Wall clock time and date at job start Mon Mar 30 2020 23:53:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35984 * 117.00037 * 2 1 4 4 C 1.38539 * 120.08143 * 359.97438 * 3 2 1 5 5 C 1.38247 * 120.01369 * 180.23304 * 4 3 2 6 6 C 1.38274 * 120.17773 * 359.48697 * 5 4 3 7 7 C 1.50697 * 119.92518 * 180.27858 * 6 5 4 8 8 C 1.38211 * 120.15801 * 0.51113 * 6 5 4 9 9 C 1.38714 * 119.98337 * 359.74498 * 8 6 5 10 10 N 1.40168 * 120.08269 * 179.97438 * 9 8 6 11 11 C 1.34773 * 120.00186 * 325.34478 * 10 9 8 12 12 O 1.21596 * 120.00121 * 4.44075 * 11 10 9 13 13 N 1.34774 * 119.99889 * 184.43419 * 11 10 9 14 14 C 1.46501 * 120.00294 * 0.02562 * 13 11 10 15 15 C 1.46503 * 120.00175 * 180.02562 * 13 11 10 16 16 C 1.50701 * 109.46995 * 89.99833 * 15 13 11 17 17 H 1.07996 * 120.00109 * 0.02562 * 16 15 13 18 18 C 1.37875 * 120.00041 * 180.02562 * 16 15 13 19 19 N 1.31518 * 120.00149 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 120.00380 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47254 * 59.99502 * 20 18 16 22 22 H 1.48498 * 109.47331 * 180.02562 * 20 18 16 23 23 H 1.48508 * 109.46696 * 300.00058 * 20 18 16 24 24 H 1.09005 * 109.46527 * 60.00448 * 1 2 3 25 25 H 1.08994 * 109.47020 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47366 * 300.00484 * 1 2 3 27 27 H 1.08001 * 119.99499 * 359.95455 * 4 3 2 28 28 H 1.07999 * 119.91369 * 179.72413 * 5 4 3 29 29 H 1.09000 * 109.46754 * 270.23497 * 7 6 5 30 30 H 1.09006 * 109.46935 * 30.23114 * 7 6 5 31 31 H 1.09001 * 109.47339 * 150.23124 * 7 6 5 32 32 H 1.07998 * 120.00941 * 179.76792 * 8 6 5 33 33 H 0.97001 * 119.99360 * 145.35139 * 10 9 8 34 34 H 1.09000 * 109.46923 * 90.00055 * 14 13 11 35 35 H 1.08997 * 109.47440 * 210.00051 * 14 13 11 36 36 H 1.09000 * 109.46926 * 330.00154 * 14 13 11 37 37 H 1.08998 * 109.47239 * 210.00127 * 15 13 11 38 38 H 1.08999 * 109.46997 * 330.00383 * 15 13 11 39 39 H 0.96993 * 120.00362 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2116 0.0000 4 6 1.2935 2.3746 -0.0005 5 6 1.9226 3.6056 -0.0054 6 6 3.3033 3.6807 0.0010 7 6 3.9831 5.0256 0.0019 8 6 4.0615 2.5251 0.0015 9 6 3.4372 1.2864 0.0011 10 7 4.2041 0.1131 0.0012 11 6 5.3767 0.0744 -0.6621 12 8 5.8086 1.0797 -1.1926 13 7 6.0706 -1.0785 -0.7373 14 6 5.5501 -2.2898 -0.0985 15 6 7.3456 -1.1205 -1.4578 16 6 8.4703 -0.7990 -0.5077 17 1 8.2569 -0.5852 0.5292 18 6 9.7718 -0.7777 -0.9621 19 7 10.0318 -1.0385 -2.2247 20 14 11.1661 -0.3799 0.2156 21 1 11.1860 -1.3786 1.3145 22 1 12.4583 -0.4211 -0.5150 23 1 10.9622 0.9770 0.7836 24 1 -0.3632 0.5138 -0.8901 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 0.2149 2.3195 -0.0017 28 1 1.3341 4.5112 -0.0103 29 1 4.1480 5.3500 -1.0255 30 1 3.3521 5.7513 0.5153 31 1 4.9407 4.9483 0.5168 32 1 5.1397 2.5865 0.0027 33 1 3.8907 -0.6710 0.4786 34 1 4.9237 -2.8331 -0.8059 35 1 6.3814 -2.9230 0.2116 36 1 4.9580 -2.0145 0.7743 37 1 7.4950 -2.1167 -1.8740 38 1 7.3311 -0.3879 -2.2648 39 1 10.9474 -1.0232 -2.5445 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000002172848.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:53:58 Heat of formation + Delta-G solvation = -54.021126 kcal Electronic energy + Delta-G solvation = -21662.712507 eV Core-core repulsion = 18377.325722 eV Total energy + Delta-G solvation = -3285.386784 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.85764 -40.53107 -38.54285 -36.75148 -35.93625 -34.64863 -32.62677 -31.00413 -29.47557 -28.69031 -27.39786 -26.75916 -25.24661 -23.45266 -22.18087 -20.93223 -19.46698 -18.77339 -18.60738 -17.90471 -17.12753 -16.80280 -16.59178 -16.36783 -15.66314 -15.27935 -15.01842 -14.86204 -14.76797 -14.46057 -14.32601 -13.91110 -13.50505 -13.27067 -13.16293 -13.07987 -12.87659 -12.73370 -12.54314 -12.46817 -12.19081 -12.05219 -11.79832 -11.73057 -11.29377 -10.90289 -10.63348 -9.63332 -9.36383 -8.67700 -8.20662 -6.36273 0.34484 0.43290 1.36812 1.41345 1.48594 1.72509 2.16129 2.35708 2.39986 2.83496 3.04281 3.09237 3.89712 3.99970 4.15295 4.26861 4.34174 4.47613 4.48291 4.49803 4.61360 4.74979 4.79614 4.80490 4.86063 4.90686 4.97435 5.10262 5.19304 5.24765 5.30966 5.53993 5.55562 5.74790 5.77399 5.91424 6.05880 6.06891 6.48434 6.71640 7.03581 7.30587 7.62389 8.85499 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.020860 B = 0.004652 C = 0.003997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1341.954092 B = 6017.137976 C = 7003.190117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.335 6.335 3 C 0.088 3.912 4 C -0.180 4.180 5 C -0.096 4.096 6 C -0.114 4.114 7 C -0.107 4.107 8 C -0.115 4.115 9 C 0.117 3.883 10 N -0.671 5.671 11 C 0.693 3.307 12 O -0.620 6.620 13 N -0.621 5.621 14 C 0.081 3.919 15 C 0.276 3.724 16 C -0.544 4.544 17 H 0.051 0.949 18 C 0.010 3.990 19 N -0.928 5.928 20 Si 0.968 3.032 21 H -0.260 1.260 22 H -0.276 1.276 23 H -0.279 1.279 24 H 0.063 0.937 25 H 0.117 0.883 26 H 0.071 0.929 27 H 0.166 0.834 28 H 0.161 0.839 29 H 0.069 0.931 30 H 0.094 0.906 31 H 0.053 0.947 32 H 0.110 0.890 33 H 0.416 0.584 34 H 0.070 0.930 35 H 0.077 0.923 36 H 0.080 0.920 37 H 0.030 0.970 38 H -0.001 1.001 39 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.102 4.013 7.687 23.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.250 6.250 3 C 0.040 3.960 4 C -0.199 4.199 5 C -0.114 4.114 6 C -0.115 4.115 7 C -0.163 4.163 8 C -0.135 4.135 9 C 0.022 3.978 10 N -0.322 5.322 11 C 0.395 3.605 12 O -0.500 6.500 13 N -0.355 5.355 14 C -0.062 4.062 15 C 0.155 3.845 16 C -0.583 4.583 17 H 0.069 0.931 18 C -0.189 4.189 19 N -0.567 5.567 20 Si 0.792 3.208 21 H -0.185 1.185 22 H -0.201 1.201 23 H -0.205 1.205 24 H 0.082 0.918 25 H 0.135 0.865 26 H 0.089 0.911 27 H 0.184 0.816 28 H 0.178 0.822 29 H 0.087 0.913 30 H 0.113 0.887 31 H 0.072 0.928 32 H 0.128 0.872 33 H 0.255 0.745 34 H 0.088 0.912 35 H 0.095 0.905 36 H 0.098 0.902 37 H 0.048 0.952 38 H 0.017 0.983 39 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -21.511 4.385 7.152 23.089 hybrid contribution 0.979 -0.310 0.342 1.082 sum -20.533 4.075 7.494 22.234 Atomic orbital electron populations 1.23357 0.76080 1.05556 1.02444 1.86013 1.23719 1.26029 1.89189 1.18779 0.89450 0.86330 1.01432 1.21372 1.01177 0.90738 1.06583 1.21150 0.92941 0.98445 0.98906 1.20027 0.94522 0.95097 1.01847 1.20747 1.00294 0.92676 1.02600 1.21090 1.00325 0.91220 1.00902 1.17167 0.87668 0.86398 1.06603 1.42426 1.20403 1.15067 1.54333 1.16095 0.80693 0.84052 0.79676 1.90831 1.70821 1.34701 1.53672 1.47362 1.22982 1.08652 1.56553 1.21853 1.00167 0.86567 0.97580 1.18710 0.78596 0.96071 0.91122 1.21666 0.92309 1.48240 0.96050 0.93088 1.25834 1.01381 0.94695 0.97021 1.70040 1.21101 1.49722 1.15860 0.85469 0.77720 0.78759 0.78839 1.18471 1.20134 1.20506 0.91816 0.86496 0.91051 0.81623 0.82184 0.91258 0.88745 0.92811 0.87160 0.74482 0.91193 0.90455 0.90153 0.95212 0.98270 0.92330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 9.81 113.37 1.11 1.36 16 2 O -0.34 -7.92 10.06 -93.37 -0.94 -8.86 16 3 C 0.09 2.41 6.70 22.59 0.15 2.56 16 4 C -0.18 -3.78 9.04 22.34 0.20 -3.58 16 5 C -0.10 -2.06 9.69 22.28 0.22 -1.84 16 6 C -0.11 -3.22 5.88 -19.86 -0.12 -3.34 16 7 C -0.11 -2.47 10.01 71.23 0.71 -1.76 16 8 C -0.11 -4.25 8.35 22.38 0.19 -4.07 16 9 C 0.12 4.14 6.32 38.17 0.24 4.38 16 10 N -0.67 -24.96 5.07 -316.80 -1.61 -26.56 16 11 C 0.69 32.75 8.13 179.06 1.45 34.21 16 12 O -0.62 -34.99 13.34 -4.02 -0.05 -35.04 16 13 N -0.62 -28.58 2.86 -869.31 -2.48 -31.06 16 14 C 0.08 2.63 10.24 127.77 1.31 3.93 16 15 C 0.28 15.56 5.16 85.63 0.44 16.00 16 16 C -0.54 -32.33 9.39 25.60 0.24 -32.09 16 17 H 0.05 3.01 7.81 -2.91 -0.02 2.99 16 18 C 0.01 0.58 5.46 84.65 0.46 1.04 16 19 N -0.93 -57.04 13.29 21.45 0.28 -56.76 16 20 Si 0.97 45.82 29.54 68.60 2.03 47.85 16 21 H -0.26 -11.54 7.11 99.48 0.71 -10.83 16 22 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 23 H -0.28 -13.29 7.11 99.48 0.71 -12.58 16 24 H 0.06 0.69 7.66 -2.38 -0.02 0.68 16 25 H 0.12 1.02 8.14 -2.39 -0.02 1.00 16 26 H 0.07 0.66 7.66 -2.39 -0.02 0.64 16 27 H 0.17 2.15 6.30 -2.91 -0.02 2.13 16 28 H 0.16 2.18 8.06 -2.91 -0.02 2.16 16 29 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 30 H 0.09 1.53 8.09 -2.38 -0.02 1.51 16 31 H 0.05 1.36 8.08 -2.39 -0.02 1.34 16 32 H 0.11 4.97 6.20 -2.91 -0.02 4.96 16 33 H 0.42 12.70 6.26 -92.71 -0.58 12.12 16 34 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 35 H 0.08 2.54 8.07 -2.39 -0.02 2.52 16 36 H 0.08 2.10 6.30 -2.39 -0.02 2.09 16 37 H 0.03 1.67 8.07 -2.39 -0.02 1.65 16 38 H 0.00 -0.05 7.42 -2.39 -0.02 -0.07 16 39 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 Total: -1.00 -79.34 328.36 4.33 -75.01 By element: Atomic # 1 Polarization: 18.12 SS G_CDS: 0.48 Total: 18.60 kcal Atomic # 6 Polarization: 10.21 SS G_CDS: 6.61 Total: 16.82 kcal Atomic # 7 Polarization: -110.57 SS G_CDS: -3.81 Total: -114.38 kcal Atomic # 8 Polarization: -42.91 SS G_CDS: -0.99 Total: -43.90 kcal Atomic # 14 Polarization: 45.82 SS G_CDS: 2.03 Total: 47.85 kcal Total: -79.34 4.33 -75.01 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000002172848.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.990 kcal (2) G-P(sol) polarization free energy of solvation -79.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.012 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds