Wall clock time and date at job start Tue Mar 31 2020 00:17:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31610 * 1 3 3 Si 1.86809 * 120.00115 * 2 1 4 4 H 1.48500 * 109.47097 * 269.99995 * 3 2 1 5 5 H 1.48496 * 109.46771 * 30.00387 * 3 2 1 6 6 H 1.48500 * 109.46838 * 149.99763 * 3 2 1 7 7 C 1.38813 * 120.00100 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99774 * 359.71908 * 7 2 1 9 9 N 1.36938 * 120.00038 * 180.02562 * 7 2 1 10 10 C 1.46505 * 119.99737 * 174.45800 * 9 7 2 11 11 C 1.53004 * 115.55024 * 65.27445 * 10 9 7 12 12 N 1.46500 * 109.46948 * 80.38544 * 11 10 9 13 13 C 1.34773 * 120.00008 * 174.94227 * 12 11 10 14 14 O 1.21285 * 119.99891 * 0.02562 * 13 12 11 15 15 C 1.50698 * 120.00207 * 180.02562 * 13 12 11 16 16 C 1.53000 * 109.47155 * 180.02562 * 15 13 12 17 17 C 1.50698 * 109.47155 * 180.02562 * 16 15 13 18 18 C 1.34516 * 125.79039 * 89.71639 * 17 16 15 19 19 C 1.41382 * 106.83894 * 179.88952 * 18 17 16 20 20 C 1.34509 * 106.84430 * 0.36979 * 19 18 17 21 21 O 1.34304 * 108.42108 * 359.77430 * 20 19 18 22 22 C 1.52995 * 117.50027 * 279.60168 * 10 9 7 23 23 C 1.53002 * 117.49538 * 210.94152 * 10 9 7 24 24 H 0.97005 * 119.99848 * 0.02562 * 1 2 3 25 25 H 0.96998 * 119.99766 * 354.45404 * 9 7 2 26 26 H 1.08994 * 109.47169 * 200.38629 * 11 10 9 27 27 H 1.08999 * 109.47048 * 320.39246 * 11 10 9 28 28 H 0.97001 * 120.00206 * 354.95307 * 12 11 10 29 29 H 1.09002 * 109.47042 * 300.00222 * 15 13 12 30 30 H 1.09002 * 109.47279 * 60.00557 * 15 13 12 31 31 H 1.09001 * 109.47396 * 300.00256 * 16 15 13 32 32 H 1.08998 * 109.47293 * 59.99673 * 16 15 13 33 33 H 1.08003 * 126.58035 * 0.02587 * 18 17 16 34 34 H 1.08003 * 126.57386 * 180.16336 * 19 18 17 35 35 H 1.08001 * 125.79088 * 179.75355 * 20 19 18 36 36 H 1.09007 * 117.49708 * 0.02562 * 22 10 9 37 37 H 1.08996 * 117.50212 * 145.01890 * 22 10 9 38 38 H 1.08996 * 117.49829 * 214.97758 * 23 10 9 39 39 H 1.08994 * 117.49914 * 359.97438 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4476 2.6526 0.7001 6 1 3.5477 1.4401 0.7001 7 6 2.0102 -1.2021 -0.0005 8 1 1.4702 -2.1374 0.0036 9 7 3.3796 -1.2021 0.0000 10 6 4.1120 -2.4651 0.1220 11 6 3.9423 -3.4416 -1.0437 12 7 4.8197 -3.0422 -2.1469 13 6 4.9155 -3.8164 -3.2459 14 8 4.2750 -4.8436 -3.3217 15 6 5.8183 -3.4059 -4.3804 16 6 5.7428 -4.4504 -5.4959 17 6 6.6462 -4.0403 -6.6302 18 6 7.9435 -4.3705 -6.7615 19 6 8.3969 -3.7796 -7.9633 20 6 7.3518 -3.1168 -8.4902 21 8 6.2940 -3.2782 -7.6786 22 6 4.2686 -3.0584 1.5235 23 6 5.4730 -2.4278 0.8200 24 1 -0.4850 0.8401 -0.0004 25 1 3.8645 -0.3660 -0.0804 26 1 4.2052 -4.4474 -0.7163 27 1 2.9059 -3.4284 -1.3808 28 1 5.3317 -2.2206 -2.0863 29 1 5.4989 -2.4382 -4.7671 30 1 6.8444 -3.3324 -4.0200 31 1 6.0620 -5.4184 -5.1095 32 1 4.7167 -4.5236 -5.8563 33 1 8.5263 -4.9734 -6.0808 34 1 9.3925 -3.8449 -8.3769 35 1 7.3617 -2.5507 -9.4099 36 1 3.8263 -2.5093 2.3548 37 1 4.2511 -4.1444 1.6151 38 1 6.2474 -3.0992 0.4491 39 1 5.8236 -1.4636 1.1880 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733237818.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:17:45 Heat of formation + Delta-G solvation = -11.423779 kcal Electronic energy + Delta-G solvation = -20771.419233 eV Core-core repulsion = 17487.879608 eV Total energy + Delta-G solvation = -3283.539625 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -43.45574 -40.81609 -39.11077 -35.36085 -35.03152 -34.80633 -33.67067 -32.36666 -30.14238 -27.95773 -25.69829 -25.02291 -23.25761 -22.62887 -21.44300 -21.14904 -20.59104 -19.72953 -18.51113 -17.83933 -17.23198 -16.98908 -16.70652 -16.36390 -16.19426 -15.59563 -15.26265 -14.75494 -14.70839 -14.40647 -14.11890 -13.69071 -13.58028 -13.49185 -13.24722 -13.07213 -12.98265 -12.86163 -12.36158 -12.26389 -12.05991 -11.82220 -11.67212 -11.12192 -10.99789 -10.81727 -10.62467 -10.01397 -9.37375 -9.31497 -8.02392 -5.38497 0.81454 1.37138 1.41569 1.48901 1.66970 1.73612 2.05523 2.33315 2.47901 3.02228 3.27114 3.41767 3.66479 3.80392 3.91825 4.05514 4.15529 4.17962 4.19680 4.27708 4.34829 4.58108 4.75896 4.77761 4.81724 4.85540 4.97333 5.00437 5.04242 5.10589 5.16851 5.27632 5.36776 5.50067 5.66537 5.79280 6.20966 6.26085 6.62580 7.06847 7.29523 7.80644 8.00170 9.19130 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.019040 B = 0.003560 C = 0.003277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1470.242318 B = 7862.743919 C = 8542.218117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.985 5.985 2 C -0.065 4.065 3 Si 0.958 3.042 4 H -0.278 1.278 5 H -0.300 1.300 6 H -0.245 1.245 7 C -0.223 4.223 8 H 0.051 0.949 9 N -0.716 5.716 10 C 0.099 3.901 11 C 0.159 3.841 12 N -0.706 5.706 13 C 0.508 3.492 14 O -0.590 6.590 15 C -0.124 4.124 16 C -0.020 4.020 17 C -0.027 4.027 18 C -0.213 4.213 19 C -0.226 4.226 20 C -0.049 4.049 21 O -0.198 6.198 22 C -0.188 4.188 23 C -0.143 4.143 24 H 0.257 0.743 25 H 0.371 0.629 26 H 0.074 0.926 27 H 0.031 0.969 28 H 0.412 0.588 29 H 0.104 0.896 30 H 0.128 0.872 31 H 0.105 0.895 32 H 0.070 0.930 33 H 0.163 0.837 34 H 0.169 0.831 35 H 0.233 0.767 36 H 0.080 0.920 37 H 0.104 0.896 38 H 0.123 0.877 39 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.631 -5.635 -11.543 26.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.636 5.636 2 C -0.257 4.257 3 Si 0.785 3.215 4 H -0.204 1.204 5 H -0.228 1.228 6 H -0.170 1.170 7 C -0.354 4.354 8 H 0.069 0.931 9 N -0.357 5.357 10 C 0.008 3.992 11 C 0.033 3.967 12 N -0.357 5.357 13 C 0.296 3.704 14 O -0.471 6.471 15 C -0.164 4.164 16 C -0.058 4.058 17 C -0.077 4.077 18 C -0.232 4.232 19 C -0.245 4.245 20 C -0.115 4.115 21 O -0.095 6.095 22 C -0.228 4.228 23 C -0.180 4.180 24 H 0.066 0.934 25 H 0.205 0.795 26 H 0.092 0.908 27 H 0.049 0.951 28 H 0.248 0.752 29 H 0.122 0.878 30 H 0.146 0.854 31 H 0.123 0.877 32 H 0.088 0.912 33 H 0.181 0.819 34 H 0.187 0.813 35 H 0.249 0.751 36 H 0.098 0.902 37 H 0.122 0.878 38 H 0.141 0.859 39 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 21.666 -6.294 -11.603 25.371 hybrid contribution -0.210 1.381 0.089 1.400 sum 21.456 -4.913 -11.515 24.841 Atomic orbital electron populations 1.69900 1.07380 1.26677 1.59600 1.25550 0.96078 1.01432 1.02597 0.85371 0.78792 0.79291 0.78046 1.20432 1.22761 1.16953 1.18849 0.82360 0.93103 1.41086 0.93145 1.41966 1.02014 1.03118 1.88648 1.20278 0.97818 0.89037 0.92113 1.20894 0.93072 0.96641 0.86085 1.45856 1.46051 1.26457 1.17300 1.21163 0.82390 0.83115 0.83734 1.90685 1.47994 1.27183 1.81263 1.21624 1.01391 1.00861 0.92476 1.19746 0.98107 0.99080 0.88834 1.22521 0.95879 0.98445 0.90850 1.21930 0.94464 1.06187 1.00610 1.22197 1.01665 1.03089 0.97505 1.24780 0.84505 1.04311 0.97934 1.84036 1.39151 1.56392 1.29969 1.23387 1.02711 1.00597 0.96120 1.23236 0.89982 1.03201 1.01628 0.93408 0.79497 0.90797 0.95078 0.75154 0.87811 0.85418 0.87720 0.91170 0.81923 0.81332 0.75123 0.90164 0.87770 0.85880 0.88074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.99 -63.30 13.97 21.65 0.30 -63.00 16 2 C -0.07 -3.80 5.50 84.86 0.47 -3.33 16 3 Si 0.96 44.11 27.68 68.60 1.90 46.01 16 4 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 5 H -0.30 -14.28 7.11 99.48 0.71 -13.58 16 6 H -0.25 -9.89 6.60 99.48 0.66 -9.24 16 7 C -0.22 -12.43 10.05 84.03 0.84 -11.58 16 8 H 0.05 3.18 7.99 -2.91 -0.02 3.15 16 9 N -0.72 -31.15 5.29 -303.34 -1.60 -32.75 16 10 C 0.10 3.42 2.15 3.60 0.01 3.42 16 11 C 0.16 5.52 5.73 86.38 0.49 6.02 16 12 N -0.71 -19.73 5.51 -463.06 -2.55 -22.29 16 13 C 0.51 14.40 7.83 87.66 0.69 15.09 16 14 O -0.59 -21.82 15.98 -3.04 -0.05 -21.87 16 15 C -0.12 -2.41 5.68 29.85 0.17 -2.24 16 16 C -0.02 -0.42 5.04 29.85 0.15 -0.27 16 17 C -0.03 -0.56 6.58 24.83 0.16 -0.40 16 18 C -0.21 -3.72 10.81 22.19 0.24 -3.48 16 19 C -0.23 -3.45 10.91 22.19 0.24 -3.21 16 20 C -0.05 -0.76 12.09 66.97 0.81 0.05 16 21 O -0.20 -4.37 10.65 -2.55 -0.03 -4.40 16 22 C -0.19 -5.80 10.11 30.62 0.31 -5.49 16 23 C -0.14 -3.53 10.14 30.62 0.31 -3.22 16 24 H 0.26 15.75 8.31 -92.70 -0.77 14.98 16 25 H 0.37 15.12 5.96 -92.71 -0.55 14.57 16 26 H 0.07 2.40 7.94 -2.39 -0.02 2.38 16 27 H 0.03 1.37 7.72 -2.39 -0.02 1.36 16 28 H 0.41 9.38 8.48 -92.71 -0.79 8.59 16 29 H 0.10 1.93 8.14 -2.39 -0.02 1.92 16 30 H 0.13 1.70 8.14 -2.39 -0.02 1.68 16 31 H 0.10 2.09 8.10 -2.39 -0.02 2.07 16 32 H 0.07 1.74 8.10 -2.39 -0.02 1.72 16 33 H 0.16 2.20 8.06 -2.91 -0.02 2.17 16 34 H 0.17 1.69 8.06 -2.91 -0.02 1.67 16 35 H 0.23 1.73 8.06 -2.91 -0.02 1.70 16 36 H 0.08 2.78 8.14 -2.38 -0.02 2.76 16 37 H 0.10 2.82 8.08 -2.39 -0.02 2.80 16 38 H 0.12 2.32 8.14 -2.39 -0.02 2.30 16 39 H 0.10 2.37 8.14 -2.39 -0.02 2.35 16 Total: -1.00 -75.89 338.06 2.54 -73.35 By element: Atomic # 1 Polarization: 33.93 SS G_CDS: -0.32 Total: 33.61 kcal Atomic # 6 Polarization: -13.55 SS G_CDS: 4.89 Total: -8.66 kcal Atomic # 7 Polarization: -114.18 SS G_CDS: -3.86 Total: -118.04 kcal Atomic # 8 Polarization: -26.19 SS G_CDS: -0.08 Total: -26.27 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 1.90 Total: 46.01 kcal Total: -75.89 2.54 -73.35 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733237818.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.927 kcal (2) G-P(sol) polarization free energy of solvation -75.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.351 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds