Wall clock time and date at job start Tue Mar 31 2020 00:19:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86803 * 119.99973 * 2 1 4 4 H 1.48503 * 109.47112 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47017 * 300.00238 * 3 2 1 6 6 H 1.48502 * 109.47098 * 59.99899 * 3 2 1 7 7 C 1.38807 * 120.00184 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00346 * 179.97438 * 7 2 1 9 9 N 1.36939 * 119.99940 * 0.02562 * 7 2 1 10 10 C 1.47423 * 125.64808 * 345.71654 * 9 7 2 11 11 C 1.54906 * 104.83394 * 204.16988 * 10 9 7 12 12 C 1.55407 * 101.66315 * 323.07378 * 11 10 9 13 13 C 1.47017 * 125.64876 * 165.76330 * 9 7 2 14 14 H 1.09002 * 109.88372 * 59.32922 * 13 9 7 15 15 C 1.53002 * 109.88734 * 298.31858 * 13 9 7 16 16 N 1.46494 * 109.47650 * 174.60059 * 15 13 9 17 17 C 1.34771 * 120.00463 * 174.71975 * 16 15 13 18 18 O 1.21286 * 119.99559 * 0.02562 * 17 16 15 19 19 C 1.50695 * 120.00604 * 180.02562 * 17 16 15 20 20 C 1.50700 * 109.47347 * 180.02562 * 19 17 16 21 21 C 1.34517 * 125.78845 * 90.00019 * 20 19 17 22 22 C 1.41390 * 106.83451 * 180.02562 * 21 20 19 23 23 C 1.34506 * 106.84421 * 359.97438 * 22 21 20 24 24 O 1.34301 * 125.78642 * 270.34482 * 20 19 17 25 25 H 0.97007 * 120.00258 * 0.02562 * 1 2 3 26 26 H 1.09000 * 110.36804 * 323.00950 * 10 9 7 27 27 H 1.09002 * 110.36504 * 85.21876 * 10 9 7 28 28 H 1.08992 * 111.00627 * 81.06402 * 11 10 9 29 29 H 1.09003 * 111.00759 * 204.92068 * 11 10 9 30 30 H 1.08997 * 110.69762 * 277.04416 * 12 11 10 31 31 H 1.09002 * 110.85266 * 153.69984 * 12 11 10 32 32 H 1.09004 * 109.46347 * 54.59901 * 15 13 9 33 33 H 1.09003 * 109.46933 * 294.60623 * 15 13 9 34 34 H 0.97004 * 119.99780 * 354.72145 * 16 15 13 35 35 H 1.09000 * 109.47140 * 59.99493 * 19 17 16 36 36 H 1.09003 * 109.46979 * 299.99748 * 19 17 16 37 37 H 1.07997 * 126.58286 * 0.02562 * 21 20 19 38 38 H 1.07998 * 126.57457 * 179.97438 * 22 21 20 39 39 H 1.08002 * 125.78698 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3464 0.0006 5 1 1.8913 2.3965 -1.2125 6 1 1.8913 2.3965 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0001 9 7 1.3255 -2.3880 0.0005 10 6 -0.1096 -2.5516 0.2956 11 6 -0.2516 -4.0184 0.7731 12 6 0.7683 -4.7478 -0.1449 13 6 1.9001 -3.7091 -0.2927 14 1 2.7007 -3.9302 0.4132 15 6 2.4454 -3.7338 -1.7221 16 7 3.1293 -5.0069 -1.9620 17 6 3.5992 -5.2984 -3.1910 18 8 3.4563 -4.5063 -4.0984 19 6 4.3021 -6.6083 -3.4380 20 6 4.7264 -6.6863 -4.8820 21 6 5.9020 -6.2632 -5.3804 22 6 5.8766 -6.5271 -6.7692 23 6 4.6875 -7.0962 -7.0362 24 8 3.9923 -7.1842 -5.8904 25 1 -0.4851 0.8401 -0.0004 26 1 -0.4154 -1.8645 1.0845 27 1 -0.7031 -2.3843 -0.6032 28 1 0.0293 -4.1169 1.8216 29 1 -1.2633 -4.3878 0.6049 30 1 0.3224 -4.9729 -1.1137 31 1 1.1382 -5.6560 0.3309 32 1 3.1492 -2.9123 -1.8565 33 1 1.6214 -3.6254 -2.4273 34 1 3.2438 -5.6403 -1.2362 35 1 3.6249 -7.4322 -3.2128 36 1 5.1814 -6.6752 -2.7973 37 1 6.7100 -5.8091 -4.8262 38 1 6.6616 -6.3129 -7.4794 39 1 4.3474 -7.4224 -8.0080 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753114292.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:19:10 Heat of formation + Delta-G solvation = 0.312466 kcal Electronic energy + Delta-G solvation = -21283.755089 eV Core-core repulsion = 18000.724386 eV Total energy + Delta-G solvation = -3283.030703 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.58348 -39.42076 -37.61428 -34.25706 -33.19948 -32.51544 -32.14783 -29.69378 -28.81473 -27.03352 -24.82030 -23.72785 -21.79388 -21.04368 -20.32930 -20.04958 -19.46593 -17.54311 -17.22256 -16.55106 -15.85650 -15.64849 -15.33569 -14.93286 -14.42126 -14.04671 -13.86604 -13.46174 -13.19470 -12.86174 -12.74228 -12.64300 -12.12672 -11.94186 -11.89218 -11.61999 -11.32547 -10.95125 -10.81365 -10.25549 -10.10352 -9.97161 -9.93495 -9.86094 -9.75538 -9.64943 -8.69758 -8.58692 -8.49313 -6.85659 -5.78082 -3.14785 1.66969 2.57060 2.79614 2.92410 3.38614 3.45209 3.47236 3.55541 4.47589 4.48825 4.90557 4.95400 4.98821 5.14836 5.22219 5.32297 5.39114 5.49431 5.61206 5.75374 5.79886 5.86988 6.02527 6.05438 6.12261 6.22919 6.44132 6.45801 6.53714 6.61069 6.68871 6.79495 7.04587 7.09260 7.50598 7.59719 7.74817 7.78142 8.24103 8.45292 9.16026 9.76677 10.43666 11.33869 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.021534 B = 0.003839 C = 0.003419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1299.956996 B = 7291.779351 C = 8187.542132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.001 4.001 3 Si 0.910 3.090 4 H -0.279 1.279 5 H -0.289 1.289 6 H -0.290 1.290 7 C -0.234 4.234 8 H 0.076 0.924 9 N -0.589 5.589 10 C 0.171 3.829 11 C -0.148 4.148 12 C -0.126 4.126 13 C 0.152 3.848 14 H 0.037 0.963 15 C 0.109 3.891 16 N -0.722 5.722 17 C 0.506 3.494 18 O -0.532 6.532 19 C -0.063 4.063 20 C 0.010 3.990 21 C -0.199 4.199 22 C -0.214 4.214 23 C -0.042 4.042 24 O -0.173 6.173 25 H 0.253 0.747 26 H 0.073 0.927 27 H 0.026 0.974 28 H 0.058 0.942 29 H 0.058 0.942 30 H 0.063 0.937 31 H 0.058 0.942 32 H 0.067 0.933 33 H 0.065 0.935 34 H 0.396 0.604 35 H 0.110 0.890 36 H 0.122 0.878 37 H 0.146 0.854 38 H 0.147 0.853 39 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.798 -16.921 -5.582 19.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.198 4.198 3 Si 0.741 3.259 4 H -0.204 1.204 5 H -0.216 1.216 6 H -0.217 1.217 7 C -0.362 4.362 8 H 0.094 0.906 9 N -0.313 5.313 10 C 0.047 3.953 11 C -0.187 4.187 12 C -0.164 4.164 13 C 0.044 3.956 14 H 0.055 0.945 15 C -0.016 4.016 16 N -0.374 5.374 17 C 0.290 3.710 18 O -0.408 6.408 19 C -0.103 4.103 20 C -0.040 4.040 21 C -0.218 4.218 22 C -0.233 4.233 23 C -0.110 4.110 24 O -0.068 6.068 25 H 0.064 0.936 26 H 0.091 0.909 27 H 0.044 0.956 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.082 0.918 31 H 0.077 0.923 32 H 0.086 0.914 33 H 0.083 0.917 34 H 0.230 0.770 35 H 0.128 0.872 36 H 0.140 0.860 37 H 0.164 0.836 38 H 0.164 0.836 39 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges 7.322 -16.172 -6.175 18.796 hybrid contribution 0.709 0.757 0.046 1.038 sum 8.031 -15.415 -6.129 18.431 Atomic orbital electron populations 1.69945 1.05036 1.25222 1.55900 1.24911 0.95680 0.97888 1.01361 0.86074 0.78929 0.83665 0.77272 1.20364 1.21580 1.21684 1.19031 0.90429 0.82172 1.44617 0.90578 1.44499 1.06170 1.00920 1.79754 1.21465 0.84743 0.90242 0.98886 1.23047 0.97518 0.99551 0.98594 1.22655 0.97087 0.96923 0.99754 1.21127 0.94501 0.88081 0.91941 0.94501 1.22264 0.96516 0.83417 0.99436 1.46095 1.58853 1.21855 1.10549 1.20327 0.79553 0.87964 0.83139 1.90760 1.56894 1.50018 1.43105 1.20137 1.03038 0.97905 0.89186 1.21537 0.91042 1.02068 0.89403 1.21521 0.99197 1.06140 0.94972 1.21788 0.99370 1.05692 0.96423 1.23964 0.92466 1.05302 0.89219 1.83985 1.42456 1.64516 1.15891 0.93630 0.90876 0.95622 0.92306 0.92341 0.91847 0.92331 0.91429 0.91674 0.77043 0.87196 0.86030 0.83618 0.83568 0.78228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.64 10.56 55.49 0.59 -26.06 16 2 C 0.00 -0.03 5.47 -17.44 -0.10 -0.13 16 3 Si 0.91 22.12 29.55 -169.99 -5.02 17.10 16 4 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 5 H -0.29 -7.14 7.11 56.52 0.40 -6.73 16 6 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 7 C -0.23 -6.40 9.71 -15.06 -0.15 -6.54 16 8 H 0.08 2.03 7.83 -52.49 -0.41 1.62 16 9 N -0.59 -14.54 3.13 -162.58 -0.51 -15.04 16 10 C 0.17 4.07 5.42 -2.53 -0.01 4.06 16 11 C -0.15 -2.68 7.09 -24.45 -0.17 -2.86 16 12 C -0.13 -2.05 6.26 -24.76 -0.16 -2.21 16 13 C 0.15 2.94 3.18 -66.96 -0.21 2.73 16 14 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 15 C 0.11 2.08 5.11 -4.04 -0.02 2.06 16 16 N -0.72 -10.31 5.37 -60.30 -0.32 -10.63 16 17 C 0.51 7.70 7.82 -10.99 -0.09 7.62 16 18 O -0.53 -10.95 16.03 5.55 0.09 -10.86 16 19 C -0.06 -0.66 6.23 -29.04 -0.18 -0.84 16 20 C 0.01 0.13 5.81 -35.62 -0.21 -0.07 16 21 C -0.20 -2.49 10.81 -39.70 -0.43 -2.92 16 22 C -0.21 -2.42 10.91 -39.70 -0.43 -2.85 16 23 C -0.04 -0.46 12.09 29.41 0.36 -0.11 16 24 O -0.17 -2.35 10.65 5.70 0.06 -2.29 16 25 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 26 H 0.07 1.93 6.90 -51.93 -0.36 1.57 16 27 H 0.03 0.67 8.07 -51.93 -0.42 0.25 16 28 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 29 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 30 H 0.06 1.04 7.76 -51.93 -0.40 0.63 16 31 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.07 1.48 7.84 -51.93 -0.41 1.08 16 33 H 0.06 1.41 8.01 -51.93 -0.42 0.99 16 34 H 0.40 4.17 8.42 -40.82 -0.34 3.83 16 35 H 0.11 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.12 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.15 1.58 8.06 -52.49 -0.42 1.16 16 38 H 0.15 1.28 8.06 -52.49 -0.42 0.86 16 39 H 0.20 1.37 8.06 -52.49 -0.42 0.95 16 LS Contribution 328.68 15.07 4.95 4.95 Total: -1.00 -34.38 328.68 -7.66 -42.04 By element: Atomic # 1 Polarization: 8.55 SS G_CDS: -5.70 Total: 2.86 kcal Atomic # 6 Polarization: -0.26 SS G_CDS: -1.80 Total: -2.06 kcal Atomic # 7 Polarization: -51.49 SS G_CDS: -0.25 Total: -51.73 kcal Atomic # 8 Polarization: -13.30 SS G_CDS: 0.15 Total: -13.15 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -34.38 -7.66 -42.04 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753114292.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.353 kcal (2) G-P(sol) polarization free energy of solvation -34.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.040 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds