Wall clock time and date at job start Tue Mar 31 2020 00:33:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86802 * 120.00271 * 2 1 4 4 H 1.48504 * 109.46854 * 240.27604 * 3 2 1 5 5 H 1.48499 * 109.46710 * 0.27526 * 3 2 1 6 6 H 1.48498 * 109.46903 * 120.27321 * 3 2 1 7 7 C 1.38818 * 119.99730 * 180.27678 * 2 1 3 8 8 H 1.07997 * 119.99660 * 179.72309 * 7 2 1 9 9 N 1.36938 * 119.99898 * 359.72180 * 7 2 1 10 10 C 1.46496 * 120.00051 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.47361 * 174.90564 * 10 9 7 12 12 N 1.46508 * 110.01317 * 55.15199 * 11 10 9 13 13 C 1.34776 * 119.99573 * 65.15890 * 12 11 10 14 14 O 1.21612 * 120.00565 * 354.90084 * 13 12 11 15 15 C 1.47383 * 119.99799 * 174.90709 * 13 12 11 16 16 C 1.47020 * 127.19262 * 179.70636 * 15 13 12 17 17 C 1.34175 * 105.95244 * 179.88570 * 16 15 13 18 18 O 1.34220 * 109.12590 * 0.37644 * 17 16 15 19 19 C 1.33656 * 110.90464 * 359.74964 * 18 17 16 20 20 C 1.54262 * 110.03519 * 293.71265 * 11 10 9 21 21 C 1.54892 * 104.19640 * 217.10317 * 20 11 10 22 22 C 1.54890 * 102.74662 * 37.94287 * 21 20 11 23 23 C 1.53875 * 110.03373 * 176.54103 * 11 10 9 24 24 H 0.96996 * 119.99754 * 359.72543 * 1 2 3 25 25 H 0.96998 * 119.99849 * 0.02562 * 9 7 2 26 26 H 1.08996 * 109.47548 * 294.91421 * 10 9 7 27 27 H 1.09000 * 109.46673 * 54.91041 * 10 9 7 28 28 H 0.96993 * 120.00090 * 245.15354 * 12 11 10 29 29 H 1.07997 * 127.02409 * 0.02562 * 16 15 13 30 30 H 1.07997 * 125.43711 * 180.12394 * 17 16 15 31 31 H 1.07996 * 125.79410 * 180.02562 * 19 18 17 32 32 H 1.09003 * 110.48348 * 335.77885 * 20 11 10 33 33 H 1.09003 * 110.48581 * 98.42068 * 20 11 10 34 34 H 1.08998 * 110.75189 * 279.62623 * 21 20 11 35 35 H 1.08993 * 110.75422 * 156.25510 * 21 20 11 36 36 H 1.09005 * 110.48115 * 203.38498 * 22 21 20 37 37 H 1.08996 * 110.48771 * 80.74016 * 22 21 20 38 38 H 1.08995 * 110.03593 * 238.57188 * 23 11 10 39 39 H 1.09002 * 110.02987 * 0.02562 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.0990 1.6992 -1.2159 5 1 1.2853 2.7464 0.0067 6 1 3.1090 1.6934 1.2091 7 6 2.0103 -1.2022 -0.0058 8 1 3.0902 -1.2022 -0.0103 9 7 1.3255 -2.3881 -0.0058 10 6 2.0579 -3.6568 -0.0125 11 6 1.0692 -4.8172 0.1171 12 7 0.0562 -4.7331 -0.9381 13 6 0.4145 -4.8790 -2.2291 14 8 1.5888 -4.9877 -2.5259 15 6 -0.6171 -4.9067 -3.2814 16 6 -0.4061 -5.0512 -4.7292 17 6 -1.6273 -5.0242 -5.2844 18 8 -2.5462 -4.8702 -4.3183 19 6 -1.9668 -4.7978 -3.1161 20 6 0.3935 -4.7835 1.5035 21 6 0.2536 -6.2758 1.8942 22 6 1.5687 -6.8942 1.3583 23 6 1.8163 -6.1592 0.0247 24 1 -0.4849 0.8400 0.0040 25 1 0.3555 -2.3880 -0.0021 26 1 2.6102 -3.7527 -0.9472 27 1 2.7550 -3.6783 0.8252 28 1 -0.8721 -4.5724 -0.7075 29 1 0.5387 -5.1594 -5.2411 30 1 -1.8370 -5.1085 -6.3404 31 1 -2.4800 -4.6745 -2.1739 32 1 1.0230 -4.2585 2.2219 33 1 -0.5874 -4.3126 1.4385 34 1 -0.6114 -6.7237 1.4051 35 1 0.1874 -6.3871 2.9765 36 1 1.4453 -7.9636 1.1872 37 1 2.3879 -6.7100 2.0533 38 1 1.4248 -6.7483 -0.8046 39 1 2.8834 -5.9838 -0.1120 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753499590.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:33:33 Heat of formation + Delta-G solvation = -37.663875 kcal Electronic energy + Delta-G solvation = -22207.790943 eV Core-core repulsion = 18923.113462 eV Total energy + Delta-G solvation = -3284.677481 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -43.42974 -41.25132 -38.70515 -36.17747 -34.67369 -33.72165 -32.92727 -30.84788 -29.76838 -29.33217 -26.36165 -24.75803 -23.95333 -22.36561 -21.79651 -21.27059 -20.21273 -19.30620 -19.11672 -17.33569 -17.08724 -17.04480 -16.53618 -16.16681 -15.80682 -15.59339 -15.40480 -15.02015 -14.54889 -14.54375 -14.08320 -13.83770 -13.55266 -13.30251 -13.21285 -12.80169 -12.68113 -12.27002 -12.21118 -11.98663 -11.90227 -11.77755 -11.72717 -11.39535 -11.09651 -10.79203 -10.74624 -9.98536 -9.68762 -8.96053 -7.96131 -5.22281 0.43139 1.16816 1.43413 1.46614 1.52515 2.03846 2.25146 2.45860 2.54664 3.35920 3.51016 3.71527 3.72759 3.80955 3.92083 4.17884 4.18474 4.40736 4.51692 4.54385 4.62639 4.69846 4.76684 4.81977 4.89140 4.92915 5.03892 5.10162 5.11323 5.20903 5.26539 5.34558 5.36676 5.45709 5.50667 5.73223 6.01335 6.26546 6.65296 7.33551 7.34591 8.08096 8.37692 9.26651 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.011792 B = 0.006762 C = 0.004883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2373.921751 B = 4139.930823 C = 5732.239378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.962 5.962 2 C -0.068 4.068 3 Si 0.969 3.031 4 H -0.287 1.287 5 H -0.289 1.289 6 H -0.277 1.277 7 C -0.248 4.248 8 H 0.063 0.937 9 N -0.728 5.728 10 C 0.147 3.853 11 C 0.173 3.827 12 N -0.698 5.698 13 C 0.584 3.416 14 O -0.577 6.577 15 C -0.269 4.269 16 C -0.202 4.202 17 C -0.022 4.022 18 O -0.176 6.176 19 C 0.039 3.961 20 C -0.114 4.114 21 C -0.112 4.112 22 C -0.117 4.117 23 C -0.112 4.112 24 H 0.252 0.748 25 H 0.378 0.622 26 H 0.005 0.995 27 H 0.025 0.975 28 H 0.406 0.594 29 H 0.150 0.850 30 H 0.251 0.749 31 H 0.243 0.757 32 H 0.069 0.931 33 H 0.074 0.926 34 H 0.080 0.920 35 H 0.086 0.914 36 H 0.082 0.918 37 H 0.071 0.929 38 H 0.059 0.941 39 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.092 -16.025 -2.487 17.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.612 5.612 2 C -0.261 4.261 3 Si 0.798 3.202 4 H -0.214 1.214 5 H -0.215 1.215 6 H -0.203 1.203 7 C -0.380 4.380 8 H 0.081 0.919 9 N -0.371 5.371 10 C 0.019 3.981 11 C 0.087 3.913 12 N -0.349 5.349 13 C 0.373 3.627 14 O -0.458 6.458 15 C -0.273 4.273 16 C -0.221 4.221 17 C -0.087 4.087 18 O -0.070 6.070 19 C -0.031 4.031 20 C -0.152 4.152 21 C -0.149 4.149 22 C -0.155 4.155 23 C -0.151 4.151 24 H 0.061 0.939 25 H 0.210 0.790 26 H 0.022 0.978 27 H 0.043 0.957 28 H 0.242 0.758 29 H 0.168 0.832 30 H 0.267 0.733 31 H 0.259 0.741 32 H 0.088 0.912 33 H 0.093 0.907 34 H 0.098 0.902 35 H 0.105 0.895 36 H 0.101 0.899 37 H 0.090 0.910 38 H 0.078 0.922 39 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -6.408 -15.999 -2.737 17.451 hybrid contribution 0.468 1.459 -0.172 1.542 sum -5.941 -14.540 -2.909 15.974 Atomic orbital electron populations 1.69765 1.06122 1.26021 1.59299 1.25434 0.96501 1.00522 1.03642 0.85283 0.77368 0.79613 0.77917 1.21368 1.21492 1.20255 1.19522 0.91143 0.85790 1.41575 0.91945 1.42230 1.05464 1.00261 1.89153 1.21200 0.94106 0.85681 0.97119 1.21199 0.88262 0.94196 0.87658 1.45804 1.11618 1.72658 1.04836 1.17591 0.87494 0.75179 0.82441 1.90712 1.20229 1.51927 1.82946 1.21696 0.94339 1.16031 0.95262 1.22939 1.00122 1.07358 0.91712 1.24605 0.85265 1.03882 0.94998 1.83819 1.38132 1.69928 1.15137 1.24959 0.91085 0.98009 0.89082 1.22543 1.00703 0.98656 0.93320 1.22499 0.97796 0.92832 1.01771 1.22380 0.98308 0.99840 0.94934 1.22335 0.99628 0.94084 0.99061 0.93946 0.78964 0.97757 0.95745 0.75755 0.83197 0.73329 0.74091 0.91212 0.90745 0.90180 0.89533 0.89888 0.91040 0.92234 0.92794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -58.63 13.06 21.65 0.28 -58.35 16 2 C -0.07 -4.03 5.50 84.86 0.47 -3.56 16 3 Si 0.97 47.74 29.55 68.60 2.03 49.77 16 4 H -0.29 -14.03 7.11 99.48 0.71 -13.32 16 5 H -0.29 -14.02 7.11 99.48 0.71 -13.32 16 6 H -0.28 -13.07 7.11 99.48 0.71 -12.37 16 7 C -0.25 -14.69 9.99 84.03 0.84 -13.85 16 8 H 0.06 3.67 7.83 -2.91 -0.02 3.65 16 9 N -0.73 -38.62 5.27 -343.46 -1.81 -40.43 16 10 C 0.15 6.67 4.64 86.38 0.40 7.07 16 11 C 0.17 5.89 0.57 4.32 0.00 5.90 16 12 N -0.70 -22.78 4.49 -422.89 -1.90 -24.67 16 13 C 0.58 21.98 6.85 86.65 0.59 22.57 16 14 O -0.58 -26.47 14.25 -4.07 -0.06 -26.53 16 15 C -0.27 -8.39 6.31 -18.99 -0.12 -8.51 16 16 C -0.20 -5.64 11.01 23.65 0.26 -5.38 16 17 C -0.02 -0.44 12.03 66.89 0.80 0.36 16 18 O -0.18 -3.84 10.52 4.39 0.05 -3.79 16 19 C 0.04 0.90 11.61 67.39 0.78 1.68 16 20 C -0.11 -3.24 5.74 31.67 0.18 -3.05 16 21 C -0.11 -2.26 6.91 31.89 0.22 -2.04 16 22 C -0.12 -2.56 6.83 31.67 0.22 -2.34 16 23 C -0.11 -3.40 5.22 31.32 0.16 -3.24 16 24 H 0.25 14.87 8.31 -92.71 -0.77 14.10 16 25 H 0.38 20.25 7.19 -92.71 -0.67 19.58 16 26 H 0.00 0.24 6.55 -2.39 -0.02 0.22 16 27 H 0.02 1.11 8.04 -2.39 -0.02 1.09 16 28 H 0.41 10.75 7.22 -92.71 -0.67 10.08 16 29 H 0.15 4.23 8.06 -2.91 -0.02 4.21 16 30 H 0.25 2.45 8.06 -2.91 -0.02 2.42 16 31 H 0.24 3.62 7.48 -2.91 -0.02 3.59 16 32 H 0.07 2.22 7.79 -2.39 -0.02 2.20 16 33 H 0.07 2.06 7.70 -2.39 -0.02 2.04 16 34 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 35 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 36 H 0.08 1.50 8.14 -2.38 -0.02 1.48 16 37 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 38 H 0.06 1.89 6.99 -2.39 -0.02 1.87 16 39 H 0.05 1.81 7.67 -2.39 -0.02 1.79 16 Total: -1.00 -77.89 323.15 3.14 -74.75 By element: Atomic # 1 Polarization: 33.90 SS G_CDS: -0.26 Total: 33.64 kcal Atomic # 6 Polarization: -9.20 SS G_CDS: 4.81 Total: -4.39 kcal Atomic # 7 Polarization: -120.02 SS G_CDS: -3.43 Total: -123.45 kcal Atomic # 8 Polarization: -30.30 SS G_CDS: -0.01 Total: -30.32 kcal Atomic # 14 Polarization: 47.74 SS G_CDS: 2.03 Total: 49.77 kcal Total: -77.89 3.14 -74.75 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753499590.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.085 kcal (2) G-P(sol) polarization free energy of solvation -77.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.749 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds