Wall clock time and date at job start Tue Mar 31 2020 00:02:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 119.99950 * 2 1 4 4 H 1.48501 * 109.46758 * 90.00140 * 3 2 1 5 5 H 1.48499 * 109.47026 * 209.99987 * 3 2 1 6 6 H 1.48496 * 109.47474 * 330.00023 * 3 2 1 7 7 C 1.38811 * 119.99540 * 180.27867 * 2 1 3 8 8 H 1.08001 * 119.99999 * 359.71854 * 7 2 1 9 9 N 1.36936 * 119.99842 * 179.72505 * 7 2 1 10 10 C 1.46493 * 120.00314 * 180.02562 * 9 7 2 11 11 H 1.09004 * 109.47092 * 34.99415 * 10 9 7 12 12 C 1.53006 * 109.46887 * 274.99849 * 10 9 7 13 13 O 1.42903 * 109.47139 * 294.99877 * 12 10 9 14 14 C 1.52993 * 109.47542 * 154.99721 * 10 9 7 15 15 N 1.46493 * 109.47346 * 305.00099 * 14 10 9 16 16 C 1.34781 * 120.00398 * 180.02562 * 15 14 10 17 17 O 1.21273 * 119.99559 * 359.97438 * 16 15 14 18 18 C 1.50703 * 120.00160 * 179.97438 * 16 15 14 19 19 C 1.50690 * 109.47154 * 179.97438 * 18 16 15 20 20 C 1.38239 * 120.00244 * 269.72919 * 19 18 16 21 21 C 1.38237 * 119.99947 * 179.76695 * 20 19 18 22 22 C 1.38238 * 119.99746 * 0.50316 * 21 20 19 23 23 C 1.38236 * 120.00294 * 359.75065 * 22 21 20 24 24 C 1.38234 * 119.99960 * 89.99983 * 19 18 16 25 25 H 0.96999 * 119.99889 * 359.97438 * 1 2 3 26 26 H 0.97000 * 119.99646 * 359.97438 * 9 7 2 27 27 H 1.08997 * 109.47285 * 54.99959 * 12 10 9 28 28 H 1.09002 * 109.47155 * 175.00004 * 12 10 9 29 29 H 0.96700 * 113.99965 * 180.02562 * 13 12 10 30 30 H 1.09009 * 109.47018 * 64.99747 * 14 10 9 31 31 H 1.09002 * 109.47579 * 184.99417 * 14 10 9 32 32 H 0.96998 * 119.99959 * 359.97438 * 15 14 10 33 33 H 1.08997 * 109.47068 * 300.00505 * 18 16 15 34 34 H 1.09008 * 109.46877 * 59.99887 * 18 16 15 35 35 H 1.07997 * 120.00160 * 359.97438 * 20 19 18 36 36 H 1.07992 * 120.00092 * 180.22961 * 21 20 19 37 37 H 1.08005 * 119.99803 * 179.72464 * 22 21 20 38 38 H 1.07998 * 119.99742 * 179.97438 * 23 22 21 39 39 H 1.08001 * 119.99982 * 0.02562 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0463 1.4001 5 1 3.5478 1.4402 -0.7000 6 1 1.4478 2.6527 -0.7000 7 6 2.0102 -1.2022 -0.0058 8 1 1.4701 -2.1375 -0.0058 9 7 3.3795 -1.2022 -0.0115 10 6 4.1120 -2.4709 -0.0183 11 1 3.5621 -3.2048 -0.6075 12 6 4.2641 -2.9795 1.4167 13 8 5.0834 -2.0739 2.1588 14 6 5.4966 -2.2572 -0.6331 15 7 5.3536 -1.6583 -1.9623 16 6 6.4485 -1.3791 -2.6971 17 8 7.5520 -1.6232 -2.2575 18 6 6.3013 -0.7635 -4.0647 19 6 7.6650 -0.5529 -4.6702 20 6 8.3356 0.6386 -4.4659 21 6 9.5887 0.8298 -5.0174 22 6 10.1667 -0.1664 -5.7818 23 6 9.4940 -1.3558 -5.9905 24 6 8.2431 -1.5490 -5.4347 25 1 -0.4850 0.8400 0.0004 26 1 3.8645 -0.3622 -0.0119 27 1 3.2818 -3.0473 1.8842 28 1 4.7299 -3.9650 1.4055 29 1 5.2233 -2.3343 3.0795 30 1 6.0785 -1.5916 0.0046 31 1 6.0077 -3.2161 -0.7196 32 1 4.4709 -1.4634 -2.3140 33 1 5.7191 -1.4291 -4.7020 34 1 5.7904 0.1956 -3.9784 35 1 7.8819 1.4187 -3.8726 36 1 10.1141 1.7592 -4.8547 37 1 11.1439 -0.0153 -6.2164 38 1 9.9455 -2.1339 -6.5881 39 1 7.7172 -2.4780 -5.5983 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725541795.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:02:45 Heat of formation + Delta-G solvation = -77.099342 kcal Electronic energy + Delta-G solvation = -21152.689474 eV Core-core repulsion = 17866.301943 eV Total energy + Delta-G solvation = -3286.387531 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.03255 -39.71579 -38.63707 -36.45233 -35.20203 -33.88197 -33.28973 -31.75356 -30.72910 -28.73084 -26.26938 -25.24376 -23.45815 -22.66468 -21.70742 -21.12121 -19.84865 -18.30407 -18.02778 -17.72259 -17.16164 -16.73059 -16.45168 -16.00199 -15.75881 -15.54015 -15.04993 -14.88430 -14.55575 -14.44159 -14.29121 -14.18989 -13.88363 -13.34556 -13.27877 -12.99231 -12.74122 -12.62544 -12.33615 -12.00303 -11.87504 -11.85493 -11.77939 -11.11892 -10.91268 -10.75778 -10.02355 -9.78600 -9.61519 -9.33092 -8.00838 -5.33384 0.43706 0.53533 1.37784 1.42400 1.47282 1.66649 2.29242 2.48901 2.96067 3.31272 3.46009 3.69597 3.70949 3.93228 3.95571 4.09555 4.17730 4.29380 4.36460 4.40752 4.52725 4.58873 4.60718 4.67162 4.78868 4.81951 4.97110 5.13392 5.17509 5.18352 5.49991 5.57802 5.63376 5.69524 5.78581 6.14547 6.22736 6.60108 7.01696 7.08954 7.27262 7.83517 8.02733 9.20084 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.019131 B = 0.004259 C = 0.003807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1463.220777 B = 6572.561462 C = 7353.706789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.980 5.980 2 C -0.054 4.054 3 Si 0.945 3.055 4 H -0.292 1.292 5 H -0.255 1.255 6 H -0.297 1.297 7 C -0.222 4.222 8 H 0.068 0.932 9 N -0.740 5.740 10 C 0.166 3.834 11 H 0.082 0.918 12 C 0.064 3.936 13 O -0.584 6.584 14 C 0.128 3.872 15 N -0.718 5.718 16 C 0.511 3.489 17 O -0.580 6.580 18 C -0.101 4.101 19 C -0.078 4.078 20 C -0.128 4.128 21 C -0.130 4.130 22 C -0.130 4.130 23 C -0.128 4.128 24 C -0.121 4.121 25 H 0.256 0.744 26 H 0.363 0.637 27 H 0.035 0.965 28 H 0.068 0.932 29 H 0.388 0.612 30 H 0.055 0.945 31 H 0.078 0.922 32 H 0.412 0.588 33 H 0.128 0.872 34 H 0.115 0.885 35 H 0.120 0.880 36 H 0.138 0.862 37 H 0.144 0.856 38 H 0.143 0.857 39 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.501 -3.628 -9.872 20.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.630 5.630 2 C -0.246 4.246 3 Si 0.774 3.226 4 H -0.219 1.219 5 H -0.180 1.180 6 H -0.224 1.224 7 C -0.353 4.353 8 H 0.086 0.914 9 N -0.383 5.383 10 C 0.058 3.942 11 H 0.100 0.900 12 C -0.016 4.016 13 O -0.391 6.391 14 C 0.003 3.997 15 N -0.370 5.370 16 C 0.299 3.701 17 O -0.460 6.460 18 C -0.141 4.141 19 C -0.079 4.079 20 C -0.146 4.146 21 C -0.148 4.148 22 C -0.147 4.147 23 C -0.146 4.146 24 C -0.139 4.139 25 H 0.065 0.935 26 H 0.196 0.804 27 H 0.053 0.947 28 H 0.086 0.914 29 H 0.236 0.764 30 H 0.073 0.927 31 H 0.096 0.904 32 H 0.248 0.752 33 H 0.146 0.854 34 H 0.133 0.867 35 H 0.138 0.862 36 H 0.156 0.844 37 H 0.162 0.838 38 H 0.161 0.839 39 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 18.063 -3.589 -10.134 21.021 hybrid contribution -0.577 0.940 0.904 1.426 sum 17.486 -2.649 -9.230 19.949 Atomic orbital electron populations 1.69850 1.06869 1.26429 1.59880 1.25289 0.95785 1.00477 1.03005 0.85565 0.78628 0.80885 0.77488 1.21899 1.18005 1.22368 1.19024 0.82137 0.93526 1.40620 0.91435 1.42699 1.02388 1.03395 1.89828 1.20814 0.90815 0.88853 0.93748 0.90023 1.22819 0.93402 0.92028 0.93388 1.86464 1.71974 1.52641 1.28021 1.21383 0.96910 0.98519 0.82877 1.46062 1.09804 1.63236 1.17876 1.21008 0.83757 0.77761 0.87601 1.90671 1.26952 1.54838 1.73580 1.20744 0.96523 1.04272 0.92531 1.19490 0.95713 0.94868 0.97825 1.21241 0.96065 0.97446 0.99879 1.21403 0.95174 1.00319 0.97889 1.21483 1.00774 0.93670 0.98807 1.21441 0.94763 0.98259 1.00094 1.21255 0.96460 0.98565 0.97668 0.93459 0.80374 0.94656 0.91376 0.76388 0.92705 0.90358 0.75167 0.85418 0.86724 0.86191 0.84399 0.83797 0.83900 0.85166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -60.31 13.97 21.65 0.30 -60.00 16 2 C -0.05 -3.01 5.50 84.86 0.47 -2.55 16 3 Si 0.95 44.88 27.74 68.60 1.90 46.78 16 4 H -0.29 -14.15 7.11 99.48 0.71 -13.44 16 5 H -0.26 -11.02 6.51 99.48 0.65 -10.38 16 6 H -0.30 -14.24 7.11 99.48 0.71 -13.54 16 7 C -0.22 -11.67 10.41 84.03 0.87 -10.80 16 8 H 0.07 3.83 8.06 -2.91 -0.02 3.80 16 9 N -0.74 -31.93 4.31 -322.95 -1.39 -33.32 16 10 C 0.17 5.70 2.84 44.99 0.13 5.83 16 11 H 0.08 2.69 8.08 -2.39 -0.02 2.67 16 12 C 0.06 1.99 6.86 71.98 0.49 2.48 16 13 O -0.58 -18.35 12.64 -148.98 -1.88 -20.24 16 14 C 0.13 4.07 5.12 86.38 0.44 4.51 16 15 N -0.72 -21.64 5.39 -463.07 -2.49 -24.14 16 16 C 0.51 15.53 7.82 87.66 0.69 16.21 16 17 O -0.58 -21.90 16.03 -3.01 -0.05 -21.95 16 18 C -0.10 -2.32 5.83 29.10 0.17 -2.15 16 19 C -0.08 -1.94 4.37 -19.87 -0.09 -2.02 16 20 C -0.13 -3.13 9.70 22.27 0.22 -2.91 16 21 C -0.13 -2.73 10.05 22.27 0.22 -2.51 16 22 C -0.13 -2.45 10.05 22.27 0.22 -2.23 16 23 C -0.13 -2.50 10.05 22.27 0.22 -2.28 16 24 C -0.12 -2.72 9.70 22.27 0.22 -2.51 16 25 H 0.26 15.21 8.31 -92.71 -0.77 14.44 16 26 H 0.36 16.13 5.65 -92.71 -0.52 15.61 16 27 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 28 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 29 H 0.39 8.34 9.12 -74.06 -0.68 7.67 16 30 H 0.05 2.00 7.39 -2.38 -0.02 1.98 16 31 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 32 H 0.41 12.02 8.14 -92.71 -0.75 11.27 16 33 H 0.13 2.24 8.09 -2.39 -0.02 2.22 16 34 H 0.11 2.36 8.08 -2.38 -0.02 2.34 16 35 H 0.12 2.76 8.06 -2.91 -0.02 2.74 16 36 H 0.14 2.25 8.06 -2.91 -0.02 2.22 16 37 H 0.14 1.89 8.06 -2.91 -0.02 1.87 16 38 H 0.14 2.01 8.06 -2.91 -0.02 1.99 16 39 H 0.13 2.49 8.06 -2.91 -0.02 2.46 16 Total: -1.00 -72.52 334.74 -0.27 -72.79 By element: Atomic # 1 Polarization: 41.94 SS G_CDS: -0.94 Total: 41.01 kcal Atomic # 6 Polarization: -5.20 SS G_CDS: 4.28 Total: -0.93 kcal Atomic # 7 Polarization: -113.88 SS G_CDS: -3.59 Total: -117.47 kcal Atomic # 8 Polarization: -40.26 SS G_CDS: -1.93 Total: -42.19 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 1.90 Total: 46.78 kcal Total: -72.52 -0.27 -72.79 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725541795.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.308 kcal (2) G-P(sol) polarization free energy of solvation -72.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.791 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds