Wall clock time and date at job start Tue Mar 31 2020 00:19:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86803 * 119.99973 * 2 1 4 4 H 1.48503 * 109.47112 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47017 * 300.00238 * 3 2 1 6 6 H 1.48502 * 109.47098 * 59.99899 * 3 2 1 7 7 C 1.38807 * 120.00184 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00346 * 179.97438 * 7 2 1 9 9 N 1.36939 * 119.99940 * 0.02562 * 7 2 1 10 10 C 1.47423 * 125.64808 * 345.71654 * 9 7 2 11 11 C 1.54906 * 104.83394 * 204.16988 * 10 9 7 12 12 C 1.55407 * 101.66315 * 323.07378 * 11 10 9 13 13 C 1.47017 * 125.64876 * 165.76330 * 9 7 2 14 14 H 1.09002 * 109.88372 * 59.32922 * 13 9 7 15 15 C 1.53002 * 109.88734 * 298.31858 * 13 9 7 16 16 N 1.46494 * 109.47650 * 174.60059 * 15 13 9 17 17 C 1.34771 * 120.00463 * 174.71975 * 16 15 13 18 18 O 1.21286 * 119.99559 * 0.02562 * 17 16 15 19 19 C 1.50695 * 120.00604 * 180.02562 * 17 16 15 20 20 C 1.50700 * 109.47347 * 180.02562 * 19 17 16 21 21 C 1.34517 * 125.78845 * 90.00019 * 20 19 17 22 22 C 1.41390 * 106.83451 * 180.02562 * 21 20 19 23 23 C 1.34506 * 106.84421 * 359.97438 * 22 21 20 24 24 O 1.34301 * 125.78642 * 270.34482 * 20 19 17 25 25 H 0.97007 * 120.00258 * 0.02562 * 1 2 3 26 26 H 1.09000 * 110.36804 * 323.00950 * 10 9 7 27 27 H 1.09002 * 110.36504 * 85.21876 * 10 9 7 28 28 H 1.08992 * 111.00627 * 81.06402 * 11 10 9 29 29 H 1.09003 * 111.00759 * 204.92068 * 11 10 9 30 30 H 1.08997 * 110.69762 * 277.04416 * 12 11 10 31 31 H 1.09002 * 110.85266 * 153.69984 * 12 11 10 32 32 H 1.09004 * 109.46347 * 54.59901 * 15 13 9 33 33 H 1.09003 * 109.46933 * 294.60623 * 15 13 9 34 34 H 0.97004 * 119.99780 * 354.72145 * 16 15 13 35 35 H 1.09000 * 109.47140 * 59.99493 * 19 17 16 36 36 H 1.09003 * 109.46979 * 299.99748 * 19 17 16 37 37 H 1.07997 * 126.58286 * 0.02562 * 21 20 19 38 38 H 1.07998 * 126.57457 * 179.97438 * 22 21 20 39 39 H 1.08002 * 125.78698 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3464 0.0006 5 1 1.8913 2.3965 -1.2125 6 1 1.8913 2.3965 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0001 9 7 1.3255 -2.3880 0.0005 10 6 -0.1096 -2.5516 0.2956 11 6 -0.2516 -4.0184 0.7731 12 6 0.7683 -4.7478 -0.1449 13 6 1.9001 -3.7091 -0.2927 14 1 2.7007 -3.9302 0.4132 15 6 2.4454 -3.7338 -1.7221 16 7 3.1293 -5.0069 -1.9620 17 6 3.5992 -5.2984 -3.1910 18 8 3.4563 -4.5063 -4.0984 19 6 4.3021 -6.6083 -3.4380 20 6 4.7264 -6.6863 -4.8820 21 6 5.9020 -6.2632 -5.3804 22 6 5.8766 -6.5271 -6.7692 23 6 4.6875 -7.0962 -7.0362 24 8 3.9923 -7.1842 -5.8904 25 1 -0.4851 0.8401 -0.0004 26 1 -0.4154 -1.8645 1.0845 27 1 -0.7031 -2.3843 -0.6032 28 1 0.0293 -4.1169 1.8216 29 1 -1.2633 -4.3878 0.6049 30 1 0.3224 -4.9729 -1.1137 31 1 1.1382 -5.6560 0.3309 32 1 3.1492 -2.9123 -1.8565 33 1 1.6214 -3.6254 -2.4273 34 1 3.2438 -5.6403 -1.2362 35 1 3.6249 -7.4322 -3.2128 36 1 5.1814 -6.6752 -2.7973 37 1 6.7100 -5.8091 -4.8262 38 1 6.6616 -6.3129 -7.4794 39 1 4.3474 -7.4224 -8.0080 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753114292.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:19:08 Heat of formation + Delta-G solvation = -23.802178 kcal Electronic energy + Delta-G solvation = -21284.800778 eV Core-core repulsion = 18000.724386 eV Total energy + Delta-G solvation = -3284.076392 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -43.46188 -40.74200 -39.23950 -35.75049 -34.41805 -34.10360 -33.09577 -31.41426 -30.40984 -28.06852 -26.65510 -25.35057 -22.67396 -22.22045 -21.88840 -21.33317 -20.92486 -18.94085 -18.34914 -18.03656 -17.27511 -16.70242 -16.63060 -16.53763 -15.89718 -15.63044 -15.20216 -14.83750 -14.49838 -13.98067 -13.75863 -13.72055 -13.64544 -13.54055 -13.38481 -13.00212 -12.86516 -12.70699 -12.61466 -11.99016 -11.87857 -11.71660 -11.48864 -11.39284 -11.06078 -10.81035 -10.70010 -10.07068 -9.37789 -8.86648 -7.89632 -5.27056 0.77038 1.42791 1.45034 1.54187 1.63261 1.68582 2.06643 2.36338 2.51578 3.30510 3.62553 3.72364 3.93400 4.00200 4.05854 4.15813 4.19210 4.28339 4.40063 4.47410 4.50836 4.55455 4.73964 4.93029 4.97929 5.01299 5.02628 5.15775 5.21739 5.24930 5.37922 5.47163 5.58938 5.63104 5.66465 5.77930 6.21783 6.22455 6.60942 7.08163 7.30720 7.75748 8.41242 9.21458 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.021534 B = 0.003839 C = 0.003419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1299.956996 B = 7291.779351 C = 8187.542132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C -0.061 4.061 3 Si 0.971 3.029 4 H -0.266 1.266 5 H -0.297 1.297 6 H -0.288 1.288 7 C -0.238 4.238 8 H 0.078 0.922 9 N -0.612 5.612 10 C 0.172 3.828 11 C -0.133 4.133 12 C -0.112 4.112 13 C 0.148 3.852 14 H 0.057 0.943 15 C 0.129 3.871 16 N -0.703 5.703 17 C 0.504 3.496 18 O -0.593 6.593 19 C -0.049 4.049 20 C -0.017 4.017 21 C -0.215 4.215 22 C -0.231 4.231 23 C -0.046 4.046 24 O -0.194 6.194 25 H 0.247 0.753 26 H 0.036 0.964 27 H -0.012 1.012 28 H 0.072 0.928 29 H 0.081 0.919 30 H 0.062 0.938 31 H 0.110 0.890 32 H 0.031 0.969 33 H 0.031 0.969 34 H 0.420 0.580 35 H 0.143 0.857 36 H 0.161 0.839 37 H 0.156 0.844 38 H 0.167 0.833 39 H 0.235 0.765 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.242 -19.770 -5.035 22.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.254 4.254 3 Si 0.799 3.201 4 H -0.190 1.190 5 H -0.224 1.224 6 H -0.214 1.214 7 C -0.368 4.368 8 H 0.096 0.904 9 N -0.337 5.337 10 C 0.047 3.953 11 C -0.172 4.172 12 C -0.150 4.150 13 C 0.041 3.959 14 H 0.074 0.926 15 C 0.002 3.998 16 N -0.356 5.356 17 C 0.291 3.709 18 O -0.473 6.473 19 C -0.088 4.088 20 C -0.067 4.067 21 C -0.234 4.234 22 C -0.249 4.249 23 C -0.113 4.113 24 O -0.090 6.090 25 H 0.056 0.944 26 H 0.055 0.945 27 H 0.007 0.993 28 H 0.091 0.909 29 H 0.100 0.900 30 H 0.081 0.919 31 H 0.128 0.872 32 H 0.049 0.951 33 H 0.050 0.950 34 H 0.258 0.742 35 H 0.161 0.839 36 H 0.179 0.821 37 H 0.174 0.826 38 H 0.185 0.815 39 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges 8.803 -19.095 -5.591 21.758 hybrid contribution 0.310 1.602 -0.191 1.643 sum 9.113 -17.494 -5.782 20.555 Atomic orbital electron populations 1.70148 1.06325 1.25284 1.57689 1.25680 0.96503 1.01026 1.02232 0.85124 0.78375 0.79868 0.76690 1.19045 1.22385 1.21434 1.19352 0.90794 0.83617 1.43003 0.90423 1.44778 1.06608 1.02176 1.80125 1.21278 0.84101 0.93685 0.96231 1.22910 0.99633 0.95130 0.99513 1.22655 0.95043 0.97446 0.99830 1.21365 0.96166 0.86579 0.91821 0.92553 1.21666 0.94793 0.84750 0.98590 1.45767 1.57909 1.20445 1.11500 1.21231 0.78509 0.89037 0.82114 1.90741 1.59183 1.52399 1.44999 1.20234 1.04705 0.95310 0.88567 1.22027 0.91370 1.02821 0.90449 1.21894 0.99669 1.05962 0.95881 1.22176 1.00307 1.05903 0.96554 1.24747 0.92269 1.04424 0.89810 1.83974 1.43306 1.64980 1.16763 0.94356 0.94536 0.99344 0.90947 0.90049 0.91924 0.87198 0.95095 0.95013 0.74186 0.83887 0.82113 0.82608 0.81538 0.74848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.59 10.56 21.65 0.23 -57.36 16 2 C -0.06 -3.50 5.47 84.86 0.46 -3.04 16 3 Si 0.97 46.69 29.55 68.60 2.03 48.71 16 4 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 5 H -0.30 -14.50 7.11 99.48 0.71 -13.79 16 6 H -0.29 -13.59 7.11 99.48 0.71 -12.89 16 7 C -0.24 -13.31 9.71 84.03 0.82 -12.50 16 8 H 0.08 4.20 7.83 -2.91 -0.02 4.18 16 9 N -0.61 -30.64 3.13 -668.28 -2.09 -32.73 16 10 C 0.17 8.38 5.42 86.85 0.47 8.85 16 11 C -0.13 -4.52 7.09 32.07 0.23 -4.29 16 12 C -0.11 -3.26 6.26 31.87 0.20 -3.06 16 13 C 0.15 5.49 3.18 45.34 0.14 5.64 16 14 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 15 C 0.13 4.92 5.11 86.38 0.44 5.36 16 16 N -0.70 -18.52 5.37 -463.07 -2.49 -21.01 16 17 C 0.50 14.57 7.82 87.66 0.69 15.26 16 18 O -0.59 -24.74 16.03 -3.05 -0.05 -24.79 16 19 C -0.05 -0.87 6.23 29.10 0.18 -0.69 16 20 C -0.02 -0.40 5.81 24.83 0.14 -0.26 16 21 C -0.21 -5.08 10.81 22.19 0.24 -4.85 16 22 C -0.23 -4.89 10.91 22.19 0.24 -4.65 16 23 C -0.05 -0.93 12.09 66.97 0.81 -0.12 16 24 O -0.19 -5.01 10.65 -2.52 -0.03 -5.04 16 25 H 0.25 14.64 8.31 -92.70 -0.77 13.87 16 26 H 0.04 2.01 6.90 -2.39 -0.02 1.99 16 27 H -0.01 -0.63 8.07 -2.39 -0.02 -0.65 16 28 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 29 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 30 H 0.06 1.86 7.76 -2.39 -0.02 1.84 16 31 H 0.11 2.17 8.14 -2.39 -0.02 2.15 16 32 H 0.03 1.40 7.84 -2.38 -0.02 1.38 16 33 H 0.03 1.42 8.01 -2.39 -0.02 1.40 16 34 H 0.42 7.04 8.42 -92.71 -0.78 6.26 16 35 H 0.14 1.62 8.14 -2.39 -0.02 1.60 16 36 H 0.16 1.57 8.14 -2.39 -0.02 1.55 16 37 H 0.16 3.16 8.06 -2.91 -0.02 3.14 16 38 H 0.17 2.64 8.06 -2.91 -0.02 2.62 16 39 H 0.24 2.68 8.06 -2.91 -0.02 2.65 16 Total: -1.00 -81.04 328.68 2.94 -78.10 By element: Atomic # 1 Polarization: 12.19 SS G_CDS: 0.27 Total: 12.46 kcal Atomic # 6 Polarization: -3.41 SS G_CDS: 5.07 Total: 1.65 kcal Atomic # 7 Polarization: -106.75 SS G_CDS: -4.35 Total: -111.10 kcal Atomic # 8 Polarization: -29.75 SS G_CDS: -0.08 Total: -29.83 kcal Atomic # 14 Polarization: 46.69 SS G_CDS: 2.03 Total: 48.71 kcal Total: -81.04 2.94 -78.10 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753114292.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.300 kcal (2) G-P(sol) polarization free energy of solvation -81.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.102 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds