Wall clock time and date at job start Tue Mar 31 2020 00:32:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31608 * 1 3 3 Si 1.86806 * 120.00071 * 2 1 4 4 H 1.48503 * 109.46689 * 239.99821 * 3 2 1 5 5 H 1.48497 * 109.46995 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47342 * 120.00100 * 3 2 1 7 7 C 1.38811 * 120.00300 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00493 * 180.02562 * 7 2 1 9 9 N 1.36938 * 119.99880 * 0.02562 * 7 2 1 10 10 C 1.46504 * 120.00171 * 173.93586 * 9 7 2 11 11 C 1.53003 * 112.84875 * 294.81689 * 10 9 7 12 12 N 1.46500 * 109.47398 * 294.03695 * 11 10 9 13 13 C 1.34768 * 120.00028 * 176.08866 * 12 11 10 14 14 O 1.21283 * 119.99763 * 0.02562 * 13 12 11 15 15 C 1.50694 * 120.00190 * 179.97438 * 13 12 11 16 16 C 1.50701 * 109.47517 * 180.02562 * 15 13 12 17 17 C 1.41380 * 126.58262 * 90.00081 * 16 15 13 18 18 C 1.34510 * 106.84437 * 179.97438 * 17 16 15 19 19 O 1.34309 * 108.41676 * 359.97438 * 18 17 16 20 20 C 1.34299 * 109.47883 * 0.02562 * 19 18 17 21 21 C 1.53779 * 113.61414 * 66.01541 * 10 9 7 22 22 C 1.53961 * 87.01895 * 89.22936 * 21 10 9 23 23 C 1.53778 * 113.61181 * 163.62424 * 10 9 7 24 24 H 0.97005 * 120.00476 * 0.02562 * 1 2 3 25 25 H 0.97005 * 119.99834 * 353.93291 * 9 7 2 26 26 H 1.08994 * 109.46798 * 174.03291 * 11 10 9 27 27 H 1.08997 * 109.46630 * 54.03307 * 11 10 9 28 28 H 0.97006 * 119.99641 * 356.08695 * 12 11 10 29 29 H 1.09005 * 109.47220 * 59.99927 * 15 13 12 30 30 H 1.09002 * 109.47695 * 300.00596 * 15 13 12 31 31 H 1.08000 * 126.57435 * 359.94601 * 17 16 15 32 32 H 1.07995 * 125.79166 * 179.74299 * 18 17 16 33 33 H 1.08002 * 125.78792 * 180.02562 * 20 19 18 34 34 H 1.08991 * 113.61454 * 203.74672 * 21 10 9 35 35 H 1.09002 * 113.61583 * 334.65421 * 21 10 9 36 36 H 1.09003 * 113.53907 * 270.81372 * 22 21 10 37 37 H 1.08995 * 113.66403 * 139.93221 * 22 21 10 38 38 H 1.08997 * 113.62119 * 25.35020 * 23 10 9 39 39 H 1.09003 * 113.61251 * 156.25063 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6963 -1.2125 5 1 1.2851 2.7465 -0.0006 6 1 3.1039 1.6965 1.2124 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 2.0520 -3.6533 -0.1329 11 6 2.7411 -3.8023 -1.4908 12 7 1.7280 -3.8920 -2.5454 13 6 2.1044 -3.9491 -3.8382 14 8 3.2817 -3.9268 -4.1285 15 6 1.0624 -4.0419 -4.9229 16 6 1.7404 -4.0926 -6.2678 17 6 2.1565 -5.2539 -6.9585 18 6 2.7107 -4.8431 -8.1132 19 8 2.6522 -3.5021 -8.1585 20 6 2.0649 -3.0415 -7.0420 21 6 2.9693 -3.9658 1.0610 22 6 1.7596 -4.6690 1.7033 23 6 1.2261 -4.8839 0.2771 24 1 -0.4851 0.8400 -0.0004 25 1 0.3595 -2.3904 0.0890 26 1 3.3484 -4.7073 -1.4926 27 1 3.3782 -2.9367 -1.6718 28 1 0.7864 -3.9102 -2.3130 29 1 0.4110 -3.1692 -4.8766 30 1 0.4695 -4.9456 -4.7810 31 1 2.0501 -6.2750 -6.6230 32 1 3.1346 -5.4828 -8.8730 33 1 1.8834 -2.0033 -6.8060 34 1 3.7885 -4.6421 0.8170 35 1 3.2983 -3.0790 1.6028 36 1 1.1397 -4.0052 2.3060 37 1 2.0146 -5.5952 2.2183 38 1 0.1498 -4.7374 0.1869 39 1 1.5678 -5.8117 -0.1817 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754981270.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:32:22 Heat of formation + Delta-G solvation = 8.435722 kcal Electronic energy + Delta-G solvation = -21500.037696 eV Core-core repulsion = 18217.359244 eV Total energy + Delta-G solvation = -3282.678452 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.46699 -39.45952 -38.36825 -33.97996 -33.71065 -33.26193 -30.47339 -29.98375 -28.31909 -26.41873 -25.29700 -23.80061 -21.87818 -21.53780 -20.73448 -19.73553 -18.24323 -17.45111 -17.10278 -16.73431 -15.71205 -15.54237 -15.19211 -14.81829 -14.55854 -14.31366 -13.97671 -13.34266 -13.16525 -13.07119 -12.75227 -12.55628 -12.32885 -12.06419 -11.78360 -11.35037 -11.22770 -11.02014 -10.84049 -10.38405 -10.25937 -10.10419 -9.80425 -9.73570 -9.48501 -9.32486 -8.88539 -8.45439 -8.43337 -7.05131 -5.83849 -3.13349 1.85088 2.62417 3.10303 3.21087 3.41522 3.46111 3.47691 3.82592 4.53108 4.80790 4.87350 5.07206 5.17912 5.20819 5.27111 5.36702 5.45009 5.46816 5.54007 5.59727 5.74356 5.78677 6.05969 6.07858 6.12523 6.18565 6.21807 6.31401 6.39060 6.52758 6.56800 6.71994 6.91126 6.98484 7.09309 7.17370 7.68593 8.05136 8.35063 8.72868 9.46398 9.99954 10.35378 11.38145 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.015384 B = 0.004867 C = 0.003985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1819.668123 B = 5752.164852 C = 7024.553417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.008 4.008 3 Si 0.904 3.096 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.235 4.235 8 H 0.070 0.930 9 N -0.699 5.699 10 C 0.174 3.826 11 C 0.121 3.879 12 N -0.706 5.706 13 C 0.509 3.491 14 O -0.547 6.547 15 C -0.073 4.073 16 C -0.158 4.158 17 C -0.198 4.198 18 C -0.051 4.051 19 O -0.179 6.179 20 C -0.028 4.028 21 C -0.151 4.151 22 C -0.128 4.128 23 C -0.144 4.144 24 H 0.256 0.744 25 H 0.386 0.614 26 H 0.051 0.949 27 H 0.068 0.932 28 H 0.399 0.601 29 H 0.102 0.898 30 H 0.098 0.902 31 H 0.144 0.856 32 H 0.199 0.801 33 H 0.201 0.799 34 H 0.068 0.932 35 H 0.074 0.926 36 H 0.081 0.919 37 H 0.054 0.946 38 H 0.065 0.935 39 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.283 -11.899 -8.995 14.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.204 4.204 3 Si 0.735 3.265 4 H -0.212 1.212 5 H -0.217 1.217 6 H -0.212 1.212 7 C -0.366 4.366 8 H 0.088 0.912 9 N -0.339 5.339 10 C 0.080 3.920 11 C -0.005 4.005 12 N -0.356 5.356 13 C 0.295 3.705 14 O -0.425 6.425 15 C -0.113 4.113 16 C -0.159 4.159 17 C -0.217 4.217 18 C -0.118 4.118 19 O -0.075 6.075 20 C -0.095 4.095 21 C -0.192 4.192 22 C -0.166 4.166 23 C -0.182 4.182 24 H 0.065 0.935 25 H 0.221 0.779 26 H 0.069 0.931 27 H 0.086 0.914 28 H 0.233 0.767 29 H 0.120 0.880 30 H 0.117 0.883 31 H 0.162 0.838 32 H 0.216 0.784 33 H 0.217 0.783 34 H 0.086 0.914 35 H 0.093 0.907 36 H 0.099 0.901 37 H 0.072 0.928 38 H 0.083 0.917 39 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 1.331 -11.529 -9.431 14.954 hybrid contribution -0.309 0.876 0.381 1.004 sum 1.022 -10.653 -9.050 14.015 Atomic orbital electron populations 1.69635 1.05055 1.25840 1.57438 1.24700 0.95448 0.97571 1.02651 0.86319 0.78622 0.83618 0.77962 1.21243 1.21715 1.21218 1.19059 0.91042 0.83665 1.42869 0.91237 1.42040 1.06020 0.99005 1.86862 1.20823 0.92969 0.87413 0.90755 1.21812 0.90719 1.00368 0.87574 1.45748 1.10821 1.73616 1.05409 1.20439 0.89912 0.76666 0.83517 1.90674 1.18811 1.50174 1.82813 1.20011 0.97067 1.04868 0.89371 1.19826 1.05840 0.93131 0.97142 1.21645 1.04786 0.99568 0.95711 1.23887 1.05694 0.81285 1.00930 1.84044 1.62433 1.22095 1.38887 1.23845 1.00299 0.99615 0.85771 1.23342 0.96355 1.00362 0.99098 1.22662 0.98531 0.99497 0.95896 1.23143 0.99889 0.97845 0.97358 0.93459 0.77938 0.93113 0.91374 0.76666 0.88001 0.88329 0.83799 0.78436 0.78253 0.91362 0.90733 0.90054 0.92760 0.91653 0.90477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -26.72 13.07 55.49 0.73 -25.99 16 2 C -0.01 -0.21 5.50 -17.44 -0.10 -0.30 16 3 Si 0.90 22.07 29.55 -169.99 -5.02 17.05 16 4 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 5 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 6 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 7 C -0.24 -6.16 9.06 -15.06 -0.14 -6.29 16 8 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 9 N -0.70 -15.86 5.18 -46.48 -0.24 -16.10 16 10 C 0.17 3.16 0.80 -131.01 -0.10 3.06 16 11 C 0.12 2.24 5.03 -4.04 -0.02 2.22 16 12 N -0.71 -11.84 5.45 -60.30 -0.33 -12.17 16 13 C 0.51 8.73 7.82 -10.99 -0.09 8.64 16 14 O -0.55 -11.53 16.03 5.55 0.09 -11.44 16 15 C -0.07 -0.95 6.22 -29.04 -0.18 -1.14 16 16 C -0.16 -2.19 4.66 -104.74 -0.49 -2.68 16 17 C -0.20 -2.49 10.87 -39.70 -0.43 -2.92 16 18 C -0.05 -0.58 12.09 29.41 0.36 -0.22 16 19 O -0.18 -2.39 10.65 5.71 0.06 -2.33 16 20 C -0.03 -0.37 12.01 29.42 0.35 -0.02 16 21 C -0.15 -2.58 7.29 -25.82 -0.19 -2.77 16 22 C -0.13 -1.97 8.00 -25.82 -0.21 -2.18 16 23 C -0.14 -2.16 7.08 -25.92 -0.18 -2.35 16 24 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 25 H 0.39 9.32 7.87 -40.82 -0.32 9.00 16 26 H 0.05 0.88 8.06 -51.93 -0.42 0.46 16 27 H 0.07 1.49 7.85 -51.93 -0.41 1.08 16 28 H 0.40 6.09 8.31 -40.82 -0.34 5.75 16 29 H 0.10 1.20 8.14 -51.93 -0.42 0.78 16 30 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 31 H 0.14 1.54 8.06 -52.49 -0.42 1.11 16 32 H 0.20 1.43 8.06 -52.49 -0.42 1.01 16 33 H 0.20 2.26 8.06 -52.49 -0.42 1.83 16 34 H 0.07 1.03 8.04 -51.93 -0.42 0.61 16 35 H 0.07 1.43 7.86 -51.93 -0.41 1.02 16 36 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 37 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.06 0.97 8.09 -51.93 -0.42 0.55 16 39 H 0.08 1.02 8.10 -51.93 -0.42 0.60 16 LS Contribution 334.74 15.07 5.04 5.04 Total: -1.00 -32.05 334.74 -6.74 -38.79 By element: Atomic # 1 Polarization: 19.73 SS G_CDS: -5.66 Total: 14.07 kcal Atomic # 6 Polarization: -5.53 SS G_CDS: -1.41 Total: -6.94 kcal Atomic # 7 Polarization: -54.41 SS G_CDS: 0.16 Total: -54.25 kcal Atomic # 8 Polarization: -13.92 SS G_CDS: 0.15 Total: -13.77 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -32.05 -6.74 -38.79 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754981270.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.229 kcal (2) G-P(sol) polarization free energy of solvation -32.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.793 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds