Wall clock time and date at job start Tue Mar 31 2020 00:33:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86802 * 120.00271 * 2 1 4 4 H 1.48504 * 109.46854 * 240.27604 * 3 2 1 5 5 H 1.48499 * 109.46710 * 0.27526 * 3 2 1 6 6 H 1.48498 * 109.46903 * 120.27321 * 3 2 1 7 7 C 1.38818 * 119.99730 * 180.27678 * 2 1 3 8 8 H 1.07997 * 119.99660 * 179.72309 * 7 2 1 9 9 N 1.36938 * 119.99898 * 359.72180 * 7 2 1 10 10 C 1.46496 * 120.00051 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.47361 * 174.90564 * 10 9 7 12 12 N 1.46508 * 110.01317 * 55.15199 * 11 10 9 13 13 C 1.34776 * 119.99573 * 65.15890 * 12 11 10 14 14 O 1.21612 * 120.00565 * 354.90084 * 13 12 11 15 15 C 1.47383 * 119.99799 * 174.90709 * 13 12 11 16 16 C 1.47020 * 127.19262 * 179.70636 * 15 13 12 17 17 C 1.34175 * 105.95244 * 179.88570 * 16 15 13 18 18 O 1.34220 * 109.12590 * 0.37644 * 17 16 15 19 19 C 1.33656 * 110.90464 * 359.74964 * 18 17 16 20 20 C 1.54262 * 110.03519 * 293.71265 * 11 10 9 21 21 C 1.54892 * 104.19640 * 217.10317 * 20 11 10 22 22 C 1.54890 * 102.74662 * 37.94287 * 21 20 11 23 23 C 1.53875 * 110.03373 * 176.54103 * 11 10 9 24 24 H 0.96996 * 119.99754 * 359.72543 * 1 2 3 25 25 H 0.96998 * 119.99849 * 0.02562 * 9 7 2 26 26 H 1.08996 * 109.47548 * 294.91421 * 10 9 7 27 27 H 1.09000 * 109.46673 * 54.91041 * 10 9 7 28 28 H 0.96993 * 120.00090 * 245.15354 * 12 11 10 29 29 H 1.07997 * 127.02409 * 0.02562 * 16 15 13 30 30 H 1.07997 * 125.43711 * 180.12394 * 17 16 15 31 31 H 1.07996 * 125.79410 * 180.02562 * 19 18 17 32 32 H 1.09003 * 110.48348 * 335.77885 * 20 11 10 33 33 H 1.09003 * 110.48581 * 98.42068 * 20 11 10 34 34 H 1.08998 * 110.75189 * 279.62623 * 21 20 11 35 35 H 1.08993 * 110.75422 * 156.25510 * 21 20 11 36 36 H 1.09005 * 110.48115 * 203.38498 * 22 21 20 37 37 H 1.08996 * 110.48771 * 80.74016 * 22 21 20 38 38 H 1.08995 * 110.03593 * 238.57188 * 23 11 10 39 39 H 1.09002 * 110.02987 * 0.02562 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.0990 1.6992 -1.2159 5 1 1.2853 2.7464 0.0067 6 1 3.1090 1.6934 1.2091 7 6 2.0103 -1.2022 -0.0058 8 1 3.0902 -1.2022 -0.0103 9 7 1.3255 -2.3881 -0.0058 10 6 2.0579 -3.6568 -0.0125 11 6 1.0692 -4.8172 0.1171 12 7 0.0562 -4.7331 -0.9381 13 6 0.4145 -4.8790 -2.2291 14 8 1.5888 -4.9877 -2.5259 15 6 -0.6171 -4.9067 -3.2814 16 6 -0.4061 -5.0512 -4.7292 17 6 -1.6273 -5.0242 -5.2844 18 8 -2.5462 -4.8702 -4.3183 19 6 -1.9668 -4.7978 -3.1161 20 6 0.3935 -4.7835 1.5035 21 6 0.2536 -6.2758 1.8942 22 6 1.5687 -6.8942 1.3583 23 6 1.8163 -6.1592 0.0247 24 1 -0.4849 0.8400 0.0040 25 1 0.3555 -2.3880 -0.0021 26 1 2.6102 -3.7527 -0.9472 27 1 2.7550 -3.6783 0.8252 28 1 -0.8721 -4.5724 -0.7075 29 1 0.5387 -5.1594 -5.2411 30 1 -1.8370 -5.1085 -6.3404 31 1 -2.4800 -4.6745 -2.1739 32 1 1.0230 -4.2585 2.2219 33 1 -0.5874 -4.3126 1.4385 34 1 -0.6114 -6.7237 1.4051 35 1 0.1874 -6.3871 2.9765 36 1 1.4453 -7.9636 1.1872 37 1 2.3879 -6.7100 2.0533 38 1 1.4248 -6.7483 -0.8046 39 1 2.8834 -5.9838 -0.1120 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753499590.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:33:34 Heat of formation + Delta-G solvation = -13.050547 kcal Electronic energy + Delta-G solvation = -22206.723629 eV Core-core repulsion = 18923.113462 eV Total energy + Delta-G solvation = -3283.610167 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.42442 -39.88649 -37.35644 -34.25901 -33.27495 -32.56065 -31.00236 -29.70629 -28.59392 -27.83427 -24.51660 -23.48727 -22.13682 -21.37910 -20.67721 -20.11851 -18.77586 -18.20885 -17.03298 -16.04242 -15.96621 -15.87185 -14.99749 -14.72273 -14.43902 -14.21001 -13.93811 -13.23579 -13.15253 -12.93791 -12.83931 -12.65996 -12.30056 -11.83144 -11.54820 -11.12027 -10.93124 -10.86815 -10.77418 -10.66406 -10.43307 -10.39182 -10.02533 -9.68281 -9.63974 -9.45766 -8.78062 -8.72941 -8.49319 -6.80011 -5.70050 -2.95737 1.51749 2.19267 2.98495 3.48408 3.51326 3.52428 3.54341 3.77753 4.61993 4.66136 4.75068 4.85179 4.87444 5.06926 5.22159 5.55502 5.58226 5.65798 5.68318 5.72341 5.74257 5.81655 5.92851 5.99417 6.00159 6.06062 6.22747 6.33190 6.35944 6.44382 6.52521 6.57577 6.63929 6.96851 7.02368 7.18471 7.77205 7.95038 8.49895 8.69041 9.61153 10.20043 10.56055 11.53312 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.011792 B = 0.006762 C = 0.004883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2373.921751 B = 4139.930823 C = 5732.239378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.016 4.016 3 Si 0.906 3.094 4 H -0.287 1.287 5 H -0.292 1.292 6 H -0.287 1.287 7 C -0.230 4.230 8 H 0.068 0.932 9 N -0.725 5.725 10 C 0.145 3.855 11 C 0.171 3.829 12 N -0.707 5.707 13 C 0.591 3.409 14 O -0.530 6.530 15 C -0.225 4.225 16 C -0.164 4.164 17 C -0.048 4.048 18 O -0.178 6.178 19 C 0.017 3.983 20 C -0.117 4.117 21 C -0.125 4.125 22 C -0.124 4.124 23 C -0.117 4.117 24 H 0.253 0.747 25 H 0.381 0.619 26 H 0.038 0.962 27 H 0.026 0.974 28 H 0.393 0.607 29 H 0.157 0.843 30 H 0.206 0.794 31 H 0.210 0.790 32 H 0.086 0.914 33 H 0.071 0.929 34 H 0.063 0.937 35 H 0.065 0.935 36 H 0.060 0.940 37 H 0.066 0.934 38 H 0.066 0.934 39 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.371 -15.292 -2.900 16.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.587 5.587 2 C -0.212 4.212 3 Si 0.737 3.263 4 H -0.214 1.214 5 H -0.218 1.218 6 H -0.214 1.214 7 C -0.362 4.362 8 H 0.086 0.914 9 N -0.369 5.369 10 C 0.016 3.984 11 C 0.085 3.915 12 N -0.358 5.358 13 C 0.378 3.622 14 O -0.407 6.407 15 C -0.229 4.229 16 C -0.183 4.183 17 C -0.114 4.114 18 O -0.073 6.073 19 C -0.053 4.053 20 C -0.155 4.155 21 C -0.163 4.163 22 C -0.162 4.162 23 C -0.156 4.156 24 H 0.063 0.937 25 H 0.215 0.785 26 H 0.056 0.944 27 H 0.044 0.956 28 H 0.227 0.773 29 H 0.175 0.825 30 H 0.222 0.778 31 H 0.226 0.774 32 H 0.105 0.895 33 H 0.090 0.910 34 H 0.081 0.919 35 H 0.083 0.917 36 H 0.079 0.921 37 H 0.084 0.916 38 H 0.085 0.915 39 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -4.670 -15.244 -3.167 16.255 hybrid contribution -0.086 1.233 0.025 1.237 sum -4.756 -14.011 -3.142 15.126 Atomic orbital electron populations 1.69635 1.05011 1.25468 1.58543 1.24675 0.95520 0.97469 1.03505 0.86280 0.78511 0.83705 0.77807 1.21426 1.21788 1.21371 1.19205 0.90997 0.84267 1.41705 0.91429 1.42181 1.05608 0.99716 1.89424 1.21169 0.93057 0.85065 0.99083 1.21250 0.88628 0.95531 0.86066 1.45879 1.11083 1.73446 1.05386 1.17098 0.87442 0.76141 0.81533 1.90748 1.18196 1.49563 1.82185 1.21687 0.93488 1.12628 0.95104 1.22778 0.98886 1.04761 0.91903 1.23867 0.86708 1.07182 0.93656 1.83765 1.38058 1.70450 1.15038 1.24431 0.92177 1.00832 0.87909 1.22589 1.01381 0.96063 0.95468 1.22534 0.97584 0.95837 1.00314 1.22388 0.97731 0.99013 0.97070 1.22412 1.01158 0.94857 0.97156 0.93713 0.78535 0.94425 0.95610 0.77303 0.82516 0.77756 0.77371 0.89545 0.91025 0.91853 0.91651 0.92083 0.91567 0.91494 0.90894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -28.46 13.06 55.49 0.72 -27.73 16 2 C -0.02 -0.48 5.50 -17.43 -0.10 -0.58 16 3 Si 0.91 23.11 29.55 -169.99 -5.02 18.09 16 4 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 5 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 6 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 7 C -0.23 -6.67 9.99 -15.06 -0.15 -6.82 16 8 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 9 N -0.73 -18.71 5.27 -59.91 -0.32 -19.03 16 10 C 0.14 3.15 4.64 -4.04 -0.02 3.13 16 11 C 0.17 2.87 0.57 -130.70 -0.07 2.80 16 12 N -0.71 -11.44 4.49 -47.64 -0.21 -11.65 16 13 C 0.59 10.74 6.85 -12.54 -0.09 10.66 16 14 O -0.53 -11.42 14.25 5.27 0.08 -11.34 16 15 C -0.22 -3.49 6.31 -103.28 -0.65 -4.14 16 16 C -0.16 -2.28 11.01 -37.46 -0.41 -2.70 16 17 C -0.05 -0.54 12.03 29.30 0.35 -0.19 16 18 O -0.18 -2.18 10.52 7.63 0.08 -2.10 16 19 C 0.02 0.21 11.61 30.07 0.35 0.56 16 20 C -0.12 -1.72 5.74 -25.07 -0.14 -1.86 16 21 C -0.13 -1.45 6.91 -24.74 -0.17 -1.62 16 22 C -0.12 -1.49 6.83 -25.07 -0.17 -1.66 16 23 C -0.12 -1.76 5.22 -25.61 -0.13 -1.89 16 24 H 0.25 7.48 8.31 -40.82 -0.34 7.15 16 25 H 0.38 10.02 7.19 -40.82 -0.29 9.73 16 26 H 0.04 0.93 6.55 -51.93 -0.34 0.59 16 27 H 0.03 0.56 8.04 -51.93 -0.42 0.14 16 28 H 0.39 5.36 7.22 -40.82 -0.29 5.06 16 29 H 0.16 2.09 8.06 -52.49 -0.42 1.67 16 30 H 0.21 1.39 8.06 -52.49 -0.42 0.97 16 31 H 0.21 1.86 7.48 -52.49 -0.39 1.47 16 32 H 0.09 1.39 7.79 -51.93 -0.40 0.99 16 33 H 0.07 1.04 7.70 -51.93 -0.40 0.64 16 34 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.07 1.05 6.99 -51.93 -0.36 0.68 16 39 H 0.07 1.17 7.67 -51.93 -0.40 0.77 16 LS Contribution 323.15 15.07 4.87 4.87 Total: -1.00 -34.91 323.15 -6.60 -41.51 By element: Atomic # 1 Polarization: 17.10 SS G_CDS: -5.39 Total: 11.71 kcal Atomic # 6 Polarization: -2.92 SS G_CDS: -1.41 Total: -4.32 kcal Atomic # 7 Polarization: -58.60 SS G_CDS: 0.19 Total: -58.41 kcal Atomic # 8 Polarization: -13.60 SS G_CDS: 0.16 Total: -13.44 kcal Atomic # 14 Polarization: 23.11 SS G_CDS: -5.02 Total: 18.09 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -34.91 -6.60 -41.51 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753499590.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.457 kcal (2) G-P(sol) polarization free energy of solvation -34.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.508 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds