Wall clock time and date at job start Tue Mar 31 2020 00:32:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31608 * 1 3 3 Si 1.86806 * 120.00071 * 2 1 4 4 H 1.48503 * 109.46689 * 239.99821 * 3 2 1 5 5 H 1.48497 * 109.46995 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47342 * 120.00100 * 3 2 1 7 7 C 1.38811 * 120.00300 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00493 * 180.02562 * 7 2 1 9 9 N 1.36938 * 119.99880 * 0.02562 * 7 2 1 10 10 C 1.46504 * 120.00171 * 173.93586 * 9 7 2 11 11 C 1.53003 * 112.84875 * 294.81689 * 10 9 7 12 12 N 1.46500 * 109.47398 * 294.03695 * 11 10 9 13 13 C 1.34768 * 120.00028 * 176.08866 * 12 11 10 14 14 O 1.21283 * 119.99763 * 0.02562 * 13 12 11 15 15 C 1.50694 * 120.00190 * 179.97438 * 13 12 11 16 16 C 1.50701 * 109.47517 * 180.02562 * 15 13 12 17 17 C 1.41380 * 126.58262 * 90.00081 * 16 15 13 18 18 C 1.34510 * 106.84437 * 179.97438 * 17 16 15 19 19 O 1.34309 * 108.41676 * 359.97438 * 18 17 16 20 20 C 1.34299 * 109.47883 * 0.02562 * 19 18 17 21 21 C 1.53779 * 113.61414 * 66.01541 * 10 9 7 22 22 C 1.53961 * 87.01895 * 89.22936 * 21 10 9 23 23 C 1.53778 * 113.61181 * 163.62424 * 10 9 7 24 24 H 0.97005 * 120.00476 * 0.02562 * 1 2 3 25 25 H 0.97005 * 119.99834 * 353.93291 * 9 7 2 26 26 H 1.08994 * 109.46798 * 174.03291 * 11 10 9 27 27 H 1.08997 * 109.46630 * 54.03307 * 11 10 9 28 28 H 0.97006 * 119.99641 * 356.08695 * 12 11 10 29 29 H 1.09005 * 109.47220 * 59.99927 * 15 13 12 30 30 H 1.09002 * 109.47695 * 300.00596 * 15 13 12 31 31 H 1.08000 * 126.57435 * 359.94601 * 17 16 15 32 32 H 1.07995 * 125.79166 * 179.74299 * 18 17 16 33 33 H 1.08002 * 125.78792 * 180.02562 * 20 19 18 34 34 H 1.08991 * 113.61454 * 203.74672 * 21 10 9 35 35 H 1.09002 * 113.61583 * 334.65421 * 21 10 9 36 36 H 1.09003 * 113.53907 * 270.81372 * 22 21 10 37 37 H 1.08995 * 113.66403 * 139.93221 * 22 21 10 38 38 H 1.08997 * 113.62119 * 25.35020 * 23 10 9 39 39 H 1.09003 * 113.61251 * 156.25063 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6963 -1.2125 5 1 1.2851 2.7465 -0.0006 6 1 3.1039 1.6965 1.2124 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 2.0520 -3.6533 -0.1329 11 6 2.7411 -3.8023 -1.4908 12 7 1.7280 -3.8920 -2.5454 13 6 2.1044 -3.9491 -3.8382 14 8 3.2817 -3.9268 -4.1285 15 6 1.0624 -4.0419 -4.9229 16 6 1.7404 -4.0926 -6.2678 17 6 2.1565 -5.2539 -6.9585 18 6 2.7107 -4.8431 -8.1132 19 8 2.6522 -3.5021 -8.1585 20 6 2.0649 -3.0415 -7.0420 21 6 2.9693 -3.9658 1.0610 22 6 1.7596 -4.6690 1.7033 23 6 1.2261 -4.8839 0.2771 24 1 -0.4851 0.8400 -0.0004 25 1 0.3595 -2.3904 0.0890 26 1 3.3484 -4.7073 -1.4926 27 1 3.3782 -2.9367 -1.6718 28 1 0.7864 -3.9102 -2.3130 29 1 0.4110 -3.1692 -4.8766 30 1 0.4695 -4.9456 -4.7810 31 1 2.0501 -6.2750 -6.6230 32 1 3.1346 -5.4828 -8.8730 33 1 1.8834 -2.0033 -6.8060 34 1 3.7885 -4.6421 0.8170 35 1 3.2983 -3.0790 1.6028 36 1 1.1397 -4.0052 2.3060 37 1 2.0146 -5.5952 2.2183 38 1 0.1498 -4.7374 0.1869 39 1 1.5678 -5.8117 -0.1817 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754981270.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:32:22 Heat of formation + Delta-G solvation = -13.437940 kcal Electronic energy + Delta-G solvation = -21500.986209 eV Core-core repulsion = 18217.359244 eV Total energy + Delta-G solvation = -3283.626965 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -43.42046 -40.87369 -39.77604 -35.29178 -35.17302 -34.88466 -31.95480 -31.36045 -29.53805 -27.73086 -26.71259 -25.64841 -23.24234 -22.45786 -21.94527 -20.92417 -19.70896 -19.10952 -18.46771 -17.98944 -17.01325 -16.72840 -16.56621 -16.30742 -15.89048 -15.61438 -15.43884 -15.07905 -14.61076 -14.35791 -14.03975 -13.65029 -13.51825 -13.34193 -13.07277 -12.96310 -12.89332 -12.54843 -12.40002 -12.20613 -11.93264 -11.58586 -11.47510 -11.09197 -10.89186 -10.78006 -10.46187 -9.90514 -9.41218 -8.97021 -7.93722 -5.19949 0.89345 1.44977 1.46245 1.51475 1.63011 1.76606 2.31763 2.51956 2.57491 3.38423 3.75995 3.82598 3.83191 3.96764 3.98841 4.06980 4.12455 4.19658 4.28915 4.57457 4.64049 4.68032 4.81244 4.85056 4.91313 4.93141 5.02575 5.13872 5.14428 5.30759 5.32422 5.43498 5.54694 5.61577 5.66217 5.72631 6.22211 6.30784 6.71831 7.37142 7.38968 8.11250 8.35494 9.28406 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.015384 B = 0.004867 C = 0.003985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1819.668123 B = 5752.164852 C = 7024.553417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.960 5.960 2 C -0.062 4.062 3 Si 0.954 3.046 4 H -0.289 1.289 5 H -0.294 1.294 6 H -0.281 1.281 7 C -0.224 4.224 8 H 0.062 0.938 9 N -0.703 5.703 10 C 0.158 3.842 11 C 0.131 3.869 12 N -0.702 5.702 13 C 0.506 3.494 14 O -0.591 6.591 15 C -0.064 4.064 16 C -0.177 4.177 17 C -0.218 4.218 18 C -0.045 4.045 19 O -0.191 6.191 20 C -0.049 4.049 21 C -0.152 4.152 22 C -0.121 4.121 23 C -0.125 4.125 24 H 0.250 0.750 25 H 0.378 0.622 26 H 0.066 0.934 27 H 0.026 0.974 28 H 0.408 0.592 29 H 0.114 0.886 30 H 0.130 0.870 31 H 0.161 0.839 32 H 0.238 0.762 33 H 0.211 0.789 34 H 0.092 0.908 35 H 0.045 0.955 36 H 0.061 0.939 37 H 0.085 0.915 38 H 0.069 0.931 39 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.201 -13.960 -9.419 16.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.611 5.611 2 C -0.255 4.255 3 Si 0.785 3.215 4 H -0.216 1.216 5 H -0.220 1.220 6 H -0.208 1.208 7 C -0.356 4.356 8 H 0.080 0.920 9 N -0.343 5.343 10 C 0.066 3.934 11 C 0.004 3.996 12 N -0.352 5.352 13 C 0.293 3.707 14 O -0.472 6.472 15 C -0.104 4.104 16 C -0.179 4.179 17 C -0.237 4.237 18 C -0.112 4.112 19 O -0.087 6.087 20 C -0.116 4.116 21 C -0.192 4.192 22 C -0.158 4.158 23 C -0.163 4.163 24 H 0.059 0.941 25 H 0.211 0.789 26 H 0.084 0.916 27 H 0.044 0.956 28 H 0.244 0.756 29 H 0.132 0.868 30 H 0.148 0.852 31 H 0.178 0.822 32 H 0.254 0.746 33 H 0.227 0.773 34 H 0.111 0.889 35 H 0.064 0.936 36 H 0.079 0.921 37 H 0.104 0.896 38 H 0.088 0.912 39 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 1.253 -13.622 -9.842 16.852 hybrid contribution -0.197 1.426 0.496 1.522 sum 1.056 -12.196 -9.346 15.402 Atomic orbital electron populations 1.69743 1.05946 1.25784 1.59578 1.25264 0.96153 1.00018 1.04085 0.85505 0.77469 0.80825 0.77718 1.21614 1.22011 1.20753 1.19239 0.90874 0.85083 1.40414 0.91957 1.42064 1.05682 0.99761 1.86776 1.21125 0.94238 0.87078 0.90928 1.21615 0.90778 0.99178 0.88033 1.45739 1.10964 1.73201 1.05247 1.21160 0.90137 0.75278 0.84086 1.90650 1.20925 1.52161 1.83422 1.20025 0.95976 1.06920 0.87455 1.20111 1.06321 0.93904 0.97521 1.21970 1.05433 1.00100 0.96209 1.24698 1.04308 0.80753 1.01447 1.84044 1.62512 1.23241 1.38926 1.24183 1.00852 1.00400 0.86170 1.23372 0.97612 1.00032 0.98168 1.22588 0.96943 1.00132 0.96133 1.23094 0.99691 0.96882 0.96621 0.94137 0.78856 0.91578 0.95591 0.75607 0.86808 0.85230 0.82160 0.74621 0.77283 0.88942 0.93613 0.92065 0.89630 0.91232 0.87645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -55.78 13.07 21.65 0.28 -55.50 16 2 C -0.06 -3.45 5.50 84.86 0.47 -2.99 16 3 Si 0.95 46.07 29.55 68.60 2.03 48.09 16 4 H -0.29 -13.96 7.11 99.48 0.71 -13.26 16 5 H -0.29 -14.22 7.11 99.48 0.71 -13.51 16 6 H -0.28 -13.21 7.11 99.48 0.71 -12.50 16 7 C -0.22 -11.87 9.06 84.03 0.76 -11.11 16 8 H 0.06 3.34 7.83 -2.91 -0.02 3.32 16 9 N -0.70 -31.95 5.18 -300.96 -1.56 -33.51 16 10 C 0.16 5.58 0.80 4.13 0.00 5.58 16 11 C 0.13 4.72 5.03 86.38 0.43 5.16 16 12 N -0.70 -22.74 5.45 -463.08 -2.52 -25.26 16 13 C 0.51 16.90 7.82 87.66 0.69 17.58 16 14 O -0.59 -24.90 16.03 -3.04 -0.05 -24.94 16 15 C -0.06 -1.57 6.22 29.10 0.18 -1.39 16 16 C -0.18 -4.71 4.66 -19.94 -0.09 -4.80 16 17 C -0.22 -5.10 10.87 22.19 0.24 -4.85 16 18 C -0.05 -0.95 12.09 66.97 0.81 -0.14 16 19 O -0.19 -4.94 10.65 -2.50 -0.03 -4.96 16 20 C -0.05 -1.29 12.01 66.97 0.80 -0.49 16 21 C -0.15 -4.95 7.29 31.18 0.23 -4.72 16 22 C -0.12 -3.39 8.00 31.18 0.25 -3.14 16 23 C -0.13 -3.37 7.08 31.12 0.22 -3.15 16 24 H 0.25 14.31 8.31 -92.70 -0.77 13.54 16 25 H 0.38 18.29 7.87 -92.70 -0.73 17.57 16 26 H 0.07 2.19 8.06 -2.39 -0.02 2.17 16 27 H 0.03 1.15 7.85 -2.39 -0.02 1.13 16 28 H 0.41 11.79 8.31 -92.70 -0.77 11.02 16 29 H 0.11 2.51 8.14 -2.38 -0.02 2.49 16 30 H 0.13 2.34 8.14 -2.39 -0.02 2.32 16 31 H 0.16 3.05 8.06 -2.91 -0.02 3.03 16 32 H 0.24 2.68 8.06 -2.91 -0.02 2.66 16 33 H 0.21 4.76 8.06 -2.91 -0.02 4.74 16 34 H 0.09 2.56 8.04 -2.39 -0.02 2.54 16 35 H 0.04 1.74 7.86 -2.39 -0.02 1.72 16 36 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 37 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 38 H 0.07 1.86 8.09 -2.39 -0.02 1.84 16 39 H 0.11 2.31 8.10 -2.39 -0.02 2.30 16 Total: -1.00 -70.31 334.74 2.71 -67.60 By element: Atomic # 1 Polarization: 37.39 SS G_CDS: -0.43 Total: 36.95 kcal Atomic # 6 Polarization: -13.46 SS G_CDS: 4.99 Total: -8.47 kcal Atomic # 7 Polarization: -110.47 SS G_CDS: -3.80 Total: -114.27 kcal Atomic # 8 Polarization: -29.83 SS G_CDS: -0.08 Total: -29.91 kcal Atomic # 14 Polarization: 46.07 SS G_CDS: 2.03 Total: 48.09 kcal Total: -70.31 2.71 -67.60 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754981270.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.163 kcal (2) G-P(sol) polarization free energy of solvation -70.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.601 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds