Wall clock time and date at job start Tue Mar 31 2020 00:02:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 119.99950 * 2 1 4 4 H 1.48501 * 109.46758 * 90.00140 * 3 2 1 5 5 H 1.48499 * 109.47026 * 209.99987 * 3 2 1 6 6 H 1.48496 * 109.47474 * 330.00023 * 3 2 1 7 7 C 1.38811 * 119.99540 * 180.27867 * 2 1 3 8 8 H 1.08001 * 119.99999 * 359.71854 * 7 2 1 9 9 N 1.36936 * 119.99842 * 179.72505 * 7 2 1 10 10 C 1.46493 * 120.00314 * 180.02562 * 9 7 2 11 11 H 1.09004 * 109.47092 * 34.99415 * 10 9 7 12 12 C 1.53006 * 109.46887 * 274.99849 * 10 9 7 13 13 O 1.42903 * 109.47139 * 294.99877 * 12 10 9 14 14 C 1.52993 * 109.47542 * 154.99721 * 10 9 7 15 15 N 1.46493 * 109.47346 * 305.00099 * 14 10 9 16 16 C 1.34781 * 120.00398 * 180.02562 * 15 14 10 17 17 O 1.21273 * 119.99559 * 359.97438 * 16 15 14 18 18 C 1.50703 * 120.00160 * 179.97438 * 16 15 14 19 19 C 1.50690 * 109.47154 * 179.97438 * 18 16 15 20 20 C 1.38239 * 120.00244 * 269.72919 * 19 18 16 21 21 C 1.38237 * 119.99947 * 179.76695 * 20 19 18 22 22 C 1.38238 * 119.99746 * 0.50316 * 21 20 19 23 23 C 1.38236 * 120.00294 * 359.75065 * 22 21 20 24 24 C 1.38234 * 119.99960 * 89.99983 * 19 18 16 25 25 H 0.96999 * 119.99889 * 359.97438 * 1 2 3 26 26 H 0.97000 * 119.99646 * 359.97438 * 9 7 2 27 27 H 1.08997 * 109.47285 * 54.99959 * 12 10 9 28 28 H 1.09002 * 109.47155 * 175.00004 * 12 10 9 29 29 H 0.96700 * 113.99965 * 180.02562 * 13 12 10 30 30 H 1.09009 * 109.47018 * 64.99747 * 14 10 9 31 31 H 1.09002 * 109.47579 * 184.99417 * 14 10 9 32 32 H 0.96998 * 119.99959 * 359.97438 * 15 14 10 33 33 H 1.08997 * 109.47068 * 300.00505 * 18 16 15 34 34 H 1.09008 * 109.46877 * 59.99887 * 18 16 15 35 35 H 1.07997 * 120.00160 * 359.97438 * 20 19 18 36 36 H 1.07992 * 120.00092 * 180.22961 * 21 20 19 37 37 H 1.08005 * 119.99803 * 179.72464 * 22 21 20 38 38 H 1.07998 * 119.99742 * 179.97438 * 23 22 21 39 39 H 1.08001 * 119.99982 * 0.02562 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0463 1.4001 5 1 3.5478 1.4402 -0.7000 6 1 1.4478 2.6527 -0.7000 7 6 2.0102 -1.2022 -0.0058 8 1 1.4701 -2.1375 -0.0058 9 7 3.3795 -1.2022 -0.0115 10 6 4.1120 -2.4709 -0.0183 11 1 3.5621 -3.2048 -0.6075 12 6 4.2641 -2.9795 1.4167 13 8 5.0834 -2.0739 2.1588 14 6 5.4966 -2.2572 -0.6331 15 7 5.3536 -1.6583 -1.9623 16 6 6.4485 -1.3791 -2.6971 17 8 7.5520 -1.6232 -2.2575 18 6 6.3013 -0.7635 -4.0647 19 6 7.6650 -0.5529 -4.6702 20 6 8.3356 0.6386 -4.4659 21 6 9.5887 0.8298 -5.0174 22 6 10.1667 -0.1664 -5.7818 23 6 9.4940 -1.3558 -5.9905 24 6 8.2431 -1.5490 -5.4347 25 1 -0.4850 0.8400 0.0004 26 1 3.8645 -0.3622 -0.0119 27 1 3.2818 -3.0473 1.8842 28 1 4.7299 -3.9650 1.4055 29 1 5.2233 -2.3343 3.0795 30 1 6.0785 -1.5916 0.0046 31 1 6.0077 -3.2161 -0.7196 32 1 4.4709 -1.4634 -2.3140 33 1 5.7191 -1.4291 -4.7020 34 1 5.7904 0.1956 -3.9784 35 1 7.8819 1.4187 -3.8726 36 1 10.1141 1.7592 -4.8547 37 1 11.1439 -0.0153 -6.2164 38 1 9.9455 -2.1339 -6.5881 39 1 7.7172 -2.4780 -5.5983 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725541795.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:02:46 Heat of formation + Delta-G solvation = -51.600140 kcal Electronic energy + Delta-G solvation = -21151.583745 eV Core-core repulsion = 17866.301943 eV Total energy + Delta-G solvation = -3285.281803 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.90310 -38.68761 -37.22955 -35.02192 -33.54310 -32.87803 -31.51111 -30.92249 -29.11782 -27.66040 -25.00478 -23.31382 -22.61835 -21.70111 -20.22950 -19.88144 -17.98391 -16.92107 -16.89989 -16.64523 -15.85706 -15.62095 -15.10859 -14.79895 -14.38035 -14.22595 -13.59627 -13.47672 -13.35019 -13.23460 -12.98057 -12.83925 -12.47818 -12.42834 -11.98141 -11.55832 -11.17706 -11.04929 -10.99964 -10.88586 -10.72027 -10.14938 -9.71169 -9.67600 -9.48015 -9.03368 -8.93545 -8.72968 -8.68820 -7.38060 -5.86115 -3.22557 1.30401 1.38848 2.89364 3.33135 3.39354 3.42008 3.45412 3.88871 4.52634 4.63514 4.78612 4.79530 4.94885 5.05406 5.15423 5.19243 5.24596 5.37348 5.42816 5.44655 5.51073 5.60328 5.80393 5.90283 5.91755 5.95998 6.00480 6.21983 6.36645 6.40644 6.46200 6.57169 6.60386 6.81199 6.96644 7.85250 7.87539 8.09188 8.32911 8.51586 9.10865 9.83461 10.03701 11.31560 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.019131 B = 0.004259 C = 0.003807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1463.220777 B = 6572.561462 C = 7353.706789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.010 3.990 3 Si 0.885 3.115 4 H -0.284 1.284 5 H -0.277 1.277 6 H -0.292 1.292 7 C -0.251 4.251 8 H 0.091 0.909 9 N -0.739 5.739 10 C 0.172 3.828 11 H 0.074 0.926 12 C 0.059 3.941 13 O -0.565 6.565 14 C 0.116 3.884 15 N -0.719 5.719 16 C 0.511 3.489 17 O -0.544 6.544 18 C -0.107 4.107 19 C -0.058 4.058 20 C -0.106 4.106 21 C -0.120 4.120 22 C -0.125 4.125 23 C -0.121 4.121 24 C -0.106 4.106 25 H 0.260 0.740 26 H 0.366 0.634 27 H 0.054 0.946 28 H 0.031 0.969 29 H 0.366 0.634 30 H 0.074 0.926 31 H 0.064 0.936 32 H 0.409 0.591 33 H 0.103 0.897 34 H 0.103 0.897 35 H 0.120 0.880 36 H 0.120 0.880 37 H 0.118 0.882 38 H 0.120 0.880 39 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.477 -3.303 -8.982 18.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.186 4.186 3 Si 0.715 3.285 4 H -0.210 1.210 5 H -0.203 1.203 6 H -0.218 1.218 7 C -0.381 4.381 8 H 0.108 0.892 9 N -0.382 5.382 10 C 0.061 3.939 11 H 0.092 0.908 12 C -0.022 4.022 13 O -0.369 6.369 14 C -0.008 4.008 15 N -0.371 5.371 16 C 0.297 3.703 17 O -0.421 6.421 18 C -0.147 4.147 19 C -0.059 4.059 20 C -0.124 4.124 21 C -0.138 4.138 22 C -0.143 4.143 23 C -0.139 4.139 24 C -0.124 4.124 25 H 0.070 0.930 26 H 0.199 0.801 27 H 0.072 0.928 28 H 0.049 0.951 29 H 0.211 0.789 30 H 0.092 0.908 31 H 0.082 0.918 32 H 0.245 0.755 33 H 0.121 0.879 34 H 0.122 0.878 35 H 0.138 0.862 36 H 0.138 0.862 37 H 0.136 0.864 38 H 0.138 0.862 39 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 15.993 -3.227 -9.249 18.755 hybrid contribution -0.033 0.964 0.608 1.140 sum 15.961 -2.263 -8.642 18.290 Atomic orbital electron populations 1.69702 1.05136 1.25986 1.56943 1.24646 0.95157 0.97226 1.01601 0.86556 0.79037 0.84872 0.78019 1.21046 1.20309 1.21823 1.19051 0.80426 0.94713 1.43872 0.89162 1.42728 1.03862 1.01824 1.89770 1.20568 0.90543 0.90546 0.92240 0.90806 1.22998 0.93772 0.90457 0.94987 1.86520 1.72193 1.51983 1.26180 1.21574 0.98221 0.98248 0.82788 1.46044 1.09509 1.63335 1.18197 1.20424 0.84595 0.78637 0.86678 1.90692 1.25655 1.53256 1.72539 1.20718 0.95998 1.03523 0.94486 1.19319 0.95238 0.94314 0.96988 1.21029 0.95137 0.97143 0.99095 1.21088 0.95446 0.99210 0.98073 1.21106 0.99773 0.94063 0.99392 1.21075 0.95083 0.97470 1.00298 1.20983 0.95700 0.98248 0.97506 0.92962 0.80064 0.92775 0.95117 0.78862 0.90752 0.91817 0.75512 0.87885 0.87838 0.86206 0.86211 0.86361 0.86233 0.86256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.12 13.97 55.49 0.78 -27.35 16 2 C 0.01 0.28 5.50 -17.43 -0.10 0.19 16 3 Si 0.88 21.71 27.74 -169.99 -4.72 17.00 16 4 H -0.28 -7.13 7.11 56.52 0.40 -6.72 16 5 H -0.28 -6.41 6.51 56.52 0.37 -6.05 16 6 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 7 C -0.25 -6.61 10.41 -15.06 -0.16 -6.77 16 8 H 0.09 2.53 8.06 -52.49 -0.42 2.11 16 9 N -0.74 -16.39 4.31 -53.43 -0.23 -16.62 16 10 C 0.17 3.09 2.84 -67.93 -0.19 2.89 16 11 H 0.07 1.29 8.08 -51.93 -0.42 0.87 16 12 C 0.06 0.97 6.86 37.16 0.25 1.23 16 13 O -0.57 -9.45 12.64 -35.23 -0.45 -9.90 16 14 C 0.12 1.95 5.12 -4.05 -0.02 1.93 16 15 N -0.72 -11.44 5.39 -60.30 -0.32 -11.77 16 16 C 0.51 8.13 7.82 -10.98 -0.09 8.04 16 17 O -0.54 -10.52 16.03 5.56 0.09 -10.43 16 18 C -0.11 -1.32 5.83 -29.04 -0.17 -1.49 16 19 C -0.06 -0.75 4.37 -104.63 -0.46 -1.21 16 20 C -0.11 -1.34 9.70 -39.58 -0.38 -1.73 16 21 C -0.12 -1.36 10.05 -39.58 -0.40 -1.75 16 22 C -0.13 -1.33 10.05 -39.58 -0.40 -1.72 16 23 C -0.12 -1.32 10.05 -39.58 -0.40 -1.71 16 24 C -0.11 -1.28 9.70 -39.58 -0.38 -1.66 16 25 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 26 H 0.37 8.44 5.65 -40.82 -0.23 8.21 16 27 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 28 H 0.03 0.42 8.14 -51.93 -0.42 -0.01 16 29 H 0.37 4.35 9.12 45.56 0.42 4.76 16 30 H 0.07 1.41 7.39 -51.92 -0.38 1.03 16 31 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 32 H 0.41 6.34 8.14 -40.82 -0.33 6.00 16 33 H 0.10 1.02 8.09 -51.93 -0.42 0.60 16 34 H 0.10 1.16 8.08 -51.92 -0.42 0.74 16 35 H 0.12 1.41 8.06 -52.49 -0.42 0.99 16 36 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 37 H 0.12 0.96 8.06 -52.48 -0.42 0.53 16 38 H 0.12 1.01 8.06 -52.49 -0.42 0.58 16 39 H 0.12 1.24 8.06 -52.49 -0.42 0.82 16 LS Contribution 334.74 15.07 5.04 5.04 Total: -1.00 -33.71 334.74 -7.46 -41.17 By element: Atomic # 1 Polarization: 21.39 SS G_CDS: -4.77 Total: 16.62 kcal Atomic # 6 Polarization: -0.89 SS G_CDS: -2.89 Total: -3.77 kcal Atomic # 7 Polarization: -55.95 SS G_CDS: 0.22 Total: -55.74 kcal Atomic # 8 Polarization: -19.97 SS G_CDS: -0.36 Total: -20.32 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -4.72 Total: 17.00 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -33.71 -7.46 -41.17 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725541795.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.435 kcal (2) G-P(sol) polarization free energy of solvation -33.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.166 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds