Wall clock time and date at job start Tue Mar 31 2020 00:27:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 O 1.33645 * 125.80075 * 2 1 4 4 C 1.34217 * 110.90985 * 180.02562 * 3 2 1 5 5 C 1.34178 * 109.12279 * 359.74748 * 4 3 2 6 6 C 1.36413 * 125.79757 * 180.02562 * 2 1 3 7 7 C 1.47374 * 127.19696 * 359.93744 * 6 2 1 8 8 O 1.21615 * 120.00131 * 313.66460 * 7 6 2 9 9 N 1.34773 * 120.00358 * 133.66131 * 7 6 2 10 10 C 1.47080 * 120.88519 * 183.94971 * 9 7 6 11 11 C 1.53692 * 108.27634 * 128.75705 * 10 9 7 12 12 N 1.46899 * 109.25899 * 54.08678 * 11 10 9 13 13 C 1.46901 * 111.00251 * 172.60849 * 12 11 10 14 14 C 1.50703 * 109.47034 * 294.30132 * 13 12 11 15 15 H 1.08002 * 119.99834 * 359.97438 * 14 13 12 16 16 C 1.37867 * 119.99957 * 180.02562 * 14 13 12 17 17 N 1.31514 * 120.00179 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 120.00048 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.47062 * 359.97438 * 18 16 14 20 20 H 1.48493 * 109.47431 * 119.99462 * 18 16 14 21 21 H 1.48502 * 109.47013 * 239.99824 * 18 16 14 22 22 C 1.46903 * 111.26419 * 296.75508 * 12 11 10 23 23 C 1.47085 * 120.88030 * 4.22994 * 9 7 6 24 24 H 1.09005 * 109.46805 * 269.97053 * 1 2 3 25 25 H 1.08998 * 109.47310 * 29.97224 * 1 2 3 26 26 H 1.08999 * 109.47465 * 149.97072 * 1 2 3 27 27 H 1.07995 * 125.44430 * 180.02562 * 4 3 2 28 28 H 1.08005 * 127.02730 * 180.26921 * 5 4 3 29 29 H 1.09005 * 109.62900 * 248.52710 * 10 9 7 30 30 H 1.09001 * 109.62532 * 9.10489 * 10 9 7 31 31 H 1.09003 * 109.64901 * 294.07640 * 11 10 9 32 32 H 1.09008 * 109.42017 * 173.94741 * 11 10 9 33 33 H 1.09001 * 109.47226 * 54.29771 * 13 12 11 34 34 H 1.08994 * 109.47236 * 174.29972 * 13 12 11 35 35 H 0.97006 * 119.99917 * 180.02562 * 17 16 14 36 36 H 1.08998 * 109.49485 * 303.14357 * 22 12 11 37 37 H 1.09003 * 109.48976 * 183.06696 * 22 12 11 38 38 H 1.08997 * 109.62394 * 350.89765 * 23 9 7 39 39 H 1.09003 * 109.62635 * 111.47352 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2888 1.0839 0.0000 4 6 3.5859 0.7390 -0.0006 5 6 3.6849 -0.5991 0.0046 6 6 2.3050 -1.1064 -0.0005 7 6 1.8739 -2.5157 0.0002 8 8 1.0014 -2.8844 0.7629 9 7 2.4466 -3.3960 -0.8445 10 6 1.9730 -4.7864 -0.9213 11 6 1.7057 -5.1237 -2.3967 12 7 2.9104 -4.8341 -3.1859 13 6 2.7594 -5.3048 -4.5693 14 6 2.6672 -6.8090 -4.5808 15 1 2.7164 -7.3601 -3.6533 16 6 2.5212 -7.4815 -5.7755 17 7 2.4618 -6.8103 -6.9049 18 14 2.4077 -9.3460 -5.7899 19 1 2.5003 -9.8583 -4.3992 20 1 1.1109 -9.7584 -6.3844 21 1 3.5221 -9.9035 -6.5976 22 6 3.2398 -3.4029 -3.1498 23 6 3.5659 -2.9935 -1.7097 24 1 -0.3633 -0.0005 1.0277 25 1 -0.3634 0.8902 -0.5134 26 1 -0.3634 -0.8897 -0.5143 27 1 4.4173 1.4284 -0.0003 28 1 4.5928 -1.1841 0.0097 29 1 2.7352 -5.4554 -0.5218 30 1 1.0522 -4.8917 -0.3476 31 1 0.8755 -4.5214 -2.7659 32 1 1.4570 -6.1811 -2.4875 33 1 1.8517 -4.8819 -4.9999 34 1 3.6215 -4.9891 -5.1566 35 1 2.3587 -7.2835 -7.7454 36 1 2.3883 -2.8246 -3.5084 37 1 4.1036 -3.2124 -3.7867 38 1 3.6988 -1.9129 -1.6573 39 1 4.4783 -3.4935 -1.3845 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000056512729.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:27:34 Heat of formation + Delta-G solvation = -7.656931 kcal Electronic energy + Delta-G solvation = -21807.880706 eV Core-core repulsion = 18524.504423 eV Total energy + Delta-G solvation = -3283.376282 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 1.53 seconds Orbital eigenvalues (eV) -42.71368 -39.71273 -37.44345 -34.45509 -33.23628 -32.38802 -32.05288 -30.67631 -28.43579 -27.00073 -25.52915 -23.74971 -22.96117 -21.79845 -21.31833 -20.03727 -18.65628 -17.52103 -16.62736 -16.34780 -16.12168 -15.71644 -14.97509 -14.73387 -14.43378 -14.34613 -13.86413 -13.64505 -13.34634 -13.22673 -13.15506 -13.06751 -12.63136 -12.24420 -11.95739 -11.87866 -11.27899 -11.16323 -10.87641 -10.74918 -10.61430 -10.54483 -10.00101 -9.91388 -9.64296 -9.25625 -8.73811 -8.50368 -8.40436 -7.33760 -6.07241 -4.09044 1.38471 1.96519 2.65945 2.95408 3.27308 3.28851 3.36553 3.41165 4.35734 4.38784 4.59498 4.78419 4.82773 5.03586 5.27329 5.28293 5.30974 5.39071 5.39245 5.43988 5.57851 5.59978 5.66039 5.81538 5.94448 5.95930 6.02671 6.14300 6.21645 6.41474 6.52224 6.72832 6.88863 7.20914 7.26792 7.55955 7.74123 8.00043 8.10899 8.27503 8.46698 8.98618 9.55786 11.03645 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.033132 B = 0.003807 C = 0.003673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 844.910614 B = 7352.891210 C = 7621.562188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.059 3.941 3 O -0.177 6.177 4 C -0.039 4.039 5 C -0.187 4.187 6 C -0.231 4.231 7 C 0.588 3.412 8 O -0.547 6.547 9 N -0.598 5.598 10 C 0.116 3.884 11 C 0.052 3.948 12 N -0.536 5.536 13 C 0.193 3.807 14 C -0.509 4.509 15 H 0.065 0.935 16 C 0.056 3.944 17 N -0.898 5.898 18 Si 0.898 3.102 19 H -0.271 1.271 20 H -0.285 1.285 21 H -0.284 1.284 22 C 0.040 3.960 23 C 0.107 3.893 24 H 0.090 0.910 25 H 0.079 0.921 26 H 0.092 0.908 27 H 0.208 0.792 28 H 0.159 0.841 29 H 0.074 0.926 30 H 0.088 0.912 31 H 0.025 0.975 32 H 0.098 0.902 33 H -0.009 1.009 34 H 0.032 0.968 35 H 0.261 0.739 36 H 0.026 0.974 37 H 0.081 0.919 38 H 0.089 0.911 39 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.224 14.840 12.416 19.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.006 3.994 3 O -0.074 6.074 4 C -0.105 4.105 5 C -0.206 4.206 6 C -0.236 4.236 7 C 0.376 3.624 8 O -0.426 6.426 9 N -0.330 5.330 10 C -0.007 4.007 11 C -0.077 4.077 12 N -0.261 5.261 13 C 0.068 3.932 14 C -0.547 4.547 15 H 0.083 0.917 16 C -0.146 4.146 17 N -0.538 5.538 18 Si 0.726 3.274 19 H -0.196 1.196 20 H -0.211 1.211 21 H -0.210 1.210 22 C -0.089 4.089 23 C -0.016 4.016 24 H 0.109 0.891 25 H 0.098 0.902 26 H 0.111 0.889 27 H 0.224 0.776 28 H 0.176 0.824 29 H 0.092 0.908 30 H 0.107 0.893 31 H 0.043 0.957 32 H 0.116 0.884 33 H 0.009 0.991 34 H 0.050 0.950 35 H 0.071 0.929 36 H 0.044 0.956 37 H 0.099 0.901 38 H 0.107 0.893 39 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 1.038 14.628 12.816 19.476 hybrid contribution -0.284 -0.715 -0.710 1.047 sum 0.753 13.913 12.107 18.458 Atomic orbital electron populations 1.20423 0.84119 1.04294 1.04355 1.22611 0.93919 0.83053 0.99786 1.83738 1.17088 1.34840 1.71689 1.23846 0.83562 0.96296 1.06801 1.22893 0.96538 0.94355 1.06818 1.21152 0.93648 0.93952 1.14826 1.17298 0.81241 0.83845 0.80022 1.90763 1.32489 1.79323 1.40047 1.48082 1.34499 1.11309 1.39141 1.21985 1.00507 0.80364 0.97800 1.22427 0.91519 1.02616 0.91177 1.62092 1.34860 1.12517 1.16607 1.19732 0.95900 0.95839 0.81684 1.21182 1.49401 0.91103 0.93052 0.91716 1.24988 0.95373 0.98713 0.95483 1.69968 1.50494 1.35541 0.97763 0.86442 0.77538 0.85279 0.78177 1.19591 1.21102 1.21000 1.22393 1.00485 0.90982 0.95043 1.22133 0.88908 1.00413 0.90170 0.89122 0.90204 0.88928 0.77559 0.82362 0.90798 0.89347 0.95727 0.88423 0.99120 0.95042 0.92935 0.95593 0.90094 0.89290 0.90738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.76 10.04 36.01 0.36 -0.39 16 2 C 0.06 0.72 7.37 -34.96 -0.26 0.46 16 3 O -0.18 -1.95 10.52 7.67 0.08 -1.87 16 4 C -0.04 -0.35 12.03 29.30 0.35 0.00 16 5 C -0.19 -1.98 8.75 -37.45 -0.33 -2.31 16 6 C -0.23 -3.15 5.33 -103.27 -0.55 -3.70 16 7 C 0.59 9.52 7.25 -12.54 -0.09 9.43 16 8 O -0.55 -10.23 16.35 5.26 0.09 -10.14 16 9 N -0.60 -9.51 3.00 -173.47 -0.52 -10.03 16 10 C 0.12 1.93 6.62 -3.37 -0.02 1.91 16 11 C 0.05 1.00 5.47 -3.47 -0.02 0.98 16 12 N -0.54 -11.17 4.62 -235.47 -1.09 -12.25 16 13 C 0.19 4.91 4.72 -4.97 -0.02 4.89 16 14 C -0.51 -13.93 8.41 -34.44 -0.29 -14.22 16 15 H 0.06 1.75 7.13 -52.49 -0.37 1.38 16 16 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 17 N -0.90 -26.31 13.29 55.43 0.74 -25.57 16 18 Si 0.90 21.30 29.54 -169.99 -5.02 16.28 16 19 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 20 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 21 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 22 C 0.04 0.70 5.62 -3.70 -0.02 0.68 16 23 C 0.11 1.52 6.02 -3.60 -0.02 1.50 16 24 H 0.09 0.83 8.14 -51.93 -0.42 0.40 16 25 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 26 H 0.09 1.03 7.93 -51.93 -0.41 0.62 16 27 H 0.21 0.95 8.06 -52.49 -0.42 0.53 16 28 H 0.16 1.40 7.60 -52.48 -0.40 1.00 16 29 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 30 H 0.09 1.46 7.09 -51.93 -0.37 1.09 16 31 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.10 2.00 6.67 -51.92 -0.35 1.65 16 33 H -0.01 -0.25 8.12 -51.93 -0.42 -0.67 16 34 H 0.03 0.85 7.97 -51.93 -0.41 0.43 16 35 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 36 H 0.03 0.47 8.14 -51.93 -0.42 0.04 16 37 H 0.08 1.33 7.99 -51.93 -0.41 0.92 16 38 H 0.09 1.09 4.55 -51.93 -0.24 0.85 16 39 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 LS Contribution 321.99 15.07 4.85 4.85 Total: -1.00 -32.46 321.99 -7.36 -39.82 By element: Atomic # 1 Polarization: 3.72 SS G_CDS: -5.48 Total: -1.76 kcal Atomic # 6 Polarization: 1.69 SS G_CDS: -1.01 Total: 0.68 kcal Atomic # 7 Polarization: -46.99 SS G_CDS: -0.87 Total: -47.86 kcal Atomic # 8 Polarization: -12.18 SS G_CDS: 0.17 Total: -12.01 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -32.46 -7.36 -39.82 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000056512729.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.166 kcal (2) G-P(sol) polarization free energy of solvation -32.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.823 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.53 seconds