Wall clock time and date at job start Mon Mar 30 2020 23:53:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35984 * 117.00037 * 2 1 4 4 C 1.38539 * 120.08143 * 359.97438 * 3 2 1 5 5 C 1.38247 * 120.01369 * 180.23304 * 4 3 2 6 6 C 1.38274 * 120.17773 * 359.48697 * 5 4 3 7 7 C 1.50697 * 119.92518 * 180.27858 * 6 5 4 8 8 C 1.38211 * 120.15801 * 0.51113 * 6 5 4 9 9 C 1.38714 * 119.98337 * 359.74498 * 8 6 5 10 10 N 1.40168 * 120.08269 * 179.97438 * 9 8 6 11 11 C 1.34773 * 120.00186 * 325.34478 * 10 9 8 12 12 O 1.21596 * 120.00121 * 4.44075 * 11 10 9 13 13 N 1.34774 * 119.99889 * 184.43419 * 11 10 9 14 14 C 1.46501 * 120.00294 * 0.02562 * 13 11 10 15 15 C 1.46503 * 120.00175 * 180.02562 * 13 11 10 16 16 C 1.50701 * 109.46995 * 89.99833 * 15 13 11 17 17 H 1.07996 * 120.00109 * 0.02562 * 16 15 13 18 18 C 1.37875 * 120.00041 * 180.02562 * 16 15 13 19 19 N 1.31518 * 120.00149 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 120.00380 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47254 * 59.99502 * 20 18 16 22 22 H 1.48498 * 109.47331 * 180.02562 * 20 18 16 23 23 H 1.48508 * 109.46696 * 300.00058 * 20 18 16 24 24 H 1.09005 * 109.46527 * 60.00448 * 1 2 3 25 25 H 1.08994 * 109.47020 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47366 * 300.00484 * 1 2 3 27 27 H 1.08001 * 119.99499 * 359.95455 * 4 3 2 28 28 H 1.07999 * 119.91369 * 179.72413 * 5 4 3 29 29 H 1.09000 * 109.46754 * 270.23497 * 7 6 5 30 30 H 1.09006 * 109.46935 * 30.23114 * 7 6 5 31 31 H 1.09001 * 109.47339 * 150.23124 * 7 6 5 32 32 H 1.07998 * 120.00941 * 179.76792 * 8 6 5 33 33 H 0.97001 * 119.99360 * 145.35139 * 10 9 8 34 34 H 1.09000 * 109.46923 * 90.00055 * 14 13 11 35 35 H 1.08997 * 109.47440 * 210.00051 * 14 13 11 36 36 H 1.09000 * 109.46926 * 330.00154 * 14 13 11 37 37 H 1.08998 * 109.47239 * 210.00127 * 15 13 11 38 38 H 1.08999 * 109.46997 * 330.00383 * 15 13 11 39 39 H 0.96993 * 120.00362 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2116 0.0000 4 6 1.2935 2.3746 -0.0005 5 6 1.9226 3.6056 -0.0054 6 6 3.3033 3.6807 0.0010 7 6 3.9831 5.0256 0.0019 8 6 4.0615 2.5251 0.0015 9 6 3.4372 1.2864 0.0011 10 7 4.2041 0.1131 0.0012 11 6 5.3767 0.0744 -0.6621 12 8 5.8086 1.0797 -1.1926 13 7 6.0706 -1.0785 -0.7373 14 6 5.5501 -2.2898 -0.0985 15 6 7.3456 -1.1205 -1.4578 16 6 8.4703 -0.7990 -0.5077 17 1 8.2569 -0.5852 0.5292 18 6 9.7718 -0.7777 -0.9621 19 7 10.0318 -1.0385 -2.2247 20 14 11.1661 -0.3799 0.2156 21 1 11.1860 -1.3786 1.3145 22 1 12.4583 -0.4211 -0.5150 23 1 10.9622 0.9770 0.7836 24 1 -0.3632 0.5138 -0.8901 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 0.2149 2.3195 -0.0017 28 1 1.3341 4.5112 -0.0103 29 1 4.1480 5.3500 -1.0255 30 1 3.3521 5.7513 0.5153 31 1 4.9407 4.9483 0.5168 32 1 5.1397 2.5865 0.0027 33 1 3.8907 -0.6710 0.4786 34 1 4.9237 -2.8331 -0.8059 35 1 6.3814 -2.9230 0.2116 36 1 4.9580 -2.0145 0.7743 37 1 7.4950 -2.1167 -1.8740 38 1 7.3311 -0.3879 -2.2648 39 1 10.9474 -1.0232 -2.5445 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000002172848.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:53:59 Heat of formation + Delta-G solvation = -31.286779 kcal Electronic energy + Delta-G solvation = -21661.726672 eV Core-core repulsion = 18377.325722 eV Total energy + Delta-G solvation = -3284.400949 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.54854 -39.13668 -37.48823 -35.02468 -34.35194 -32.54048 -31.59174 -29.64362 -27.88522 -27.60775 -25.91620 -25.65829 -23.40767 -22.05234 -21.01718 -19.33270 -18.25138 -17.36141 -16.56925 -16.43695 -15.97320 -15.72170 -14.95918 -14.60062 -14.21833 -14.11967 -13.78777 -13.67823 -13.54156 -13.03700 -12.74013 -12.26574 -12.16222 -12.11231 -11.92386 -11.78659 -11.46087 -11.20787 -11.07190 -10.89289 -10.84553 -10.52922 -10.12909 -9.94799 -9.61975 -9.16882 -8.40268 -8.30488 -7.75338 -7.40961 -6.00842 -4.05636 1.49497 1.53533 3.17904 3.33185 3.34389 3.38589 3.42782 3.72774 4.10165 4.43553 4.59128 4.81897 4.95205 5.02496 5.06281 5.21243 5.32872 5.33702 5.42413 5.52471 5.59677 5.78063 5.83477 5.91996 6.05867 6.08656 6.17382 6.32155 6.35844 6.70804 6.84244 6.89878 7.07189 7.39716 7.50559 7.56135 7.72984 7.97516 8.26647 8.64704 8.95129 9.30318 9.59753 11.06960 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.020860 B = 0.004652 C = 0.003997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1341.954092 B = 6017.137976 C = 7003.190117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.319 6.319 3 C 0.083 3.917 4 C -0.188 4.188 5 C -0.110 4.110 6 C -0.103 4.103 7 C -0.108 4.108 8 C -0.087 4.087 9 C 0.158 3.842 10 N -0.689 5.689 11 C 0.699 3.301 12 O -0.571 6.571 13 N -0.612 5.612 14 C 0.085 3.915 15 C 0.260 3.740 16 C -0.527 4.527 17 H 0.056 0.944 18 C 0.062 3.938 19 N -0.895 5.895 20 Si 0.898 3.102 21 H -0.277 1.277 22 H -0.286 1.286 23 H -0.276 1.276 24 H 0.053 0.947 25 H 0.096 0.904 26 H 0.052 0.948 27 H 0.127 0.873 28 H 0.120 0.880 29 H 0.068 0.932 30 H 0.061 0.939 31 H 0.067 0.933 32 H 0.153 0.847 33 H 0.404 0.596 34 H 0.045 0.955 35 H 0.078 0.922 36 H 0.050 0.950 37 H 0.034 0.966 38 H 0.045 0.955 39 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.402 3.690 6.106 20.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.233 6.233 3 C 0.036 3.964 4 C -0.207 4.207 5 C -0.129 4.129 6 C -0.104 4.104 7 C -0.164 4.164 8 C -0.108 4.108 9 C 0.061 3.939 10 N -0.339 5.339 11 C 0.401 3.599 12 O -0.448 6.448 13 N -0.347 5.347 14 C -0.059 4.059 15 C 0.141 3.859 16 C -0.566 4.566 17 H 0.075 0.925 18 C -0.140 4.140 19 N -0.534 5.534 20 Si 0.726 3.274 21 H -0.203 1.203 22 H -0.212 1.212 23 H -0.202 1.202 24 H 0.071 0.929 25 H 0.115 0.885 26 H 0.071 0.929 27 H 0.144 0.856 28 H 0.138 0.862 29 H 0.087 0.913 30 H 0.080 0.920 31 H 0.086 0.914 32 H 0.170 0.830 33 H 0.241 0.759 34 H 0.064 0.936 35 H 0.097 0.903 36 H 0.068 0.932 37 H 0.052 0.948 38 H 0.063 0.937 39 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -18.737 4.099 5.531 19.962 hybrid contribution 0.322 -0.226 0.850 0.936 sum -18.416 3.873 6.381 19.871 Atomic orbital electron populations 1.22982 0.78760 1.03577 1.01082 1.86030 1.21011 1.26727 1.89502 1.18753 0.90494 0.84761 1.02435 1.20899 0.99350 0.91813 1.08675 1.20693 0.93881 0.96710 1.01620 1.19743 0.93280 0.95387 1.01951 1.20706 1.00370 0.93054 1.02302 1.21264 1.01907 0.89239 0.98353 1.16887 0.86197 0.87112 1.03678 1.42779 1.21856 1.14031 1.55216 1.15907 0.79675 0.84744 0.79623 1.90869 1.69324 1.32969 1.51605 1.47478 1.24101 1.06780 1.56391 1.21580 0.99621 0.88591 0.96154 1.19242 0.76565 0.98047 0.92082 1.21425 0.91219 1.47829 0.96083 0.92532 1.24922 0.98692 0.95179 0.95245 1.69922 1.20278 1.49166 1.14075 0.86560 0.81060 0.79023 0.80763 1.20304 1.21192 1.20199 0.92871 0.88519 0.92922 0.85568 0.86161 0.91294 0.91992 0.91436 0.82966 0.75915 0.93643 0.90332 0.93177 0.94793 0.93657 0.92674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 9.81 101.05 0.99 1.25 16 2 O -0.32 -4.15 10.06 -19.69 -0.20 -4.35 16 3 C 0.08 1.21 6.70 -39.08 -0.26 0.95 16 4 C -0.19 -2.32 9.04 -39.47 -0.36 -2.68 16 5 C -0.11 -1.36 9.69 -39.56 -0.38 -1.75 16 6 C -0.10 -1.48 5.88 -104.62 -0.62 -2.09 16 7 C -0.11 -1.28 10.01 36.00 0.36 -0.92 16 8 C -0.09 -1.53 8.35 -39.42 -0.33 -1.86 16 9 C 0.16 2.74 6.32 -83.48 -0.53 2.21 16 10 N -0.69 -12.47 5.07 -14.10 -0.07 -12.54 16 11 C 0.70 15.67 8.13 -86.92 -0.71 14.96 16 12 O -0.57 -14.93 13.34 5.28 0.07 -14.86 16 13 N -0.61 -13.57 2.86 -188.74 -0.54 -14.11 16 14 C 0.08 1.40 10.24 59.85 0.61 2.01 16 15 C 0.26 6.94 5.16 -5.19 -0.03 6.91 16 16 C -0.53 -15.10 9.39 -34.44 -0.32 -15.42 16 17 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 18 C 0.06 1.77 5.46 -17.82 -0.10 1.68 16 19 N -0.90 -26.79 13.29 55.43 0.74 -26.06 16 20 Si 0.90 22.03 29.54 -169.99 -5.02 17.01 16 21 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 22 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 23 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 24 H 0.05 0.40 7.66 -51.93 -0.40 0.00 16 25 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.05 0.37 7.66 -51.93 -0.40 -0.03 16 27 H 0.13 1.17 6.30 -52.49 -0.33 0.84 16 28 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 29 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 30 H 0.06 0.59 8.09 -51.93 -0.42 0.17 16 31 H 0.07 0.82 8.08 -51.93 -0.42 0.40 16 32 H 0.15 3.09 6.20 -52.49 -0.33 2.77 16 33 H 0.40 6.22 6.26 -40.82 -0.26 5.97 16 34 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.08 1.30 8.07 -51.93 -0.42 0.88 16 36 H 0.05 0.69 6.30 -51.93 -0.33 0.36 16 37 H 0.03 0.91 8.07 -51.93 -0.42 0.49 16 38 H 0.05 1.36 7.42 -51.93 -0.39 0.97 16 39 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 328.36 15.07 4.95 4.95 Total: -1.00 -34.05 328.36 -7.07 -41.12 By element: Atomic # 1 Polarization: 8.90 SS G_CDS: -5.33 Total: 3.57 kcal Atomic # 6 Polarization: 6.92 SS G_CDS: -1.66 Total: 5.26 kcal Atomic # 7 Polarization: -52.82 SS G_CDS: 0.13 Total: -52.70 kcal Atomic # 8 Polarization: -19.08 SS G_CDS: -0.13 Total: -19.21 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -34.05 -7.07 -41.12 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000002172848.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.835 kcal (2) G-P(sol) polarization free energy of solvation -34.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.122 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds