Wall clock time and date at job start Tue Mar 31 2020 00:32:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86800 * 120.00195 * 2 1 4 4 H 1.48503 * 109.47349 * 270.00208 * 3 2 1 5 5 H 1.48501 * 109.47215 * 30.00033 * 3 2 1 6 6 H 1.48499 * 109.47167 * 150.00035 * 3 2 1 7 7 C 1.38811 * 119.99707 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99738 * 179.97438 * 7 2 1 9 9 N 1.36931 * 120.00118 * 0.02562 * 7 2 1 10 10 C 1.46501 * 120.00187 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.47522 * 180.02562 * 10 9 7 12 12 C 1.53780 * 113.61886 * 175.00125 * 11 10 9 13 13 C 1.53778 * 87.08223 * 139.97443 * 12 11 10 14 14 N 1.46503 * 113.61195 * 89.11708 * 13 12 11 15 15 C 1.34777 * 119.99907 * 156.52414 * 14 13 12 16 16 O 1.21284 * 119.99941 * 0.02562 * 15 14 13 17 17 C 1.50700 * 119.99946 * 179.97438 * 15 14 13 18 18 C 1.50701 * 109.46955 * 180.02562 * 17 15 14 19 19 C 1.41381 * 126.57424 * 90.00355 * 18 17 15 20 20 C 1.34520 * 106.83580 * 179.72986 * 19 18 17 21 21 O 1.34302 * 108.42210 * 0.26485 * 20 19 18 22 22 C 1.34302 * 109.47622 * 359.97438 * 21 20 19 23 23 C 1.53779 * 87.17617 * 334.52485 * 13 12 11 24 24 H 0.97006 * 119.99554 * 359.97438 * 1 2 3 25 25 H 0.96996 * 120.00239 * 0.02562 * 9 7 2 26 26 H 1.08999 * 109.47070 * 59.99215 * 10 9 7 27 27 H 1.09010 * 109.47029 * 300.00033 * 10 9 7 28 28 H 1.09001 * 112.84787 * 43.79585 * 11 10 9 29 29 H 1.09004 * 113.61315 * 25.42662 * 12 11 10 30 30 H 1.08994 * 113.61040 * 254.53120 * 12 11 10 31 31 H 1.08999 * 113.61456 * 219.92943 * 13 12 11 32 32 H 0.96996 * 119.99724 * 336.53087 * 14 13 12 33 33 H 1.09007 * 109.46960 * 60.00376 * 17 15 14 34 34 H 1.08999 * 109.46970 * 300.00269 * 17 15 14 35 35 H 1.08002 * 126.58570 * 359.97438 * 19 18 17 36 36 H 1.08005 * 125.78720 * 180.29666 * 20 19 18 37 37 H 1.07999 * 125.79201 * 179.97438 * 22 21 20 38 38 H 1.08995 * 113.61204 * 140.02064 * 23 13 12 39 39 H 1.09000 * 113.61533 * 270.92811 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0465 -1.4001 5 1 1.4478 2.6527 0.7000 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3880 -0.0016 10 6 2.0580 -3.6568 -0.0016 11 6 1.0637 -4.8197 -0.0035 12 6 1.7304 -6.2000 -0.1265 13 6 0.7037 -6.7004 0.9033 14 7 -0.5391 -7.1908 0.3022 15 6 -1.3123 -8.0671 0.9735 16 8 -0.9795 -8.4494 2.0754 17 6 -2.5910 -8.5711 0.3554 18 6 -3.2628 -9.5310 1.3033 19 6 -4.2063 -9.2048 2.3044 20 6 -4.5479 -10.3574 2.9082 21 8 -3.8609 -11.3577 2.3330 22 6 -3.0775 -10.8621 1.3611 23 6 0.6144 -5.2498 1.4059 24 1 -0.4850 0.8401 0.0004 25 1 0.3556 -2.3880 -0.0023 26 1 2.6840 -3.7149 0.8888 27 1 2.6853 -3.7142 -0.8912 28 1 0.2384 -4.6698 -0.6996 29 1 2.7583 -6.2223 0.2356 30 1 1.6176 -6.6531 -1.1113 31 1 1.1210 -7.3914 1.6357 32 1 -0.8054 -6.8848 -0.5789 33 1 -2.3654 -9.0823 -0.5806 34 1 -3.2558 -7.7300 0.1590 35 1 -4.5836 -8.2200 2.5370 36 1 -5.2552 -10.4607 3.7179 37 1 -2.4142 -11.4354 0.7305 38 1 -0.3989 -4.9365 1.6573 39 1 1.3377 -5.0127 2.1861 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755210618.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:32:16 Heat of formation + Delta-G solvation = 7.454147 kcal Electronic energy + Delta-G solvation = -20546.390887 eV Core-core repulsion = 17263.669870 eV Total energy + Delta-G solvation = -3282.721017 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.71232 -40.14126 -38.30917 -34.54028 -34.13260 -33.10364 -30.95623 -30.44350 -28.16941 -26.58973 -25.49184 -23.43350 -21.82793 -21.73294 -21.27944 -20.18571 -19.06328 -17.66154 -17.26491 -16.96788 -15.99424 -15.84330 -15.35771 -14.99541 -14.72225 -14.40267 -14.04421 -13.58795 -13.45909 -13.19014 -12.95098 -12.74181 -12.69535 -12.30799 -12.10126 -11.80308 -11.56226 -11.02674 -10.82476 -10.47740 -10.34236 -10.12912 -10.07601 -9.83291 -9.69840 -9.58625 -8.98126 -8.83126 -8.70406 -6.89323 -5.75215 -3.03273 1.60424 2.35625 2.58974 2.96707 3.24445 3.44149 3.49203 3.51057 4.51107 4.57130 4.59038 4.67124 4.77074 4.84829 4.89560 5.12294 5.14915 5.18346 5.27456 5.50621 5.59116 5.75035 5.81380 5.87635 5.94842 5.97305 6.02888 6.12110 6.25683 6.30157 6.33514 6.43991 6.65778 6.79485 6.93037 6.95174 7.47809 7.71116 8.20512 8.44164 9.55074 10.14380 10.48830 11.47835 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.034490 B = 0.002698 C = 0.002571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 811.638512 B =10377.485532 C =10886.742243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.016 4.016 3 Si 0.907 3.093 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.238 4.238 8 H 0.070 0.930 9 N -0.732 5.732 10 C 0.162 3.838 11 C -0.113 4.113 12 C -0.138 4.138 13 C 0.116 3.884 14 N -0.711 5.711 15 C 0.514 3.486 16 O -0.533 6.533 17 C -0.072 4.072 18 C -0.162 4.162 19 C -0.198 4.198 20 C -0.045 4.045 21 O -0.178 6.178 22 C -0.029 4.029 23 C -0.139 4.139 24 H 0.254 0.746 25 H 0.383 0.617 26 H 0.020 0.980 27 H 0.018 0.982 28 H 0.088 0.912 29 H 0.094 0.906 30 H 0.069 0.931 31 H 0.097 0.903 32 H 0.401 0.599 33 H 0.101 0.899 34 H 0.105 0.895 35 H 0.147 0.853 36 H 0.201 0.799 37 H 0.199 0.801 38 H 0.067 0.933 39 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.948 -22.301 -0.140 23.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.212 4.212 3 Si 0.738 3.262 4 H -0.218 1.218 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.369 4.369 8 H 0.088 0.912 9 N -0.376 5.376 10 C 0.034 3.966 11 C -0.132 4.132 12 C -0.176 4.176 13 C 0.011 3.989 14 N -0.362 5.362 15 C 0.300 3.700 16 O -0.409 6.409 17 C -0.112 4.112 18 C -0.164 4.164 19 C -0.217 4.217 20 C -0.113 4.113 21 O -0.074 6.074 22 C -0.097 4.097 23 C -0.177 4.177 24 H 0.064 0.936 25 H 0.217 0.783 26 H 0.038 0.962 27 H 0.036 0.964 28 H 0.106 0.894 29 H 0.112 0.888 30 H 0.087 0.913 31 H 0.115 0.885 32 H 0.236 0.764 33 H 0.120 0.880 34 H 0.123 0.877 35 H 0.165 0.835 36 H 0.218 0.782 37 H 0.216 0.784 38 H 0.086 0.914 39 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -6.585 -22.762 0.757 23.707 hybrid contribution 0.026 1.541 -0.478 1.613 sum -6.559 -21.222 0.280 22.214 Atomic orbital electron populations 1.69665 1.05108 1.25576 1.57991 1.24742 0.95537 0.97692 1.03182 0.86187 0.78655 0.83862 0.77489 1.21753 1.21783 1.20783 1.19247 0.91031 0.84281 1.42384 0.91244 1.42349 1.05840 1.00010 1.89395 1.20641 0.93030 0.85235 0.97650 1.22805 0.99069 0.94195 0.97096 1.23300 0.98873 0.96611 0.98837 1.21920 0.84547 0.95923 0.96528 1.45710 1.23449 1.45778 1.21313 1.20579 0.85036 0.78551 0.85814 1.90716 1.72584 1.57773 1.19847 1.20010 0.94330 0.99088 0.97770 1.19794 1.01718 0.93869 1.01006 1.21708 1.01484 0.99631 0.98874 1.23956 1.00512 0.85512 1.01284 1.84051 1.45611 1.37015 1.40690 1.23757 0.98067 0.94022 0.93829 1.23452 1.02402 0.94261 0.97622 0.93569 0.78346 0.96226 0.96429 0.89423 0.88776 0.91278 0.88523 0.76425 0.88045 0.87709 0.83528 0.78206 0.78403 0.91374 0.89218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.49 13.06 55.49 0.72 -27.77 16 2 C -0.02 -0.46 5.50 -17.43 -0.10 -0.56 16 3 Si 0.91 22.59 29.55 -169.99 -5.02 17.57 16 4 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 5 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 6 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 7 C -0.24 -6.75 9.99 -15.06 -0.15 -6.90 16 8 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 9 N -0.73 -18.68 5.60 -59.91 -0.34 -19.01 16 10 C 0.16 3.23 6.10 -4.04 -0.02 3.20 16 11 C -0.11 -1.74 3.65 -89.66 -0.33 -2.06 16 12 C -0.14 -1.64 7.38 -25.92 -0.19 -1.83 16 13 C 0.12 1.47 4.29 -67.12 -0.29 1.18 16 14 N -0.71 -7.79 5.26 -53.02 -0.28 -8.07 16 15 C 0.51 6.25 7.82 -10.98 -0.09 6.16 16 16 O -0.53 -8.81 15.65 5.55 0.09 -8.72 16 17 C -0.07 -0.62 6.22 -29.03 -0.18 -0.80 16 18 C -0.16 -1.70 4.66 -104.74 -0.49 -2.19 16 19 C -0.20 -2.06 10.87 -39.70 -0.43 -2.49 16 20 C -0.05 -0.42 12.09 29.42 0.36 -0.06 16 21 O -0.18 -1.87 10.65 5.71 0.06 -1.81 16 22 C -0.03 -0.28 12.01 29.42 0.35 0.07 16 23 C -0.14 -2.09 7.45 -25.77 -0.19 -2.28 16 24 H 0.25 7.49 8.31 -40.82 -0.34 7.15 16 25 H 0.38 10.26 7.67 -40.82 -0.31 9.94 16 26 H 0.02 0.40 7.85 -51.93 -0.41 -0.01 16 27 H 0.02 0.36 8.14 -51.92 -0.42 -0.07 16 28 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 29 H 0.09 1.08 8.10 -51.93 -0.42 0.66 16 30 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.10 1.32 7.50 -51.93 -0.39 0.93 16 32 H 0.40 3.43 8.70 -40.82 -0.36 3.08 16 33 H 0.10 0.59 8.14 -51.92 -0.42 0.17 16 34 H 0.10 0.77 8.14 -51.93 -0.42 0.34 16 35 H 0.15 1.36 8.06 -52.49 -0.42 0.94 16 36 H 0.20 1.10 8.06 -52.48 -0.42 0.68 16 37 H 0.20 1.29 8.06 -52.49 -0.42 0.87 16 38 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 39 H 0.09 1.39 7.90 -51.93 -0.41 0.98 16 LS Contribution 336.02 15.07 5.06 5.06 Total: -1.00 -35.24 336.02 -7.10 -42.34 By element: Atomic # 1 Polarization: 14.63 SS G_CDS: -5.65 Total: 8.98 kcal Atomic # 6 Polarization: -6.82 SS G_CDS: -1.75 Total: -8.56 kcal Atomic # 7 Polarization: -54.96 SS G_CDS: 0.11 Total: -54.85 kcal Atomic # 8 Polarization: -10.68 SS G_CDS: 0.15 Total: -10.53 kcal Atomic # 14 Polarization: 22.59 SS G_CDS: -5.02 Total: 17.57 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -35.24 -7.10 -42.34 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755210618.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.791 kcal (2) G-P(sol) polarization free energy of solvation -35.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.337 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds