Wall clock time and date at job start Tue Mar 31 2020 00:17:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31610 * 1 3 3 Si 1.86809 * 120.00115 * 2 1 4 4 H 1.48500 * 109.47097 * 269.99995 * 3 2 1 5 5 H 1.48496 * 109.46771 * 30.00387 * 3 2 1 6 6 H 1.48500 * 109.46838 * 149.99763 * 3 2 1 7 7 C 1.38813 * 120.00100 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99774 * 359.71908 * 7 2 1 9 9 N 1.36938 * 120.00038 * 180.02562 * 7 2 1 10 10 C 1.46505 * 119.99737 * 174.45800 * 9 7 2 11 11 C 1.53004 * 115.55024 * 65.27445 * 10 9 7 12 12 N 1.46500 * 109.46948 * 80.38544 * 11 10 9 13 13 C 1.34773 * 120.00008 * 174.94227 * 12 11 10 14 14 O 1.21285 * 119.99891 * 0.02562 * 13 12 11 15 15 C 1.50698 * 120.00207 * 180.02562 * 13 12 11 16 16 C 1.53000 * 109.47155 * 180.02562 * 15 13 12 17 17 C 1.50698 * 109.47155 * 180.02562 * 16 15 13 18 18 C 1.34516 * 125.79039 * 89.71639 * 17 16 15 19 19 C 1.41382 * 106.83894 * 179.88952 * 18 17 16 20 20 C 1.34509 * 106.84430 * 0.36979 * 19 18 17 21 21 O 1.34304 * 108.42108 * 359.77430 * 20 19 18 22 22 C 1.52995 * 117.50027 * 279.60168 * 10 9 7 23 23 C 1.53002 * 117.49538 * 210.94152 * 10 9 7 24 24 H 0.97005 * 119.99848 * 0.02562 * 1 2 3 25 25 H 0.96998 * 119.99766 * 354.45404 * 9 7 2 26 26 H 1.08994 * 109.47169 * 200.38629 * 11 10 9 27 27 H 1.08999 * 109.47048 * 320.39246 * 11 10 9 28 28 H 0.97001 * 120.00206 * 354.95307 * 12 11 10 29 29 H 1.09002 * 109.47042 * 300.00222 * 15 13 12 30 30 H 1.09002 * 109.47279 * 60.00557 * 15 13 12 31 31 H 1.09001 * 109.47396 * 300.00256 * 16 15 13 32 32 H 1.08998 * 109.47293 * 59.99673 * 16 15 13 33 33 H 1.08003 * 126.58035 * 0.02587 * 18 17 16 34 34 H 1.08003 * 126.57386 * 180.16336 * 19 18 17 35 35 H 1.08001 * 125.79088 * 179.75355 * 20 19 18 36 36 H 1.09007 * 117.49708 * 0.02562 * 22 10 9 37 37 H 1.08996 * 117.50212 * 145.01890 * 22 10 9 38 38 H 1.08996 * 117.49829 * 214.97758 * 23 10 9 39 39 H 1.08994 * 117.49914 * 359.97438 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4476 2.6526 0.7001 6 1 3.5477 1.4401 0.7001 7 6 2.0102 -1.2021 -0.0005 8 1 1.4702 -2.1374 0.0036 9 7 3.3796 -1.2021 0.0000 10 6 4.1120 -2.4651 0.1220 11 6 3.9423 -3.4416 -1.0437 12 7 4.8197 -3.0422 -2.1469 13 6 4.9155 -3.8164 -3.2459 14 8 4.2750 -4.8436 -3.3217 15 6 5.8183 -3.4059 -4.3804 16 6 5.7428 -4.4504 -5.4959 17 6 6.6462 -4.0403 -6.6302 18 6 7.9435 -4.3705 -6.7615 19 6 8.3969 -3.7796 -7.9633 20 6 7.3518 -3.1168 -8.4902 21 8 6.2940 -3.2782 -7.6786 22 6 4.2686 -3.0584 1.5235 23 6 5.4730 -2.4278 0.8200 24 1 -0.4850 0.8401 -0.0004 25 1 3.8645 -0.3660 -0.0804 26 1 4.2052 -4.4474 -0.7163 27 1 2.9059 -3.4284 -1.3808 28 1 5.3317 -2.2206 -2.0863 29 1 5.4989 -2.4382 -4.7671 30 1 6.8444 -3.3324 -4.0200 31 1 6.0620 -5.4184 -5.1095 32 1 4.7167 -4.5236 -5.8563 33 1 8.5263 -4.9734 -6.0808 34 1 9.3925 -3.8449 -8.3769 35 1 7.3617 -2.5507 -9.4099 36 1 3.8263 -2.5093 2.3548 37 1 4.2511 -4.1444 1.6151 38 1 6.2474 -3.0992 0.4491 39 1 5.8236 -1.4636 1.1880 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733237818.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:17:46 Heat of formation + Delta-G solvation = 11.871177 kcal Electronic energy + Delta-G solvation = -20770.409088 eV Core-core repulsion = 17487.879608 eV Total energy + Delta-G solvation = -3282.529480 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.72668 -39.57003 -37.69924 -34.19077 -33.82104 -33.04454 -32.93790 -30.39041 -29.26335 -26.77072 -24.16824 -23.58058 -21.99637 -21.92241 -20.56319 -20.05533 -19.11985 -17.71859 -17.62875 -16.80097 -16.13134 -15.90356 -15.58201 -15.05509 -14.66153 -14.27184 -14.00951 -13.64146 -13.24762 -13.00529 -12.83722 -12.75986 -12.59022 -12.28916 -12.25660 -11.97928 -11.26564 -11.20352 -11.09451 -11.01924 -10.57591 -10.17113 -10.11389 -9.80705 -9.66597 -9.41136 -8.94039 -8.68731 -8.62397 -7.40123 -5.84236 -3.22901 1.54348 2.42016 2.80859 2.84434 3.30534 3.32245 3.39238 3.42795 4.32387 4.50687 4.52493 4.76625 4.81550 4.86404 4.93978 4.98709 5.09355 5.17360 5.37553 5.42769 5.50044 5.54421 5.62867 5.69541 5.79801 5.82510 5.95555 5.99524 6.14766 6.28690 6.32426 6.36467 6.58548 6.65793 6.76455 6.97501 7.77833 7.91849 8.34214 8.45065 9.10749 9.82171 9.99977 11.33427 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.019040 B = 0.003560 C = 0.003277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1470.242318 B = 7862.743919 C = 8542.218117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.009 3.991 3 Si 0.882 3.118 4 H -0.284 1.284 5 H -0.290 1.290 6 H -0.277 1.277 7 C -0.245 4.245 8 H 0.093 0.907 9 N -0.714 5.714 10 C 0.132 3.868 11 C 0.147 3.853 12 N -0.713 5.713 13 C 0.510 3.490 14 O -0.549 6.549 15 C -0.138 4.138 16 C -0.025 4.025 17 C -0.004 4.004 18 C -0.214 4.214 19 C -0.215 4.215 20 C -0.046 4.046 21 O -0.175 6.175 22 C -0.181 4.181 23 C -0.188 4.188 24 H 0.261 0.739 25 H 0.364 0.636 26 H 0.064 0.936 27 H 0.080 0.920 28 H 0.400 0.600 29 H 0.097 0.903 30 H 0.095 0.905 31 H 0.102 0.898 32 H 0.091 0.909 33 H 0.147 0.853 34 H 0.146 0.854 35 H 0.201 0.799 36 H 0.097 0.903 37 H 0.086 0.914 38 H 0.090 0.910 39 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.469 -6.395 -11.096 22.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.187 4.187 3 Si 0.712 3.288 4 H -0.210 1.210 5 H -0.216 1.216 6 H -0.203 1.203 7 C -0.374 4.374 8 H 0.111 0.889 9 N -0.355 5.355 10 C 0.039 3.961 11 C 0.022 3.978 12 N -0.363 5.363 13 C 0.296 3.704 14 O -0.427 6.427 15 C -0.178 4.178 16 C -0.062 4.062 17 C -0.055 4.055 18 C -0.233 4.233 19 C -0.234 4.234 20 C -0.114 4.114 21 O -0.071 6.071 22 C -0.221 4.221 23 C -0.226 4.226 24 H 0.071 0.929 25 H 0.198 0.802 26 H 0.082 0.918 27 H 0.099 0.901 28 H 0.233 0.767 29 H 0.115 0.885 30 H 0.114 0.886 31 H 0.120 0.880 32 H 0.109 0.891 33 H 0.165 0.835 34 H 0.164 0.836 35 H 0.218 0.782 36 H 0.116 0.884 37 H 0.105 0.895 38 H 0.108 0.892 39 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 17.418 -7.036 -11.162 21.851 hybrid contribution 1.073 1.766 -0.005 2.067 sum 18.491 -5.269 -11.167 22.234 Atomic orbital electron populations 1.69693 1.05099 1.25937 1.56787 1.24679 0.95207 0.97145 1.01688 0.86594 0.79278 0.85135 0.77773 1.21038 1.21645 1.20290 1.18984 0.80011 0.94837 1.43596 0.88932 1.42112 1.03827 1.01100 1.88510 1.20076 0.94587 0.90159 0.91293 1.21244 0.95135 0.96002 0.85443 1.45931 1.46606 1.25917 1.17821 1.20445 0.82701 0.83961 0.83280 1.90700 1.46242 1.25244 1.80516 1.21656 1.00833 1.00965 0.94326 1.19859 0.99115 0.98758 0.88508 1.22549 0.95396 0.97051 0.90455 1.21616 0.94820 1.06736 1.00113 1.21834 1.00540 1.03302 0.97759 1.24029 0.85197 1.04639 0.97493 1.84053 1.37796 1.55876 1.29341 1.23356 1.01176 0.99511 0.98076 1.23128 0.91367 1.02511 1.05613 0.92910 0.80173 0.91806 0.90132 0.76660 0.88489 0.88618 0.87997 0.89075 0.83473 0.83586 0.78245 0.88419 0.89527 0.89164 0.89174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.64 13.97 55.49 0.78 -27.86 16 2 C 0.01 0.26 5.50 -17.43 -0.10 0.16 16 3 Si 0.88 21.31 27.68 -169.99 -4.71 16.61 16 4 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 5 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 6 H -0.28 -6.25 6.60 56.52 0.37 -5.87 16 7 C -0.24 -6.63 10.05 -15.06 -0.15 -6.78 16 8 H 0.09 2.74 7.99 -52.49 -0.42 2.32 16 9 N -0.71 -15.84 5.29 -47.23 -0.25 -16.09 16 10 C 0.13 2.37 2.15 -131.82 -0.28 2.09 16 11 C 0.15 2.56 5.73 -4.04 -0.02 2.54 16 12 N -0.71 -10.47 5.51 -60.30 -0.33 -10.80 16 13 C 0.51 7.45 7.83 -10.99 -0.09 7.36 16 14 O -0.55 -10.00 15.98 5.55 0.09 -9.92 16 15 C -0.14 -1.47 5.68 -27.88 -0.16 -1.63 16 16 C -0.02 -0.27 5.04 -27.88 -0.14 -0.41 16 17 C 0.00 -0.05 6.58 -35.62 -0.23 -0.28 16 18 C -0.21 -2.11 10.81 -39.70 -0.43 -2.54 16 19 C -0.22 -1.93 10.91 -39.70 -0.43 -2.36 16 20 C -0.05 -0.41 12.09 29.41 0.36 -0.05 16 21 O -0.17 -2.02 10.65 5.69 0.06 -1.96 16 22 C -0.18 -2.96 10.11 -26.70 -0.27 -3.23 16 23 C -0.19 -2.72 10.14 -26.69 -0.27 -2.99 16 24 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 25 H 0.36 7.89 5.96 -40.82 -0.24 7.65 16 26 H 0.06 1.05 7.94 -51.93 -0.41 0.64 16 27 H 0.08 1.69 7.72 -51.93 -0.40 1.29 16 28 H 0.40 5.09 8.48 -40.82 -0.35 4.75 16 29 H 0.10 1.00 8.14 -51.93 -0.42 0.57 16 30 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.10 1.05 8.10 -51.93 -0.42 0.63 16 32 H 0.09 1.09 8.10 -51.93 -0.42 0.67 16 33 H 0.15 1.20 8.06 -52.48 -0.42 0.77 16 34 H 0.15 0.97 8.06 -52.48 -0.42 0.55 16 35 H 0.20 1.03 8.06 -52.49 -0.42 0.61 16 36 H 0.10 1.74 8.14 -51.92 -0.42 1.32 16 37 H 0.09 1.26 8.08 -51.93 -0.42 0.84 16 38 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 39 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16 LS Contribution 338.06 15.07 5.09 5.09 Total: -1.00 -33.13 338.06 -7.12 -40.25 By element: Atomic # 1 Polarization: 18.43 SS G_CDS: -5.63 Total: 12.80 kcal Atomic # 6 Polarization: -5.90 SS G_CDS: -2.22 Total: -8.12 kcal Atomic # 7 Polarization: -54.95 SS G_CDS: 0.19 Total: -54.76 kcal Atomic # 8 Polarization: -12.02 SS G_CDS: 0.15 Total: -11.87 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -4.71 Total: 16.61 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -33.13 -7.12 -40.25 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733237818.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.119 kcal (2) G-P(sol) polarization free energy of solvation -33.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.248 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds