266 24 6 7.9089 -3.4430 0.1428 25 1 -0.4849 0.8400 0.0004 26 1 3.8646 -0.3621 -0.0014 27 1 3.8486 -3.0426 -0.8908 28 1 3.8492 -3.0423 0.8891 29 1 5.3851 -1.3089 1.9150 30 1 7.5468 -0.2560 3.1317 31 1 6.5813 1.0545 2.4113 32 1 7.9260 2.9766 0.9432 33 1 10.4722 3.5738 0.7811 34 1 10.2019 -0.2009 2.6847 35 1 5.9210 -4.3687 -0.3675 36 1 7.0955 -2.9936 2.1947 37 1 7.1809 -4.7917 1.7930 38 1 8.4550 -4.2566 -0.3348 39 1 8.3700 -2.4583 0.0665 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716609741.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:32:53 Heat of formation + Delta-G solvation = 0.855841 kcal Electronic energy + Delta-G solvation = -21758.845691 eV Core-core repulsion = 18475.838550 eV Total energy + Delta-G solvation = -3283.007141 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -43.43376 -41.19980 -38.45214 -36.68910 -34.91362 -34.77689 -33.34685 -31.43652 -30.26681 -28.44966 -25.76177 -23.39822 -23.01079 -22.57594 -22.43541 -21.06410 -20.87320 -19.81328 -18.39104 -18.02696 -17.34301 -17.02050 -16.72391 -16.51201 -15.78468 -15.56979 -15.50699 -14.88262 -14.77729 -14.69449 -13.98774 -13.79072 -13.67447 -13.44353 -13.35095 -12.93320 -12.79286 -12.68464 -12.50697 -12.18014 -12.08887 -11.84278 -11.29624 -11.05959 -10.97620 -10.79570 -10.49999 -9.95721 -9.41534 -9.32785 -8.04256 -5.37726 0.89461 1.33383 1.38196 1.44242 1.58934 1.67833 2.29536 2.40501 2.45405 2.96260 3.28237 3.46762 3.78320 3.88911 3.95155 4.03910 4.06980 4.11963 4.18048 4.40210 4.46233 4.54096 4.61093 4.64901 4.79931 4.85921 4.89479 5.06967 5.11102 5.12908 5.27792 5.31379 5.40838 5.57314 5.58978 5.75217 6.19235 6.20749 6.61548 7.05522 7.31397 7.80591 7.99411 9.17090 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.015010 B = 0.005693 C = 0.004320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1864.978550 B = 4916.760390 C = 6480.268989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.981 5.981 2 C -0.058 4.058 3 Si 0.949 3.051 4 H -0.290 1.290 5 H -0.293 1.293 6 H -0.250 1.250 7 C -0.232 4.232 8 H 0.062 0.938 9 N -0.755 5.755 10 C 0.153 3.847 11 C 0.177 3.823 12 H 0.065 0.935 13 N -0.712 5.712 14 C 0.512 3.488 15 O -0.566 6.566 16 C -0.069 4.069 17 C -0.179 4.179 18 C -0.229 4.229 19 C -0.043 4.043 20 O -0.188 6.188 21 C -0.033 4.033 22 C -0.170 4.170 23 C -0.158 4.158 24 C -0.189 4.189 25 H 0.258 0.742 26 H 0.364 0.636 27 H 0.040 0.960 28 H 0.046 0.954 29 H 0.412 0.588 30 H 0.134 0.866 31 H 0.108 0.892 32 H 0.144 0.856 33 H 0.232 0.768 34 H 0.226 0.774 35 H 0.120 0.880 36 H 0.096 0.904 37 H 0.106 0.894 38 H 0.097 0.903 39 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.121 -0.895 7.573 23.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.632 5.632 2 C -0.249 4.249 3 Si 0.777 3.223 4 H -0.217 1.217 5 H -0.220 1.220 6 H -0.174 1.174 7 C -0.362 4.362 8 H 0.080 0.920 9 N -0.401 5.401 10 C 0.027 3.973 11 C 0.072 3.928 12 H 0.083 0.917 13 N -0.364 5.364 14 C 0.300 3.700 15 O -0.445 6.445 16 C -0.109 4.109 17 C -0.181 4.181 18 C -0.248 4.248 19 C -0.110 4.110 20 O -0.084 6.084 21 C -0.100 4.100 22 C -0.190 4.190 23 C -0.195 4.195 24 C -0.226 4.226 25 H 0.067 0.933 26 H 0.198 0.802 27 H 0.058 0.942 28 H 0.064 0.936 29 H 0.248 0.752 30 H 0.152 0.848 31 H 0.126 0.874 32 H 0.162 0.838 33 H 0.248 0.752 34 H 0.242 0.758 35 H 0.138 0.862 36 H 0.114 0.886 37 H 0.125 0.875 38 H 0.115 0.885 39 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 22.723 -1.030 6.901 23.770 hybrid contribution -0.827 1.119 -0.166 1.401 sum 21.896 0.090 6.735 22.909 Atomic orbital electron populations 1.69867 1.07002 1.26607 1.59684 1.25403 0.95963 1.00837 1.02744 0.85510 0.78844 0.80323 0.77673 1.21656 1.21970 1.17427 1.19038 0.82499 0.93585 1.41125 0.91980 1.42667 1.02502 1.03939 1.91040 1.21014 0.88481 0.87872 0.99948 1.20465 0.93154 0.89565 0.89611 0.91731 1.46043 1.27014 1.42728 1.20652 1.21041 0.80074 0.79764 0.89107 1.90627 1.51407 1.67432 1.35016 1.20069 0.95841 0.97818 0.97174 1.20026 0.95178 0.96920 1.05995 1.21964 0.98164 0.98461 1.06220 1.24539 0.90521 0.94049 1.01863 1.84055 1.37964 1.26557 1.59836 1.24282 0.87528 0.94697 1.03498 1.22595 0.94131 0.98117 1.04163 1.22981 1.02742 1.02999 0.90785 1.23264 0.93518 1.03698 1.02131 0.93325 0.80227 0.94247 0.93628 0.75187 0.84844 0.87366 0.83773 0.75171 0.75786 0.86247 0.88568 0.87540 0.88490 0.88626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -62.02 13.97 21.65 0.30 -61.72 16 2 C -0.06 -3.34 5.50 84.86 0.47 -2.87 16 3 Si 0.95 45.16 27.74 68.60 1.90 47.07 16 4 H -0.29 -13.98 7.11 99.48 0.71 -13.27 16 5 H -0.29 -14.02 7.11 99.48 0.71 -13.31 16 6 H -0.25 -10.55 6.52 99.48 0.65 -9.90 16 7 C -0.23 -12.83 10.47 84.03 0.88 -11.95 16 8 H 0.06 3.75 8.06 -2.91 -0.02 3.72 16 9 N -0.76 -33.82 5.24 -343.45 -1.80 -35.62 16 10 C 0.15 5.42 5.80 86.38 0.50 5.93 16 11 C 0.18 5.31 2.59 44.99 0.12 5.42 16 12 H 0.06 2.28 7.58 -2.39 -0.02 2.27 16 13 N -0.71 -18.85 3.05 -442.54 -1.35 -20.21 16 14 C 0.51 13.89 6.66 87.66 0.58 14.47 16 15 O -0.57 -19.37 13.06 -3.03 -0.04 -19.41 16 16 C -0.07 -1.42 6.22 29.10 0.18 -1.23 16 17 C -0.18 -4.12 4.66 -19.94 -0.09 -4.21 16 18 C -0.23 -5.39 10.87 22.19 0.24 -5.14 16 19 C -0.04 -0.85 12.09 66.97 0.81 -0.04 16 20 O -0.19 -4.11 10.65 -2.52 -0.03 -4.14 16 21 C -0.03 -0.66 12.01 66.97 0.80 0.14 16 22 C -0.17 -4.20 5.70 -10.80 -0.06 -4.26 16 23 C -0.16 -3.23 9.74 30.62 0.30 -2.93 16 24 C -0.19 -4.55 9.82 30.62 0.30 -4.25 16 25 H 0.26 15.57 8.31 -92.71 -0.77 14.80 16 26 H 0.36 16.02 5.20 -92.71 -0.48 15.54 16 27 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 28 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 29 H 0.41 9.80 8.60 -92.71 -0.80 9.00 16 30 H 0.13 1.77 8.14 -2.38 -0.02 1.75 16 31 H 0.11 2.12 8.14 -2.39 -0.02 2.10 16 32 H 0.14 3.28 8.06 -2.91 -0.02 3.25 16 33 H 0.23 2.68 8.06 -2.91 -0.02 2.65 16 34 H 0.23 2.95 8.06 -2.91 -0.02 2.93 16 35 H 0.12 2.72 8.11 -2.38 -0.02 2.70 16 36 H 0.10 1.88 6.67 -2.39 -0.02 1.86 16 37 H 0.11 1.81 8.14 -2.39 -0.02 1.79 16 38 H 0.10 2.06 8.14 -2.38 -0.02 2.04 16 39 H 0.10 2.79 5.01 -2.38 -0.01 2.78 16 Total: -1.00 -73.07 327.15 3.75 -69.32 By element: Atomic # 1 Polarization: 35.92 SS G_CDS: -0.26 Total: 35.66 kcal Atomic # 6 Polarization: -15.97 SS G_CDS: 5.03 Total: -10.95 kcal Atomic # 7 Polarization: -114.70 SS G_CDS: -2.85 Total: -117.55 kcal Atomic # 8 Polarization: -23.48 SS G_CDS: -0.07 Total: -23.54 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 1.90 Total: 47.07 kcal Total: -73.07 3.75 -69.32 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716609741.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.171 kcal (2) G-P(sol) polarization free energy of solvation -73.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.315 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds