Wall clock time and date at job start Tue Mar 31 2020 00:32:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86800 * 120.00195 * 2 1 4 4 H 1.48503 * 109.47349 * 270.00208 * 3 2 1 5 5 H 1.48501 * 109.47215 * 30.00033 * 3 2 1 6 6 H 1.48499 * 109.47167 * 150.00035 * 3 2 1 7 7 C 1.38811 * 119.99707 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99738 * 179.97438 * 7 2 1 9 9 N 1.36931 * 120.00118 * 0.02562 * 7 2 1 10 10 C 1.46501 * 120.00187 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.47522 * 180.02562 * 10 9 7 12 12 C 1.53780 * 113.61886 * 175.00125 * 11 10 9 13 13 C 1.53778 * 87.08223 * 139.97443 * 12 11 10 14 14 N 1.46503 * 113.61195 * 89.11708 * 13 12 11 15 15 C 1.34777 * 119.99907 * 156.52414 * 14 13 12 16 16 O 1.21284 * 119.99941 * 0.02562 * 15 14 13 17 17 C 1.50700 * 119.99946 * 179.97438 * 15 14 13 18 18 C 1.50701 * 109.46955 * 180.02562 * 17 15 14 19 19 C 1.41381 * 126.57424 * 90.00355 * 18 17 15 20 20 C 1.34520 * 106.83580 * 179.72986 * 19 18 17 21 21 O 1.34302 * 108.42210 * 0.26485 * 20 19 18 22 22 C 1.34302 * 109.47622 * 359.97438 * 21 20 19 23 23 C 1.53779 * 87.17617 * 334.52485 * 13 12 11 24 24 H 0.97006 * 119.99554 * 359.97438 * 1 2 3 25 25 H 0.96996 * 120.00239 * 0.02562 * 9 7 2 26 26 H 1.08999 * 109.47070 * 59.99215 * 10 9 7 27 27 H 1.09010 * 109.47029 * 300.00033 * 10 9 7 28 28 H 1.09001 * 112.84787 * 43.79585 * 11 10 9 29 29 H 1.09004 * 113.61315 * 25.42662 * 12 11 10 30 30 H 1.08994 * 113.61040 * 254.53120 * 12 11 10 31 31 H 1.08999 * 113.61456 * 219.92943 * 13 12 11 32 32 H 0.96996 * 119.99724 * 336.53087 * 14 13 12 33 33 H 1.09007 * 109.46960 * 60.00376 * 17 15 14 34 34 H 1.08999 * 109.46970 * 300.00269 * 17 15 14 35 35 H 1.08002 * 126.58570 * 359.97438 * 19 18 17 36 36 H 1.08005 * 125.78720 * 180.29666 * 20 19 18 37 37 H 1.07999 * 125.79201 * 179.97438 * 22 21 20 38 38 H 1.08995 * 113.61204 * 140.02064 * 23 13 12 39 39 H 1.09000 * 113.61533 * 270.92811 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0465 -1.4001 5 1 1.4478 2.6527 0.7000 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3880 -0.0016 10 6 2.0580 -3.6568 -0.0016 11 6 1.0637 -4.8197 -0.0035 12 6 1.7304 -6.2000 -0.1265 13 6 0.7037 -6.7004 0.9033 14 7 -0.5391 -7.1908 0.3022 15 6 -1.3123 -8.0671 0.9735 16 8 -0.9795 -8.4494 2.0754 17 6 -2.5910 -8.5711 0.3554 18 6 -3.2628 -9.5310 1.3033 19 6 -4.2063 -9.2048 2.3044 20 6 -4.5479 -10.3574 2.9082 21 8 -3.8609 -11.3577 2.3330 22 6 -3.0775 -10.8621 1.3611 23 6 0.6144 -5.2498 1.4059 24 1 -0.4850 0.8401 0.0004 25 1 0.3556 -2.3880 -0.0023 26 1 2.6840 -3.7149 0.8888 27 1 2.6853 -3.7142 -0.8912 28 1 0.2384 -4.6698 -0.6996 29 1 2.7583 -6.2223 0.2356 30 1 1.6176 -6.6531 -1.1113 31 1 1.1210 -7.3914 1.6357 32 1 -0.8054 -6.8848 -0.5789 33 1 -2.3654 -9.0823 -0.5806 34 1 -3.2558 -7.7300 0.1590 35 1 -4.5836 -8.2200 2.5370 36 1 -5.2552 -10.4607 3.7179 37 1 -2.4142 -11.4354 0.7305 38 1 -0.3989 -4.9365 1.6573 39 1 1.3377 -5.0127 2.1861 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755210618.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:32:15 Heat of formation + Delta-G solvation = -17.165642 kcal Electronic energy + Delta-G solvation = -20547.458481 eV Core-core repulsion = 17263.669870 eV Total energy + Delta-G solvation = -3283.788611 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -43.42454 -41.18996 -39.43584 -36.34050 -34.90958 -34.36828 -32.79746 -31.25359 -29.11523 -28.08527 -26.62228 -25.22419 -23.13111 -22.50110 -22.36390 -20.96326 -20.28093 -19.06379 -18.42518 -18.07420 -16.97385 -16.70041 -16.66390 -16.28144 -15.79478 -15.69043 -15.41776 -15.11236 -14.65537 -14.54228 -13.98219 -13.77617 -13.66338 -13.36854 -13.26731 -13.11211 -12.89125 -12.69600 -12.40524 -12.18119 -11.92841 -11.73678 -11.34556 -11.14447 -11.07938 -10.85490 -10.51580 -9.99677 -9.40966 -8.98002 -7.95376 -5.23572 0.89829 1.46793 1.48591 1.57044 1.59396 1.66371 2.29902 2.40250 2.55972 3.37615 3.60685 3.61214 3.79398 3.93479 3.94928 3.99006 4.07171 4.18829 4.33884 4.57031 4.58345 4.65429 4.77062 4.81479 4.85388 4.93212 4.93805 4.99598 5.12395 5.16093 5.28493 5.32345 5.38992 5.49523 5.59972 5.71067 6.21609 6.27672 6.61156 7.30898 7.33508 8.11576 8.33971 9.28293 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.034490 B = 0.002698 C = 0.002571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 811.638512 B =10377.485532 C =10886.742243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.970 5.970 2 C -0.078 4.078 3 Si 0.974 3.026 4 H -0.285 1.285 5 H -0.296 1.296 6 H -0.270 1.270 7 C -0.246 4.246 8 H 0.075 0.925 9 N -0.745 5.745 10 C 0.159 3.841 11 C -0.110 4.110 12 C -0.115 4.115 13 C 0.127 3.873 14 N -0.702 5.702 15 C 0.513 3.487 16 O -0.582 6.582 17 C -0.064 4.064 18 C -0.184 4.184 19 C -0.227 4.227 20 C -0.047 4.047 21 O -0.191 6.191 22 C -0.037 4.037 23 C -0.145 4.145 24 H 0.251 0.749 25 H 0.373 0.627 26 H 0.018 0.982 27 H 0.023 0.977 28 H 0.088 0.912 29 H 0.103 0.897 30 H 0.095 0.905 31 H 0.089 0.911 32 H 0.416 0.584 33 H 0.136 0.864 34 H 0.119 0.881 35 H 0.150 0.850 36 H 0.231 0.769 37 H 0.226 0.774 38 H 0.049 0.951 39 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.357 -23.318 -1.226 24.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.621 5.621 2 C -0.270 4.270 3 Si 0.803 3.197 4 H -0.212 1.212 5 H -0.222 1.222 6 H -0.195 1.195 7 C -0.378 4.378 8 H 0.092 0.908 9 N -0.388 5.388 10 C 0.033 3.967 11 C -0.129 4.129 12 C -0.153 4.153 13 C 0.021 3.979 14 N -0.354 5.354 15 C 0.301 3.699 16 O -0.461 6.461 17 C -0.104 4.104 18 C -0.186 4.186 19 C -0.246 4.246 20 C -0.113 4.113 21 O -0.087 6.087 22 C -0.104 4.104 23 C -0.184 4.184 24 H 0.060 0.940 25 H 0.205 0.795 26 H 0.036 0.964 27 H 0.041 0.959 28 H 0.106 0.894 29 H 0.122 0.878 30 H 0.114 0.886 31 H 0.107 0.893 32 H 0.253 0.747 33 H 0.154 0.846 34 H 0.137 0.863 35 H 0.167 0.833 36 H 0.248 0.752 37 H 0.242 0.758 38 H 0.068 0.932 39 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -5.967 -23.801 -0.365 24.540 hybrid contribution -0.148 1.823 -0.103 1.831 sum -6.114 -21.978 -0.468 22.818 Atomic orbital electron populations 1.69820 1.06601 1.26037 1.59647 1.25582 0.96442 1.01149 1.03824 0.85136 0.77660 0.79433 0.77518 1.21196 1.22224 1.19532 1.19663 0.91510 0.85557 1.41034 0.90751 1.42585 1.05612 1.01290 1.89302 1.20837 0.93835 0.84617 0.97434 1.22733 0.98554 0.94295 0.97291 1.23203 0.98790 0.93362 0.99959 1.21709 0.85523 0.94035 0.96667 1.45647 1.22742 1.45205 1.21758 1.21209 0.85711 0.77852 0.85138 1.90697 1.73859 1.59537 1.22043 1.20066 0.92379 0.99539 0.98383 1.20136 1.02157 0.94662 1.01647 1.22000 1.02451 1.00322 0.99808 1.24583 1.00324 0.84991 1.01444 1.84053 1.45952 1.37620 1.41068 1.24342 0.97999 0.94309 0.93754 1.23466 1.01052 0.96472 0.97399 0.94028 0.79533 0.96424 0.95936 0.89362 0.87829 0.88649 0.89300 0.74721 0.84583 0.86280 0.83262 0.75242 0.75804 0.93224 0.90102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.87 13.06 21.65 0.28 -59.58 16 2 C -0.08 -4.52 5.50 84.86 0.47 -4.06 16 3 Si 0.97 46.46 29.55 68.60 2.03 48.48 16 4 H -0.28 -13.26 7.11 99.48 0.71 -12.56 16 5 H -0.30 -14.19 7.11 99.48 0.71 -13.48 16 6 H -0.27 -12.23 7.11 99.48 0.71 -11.53 16 7 C -0.25 -13.90 9.99 84.03 0.84 -13.06 16 8 H 0.07 4.04 7.83 -2.91 -0.02 4.02 16 9 N -0.75 -38.16 5.60 -343.45 -1.92 -40.09 16 10 C 0.16 6.21 6.10 86.38 0.53 6.74 16 11 C -0.11 -3.25 3.65 -10.17 -0.04 -3.28 16 12 C -0.11 -2.43 7.38 31.12 0.23 -2.20 16 13 C 0.13 3.03 4.29 45.52 0.20 3.22 16 14 N -0.70 -14.05 5.26 -440.03 -2.32 -16.37 16 15 C 0.51 11.79 7.82 87.66 0.69 12.47 16 16 O -0.58 -19.10 15.65 -3.04 -0.05 -19.14 16 17 C -0.06 -0.98 6.22 29.10 0.18 -0.80 16 18 C -0.18 -3.66 4.66 -19.94 -0.09 -3.75 16 19 C -0.23 -4.64 10.87 22.19 0.24 -4.40 16 20 C -0.05 -0.83 12.09 66.97 0.81 -0.02 16 21 O -0.19 -3.85 10.65 -2.47 -0.03 -3.88 16 22 C -0.04 -0.67 12.01 66.97 0.80 0.14 16 23 C -0.15 -4.35 7.45 31.22 0.23 -4.11 16 24 H 0.25 14.98 8.31 -92.70 -0.77 14.21 16 25 H 0.37 20.29 7.67 -92.71 -0.71 19.57 16 26 H 0.02 0.71 7.85 -2.39 -0.02 0.69 16 27 H 0.02 0.87 8.14 -2.38 -0.02 0.85 16 28 H 0.09 2.62 8.14 -2.39 -0.02 2.60 16 29 H 0.10 2.06 8.10 -2.39 -0.02 2.04 16 30 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 31 H 0.09 2.35 7.50 -2.39 -0.02 2.33 16 32 H 0.42 5.98 8.70 -92.71 -0.81 5.18 16 33 H 0.14 1.11 8.14 -2.38 -0.02 1.09 16 34 H 0.12 1.49 8.14 -2.39 -0.02 1.47 16 35 H 0.15 2.79 8.06 -2.91 -0.02 2.77 16 36 H 0.23 2.22 8.06 -2.91 -0.02 2.20 16 37 H 0.23 2.46 8.06 -2.91 -0.02 2.44 16 38 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 39 H 0.08 2.54 7.90 -2.39 -0.02 2.52 16 Total: -1.00 -76.70 336.02 2.63 -74.07 By element: Atomic # 1 Polarization: 30.07 SS G_CDS: -0.45 Total: 29.62 kcal Atomic # 6 Polarization: -18.20 SS G_CDS: 5.08 Total: -13.11 kcal Atomic # 7 Polarization: -112.08 SS G_CDS: -3.96 Total: -116.04 kcal Atomic # 8 Polarization: -22.95 SS G_CDS: -0.07 Total: -23.02 kcal Atomic # 14 Polarization: 46.46 SS G_CDS: 2.03 Total: 48.48 kcal Total: -76.70 2.63 -74.07 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755210618.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.908 kcal (2) G-P(sol) polarization free energy of solvation -76.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.073 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds