Wall clock time and date at job start Tue Mar 31 2020 00:27:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 O 1.33645 * 125.80075 * 2 1 4 4 C 1.34217 * 110.90985 * 180.02562 * 3 2 1 5 5 C 1.34178 * 109.12279 * 359.74748 * 4 3 2 6 6 C 1.36413 * 125.79757 * 180.02562 * 2 1 3 7 7 C 1.47374 * 127.19696 * 359.93744 * 6 2 1 8 8 O 1.21615 * 120.00131 * 313.66460 * 7 6 2 9 9 N 1.34773 * 120.00358 * 133.66131 * 7 6 2 10 10 C 1.47080 * 120.88519 * 183.94971 * 9 7 6 11 11 C 1.53692 * 108.27634 * 128.75705 * 10 9 7 12 12 N 1.46899 * 109.25899 * 54.08678 * 11 10 9 13 13 C 1.46901 * 111.00251 * 172.60849 * 12 11 10 14 14 C 1.50703 * 109.47034 * 294.30132 * 13 12 11 15 15 H 1.08002 * 119.99834 * 359.97438 * 14 13 12 16 16 C 1.37867 * 119.99957 * 180.02562 * 14 13 12 17 17 N 1.31514 * 120.00179 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 120.00048 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.47062 * 359.97438 * 18 16 14 20 20 H 1.48493 * 109.47431 * 119.99462 * 18 16 14 21 21 H 1.48502 * 109.47013 * 239.99824 * 18 16 14 22 22 C 1.46903 * 111.26419 * 296.75508 * 12 11 10 23 23 C 1.47085 * 120.88030 * 4.22994 * 9 7 6 24 24 H 1.09005 * 109.46805 * 269.97053 * 1 2 3 25 25 H 1.08998 * 109.47310 * 29.97224 * 1 2 3 26 26 H 1.08999 * 109.47465 * 149.97072 * 1 2 3 27 27 H 1.07995 * 125.44430 * 180.02562 * 4 3 2 28 28 H 1.08005 * 127.02730 * 180.26921 * 5 4 3 29 29 H 1.09005 * 109.62900 * 248.52710 * 10 9 7 30 30 H 1.09001 * 109.62532 * 9.10489 * 10 9 7 31 31 H 1.09003 * 109.64901 * 294.07640 * 11 10 9 32 32 H 1.09008 * 109.42017 * 173.94741 * 11 10 9 33 33 H 1.09001 * 109.47226 * 54.29771 * 13 12 11 34 34 H 1.08994 * 109.47236 * 174.29972 * 13 12 11 35 35 H 0.97006 * 119.99917 * 180.02562 * 17 16 14 36 36 H 1.08998 * 109.49485 * 303.14357 * 22 12 11 37 37 H 1.09003 * 109.48976 * 183.06696 * 22 12 11 38 38 H 1.08997 * 109.62394 * 350.89765 * 23 9 7 39 39 H 1.09003 * 109.62635 * 111.47352 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2888 1.0839 0.0000 4 6 3.5859 0.7390 -0.0006 5 6 3.6849 -0.5991 0.0046 6 6 2.3050 -1.1064 -0.0005 7 6 1.8739 -2.5157 0.0002 8 8 1.0014 -2.8844 0.7629 9 7 2.4466 -3.3960 -0.8445 10 6 1.9730 -4.7864 -0.9213 11 6 1.7057 -5.1237 -2.3967 12 7 2.9104 -4.8341 -3.1859 13 6 2.7594 -5.3048 -4.5693 14 6 2.6672 -6.8090 -4.5808 15 1 2.7164 -7.3601 -3.6533 16 6 2.5212 -7.4815 -5.7755 17 7 2.4618 -6.8103 -6.9049 18 14 2.4077 -9.3460 -5.7899 19 1 2.5003 -9.8583 -4.3992 20 1 1.1109 -9.7584 -6.3844 21 1 3.5221 -9.9035 -6.5976 22 6 3.2398 -3.4029 -3.1498 23 6 3.5659 -2.9935 -1.7097 24 1 -0.3633 -0.0005 1.0277 25 1 -0.3634 0.8902 -0.5134 26 1 -0.3634 -0.8897 -0.5143 27 1 4.4173 1.4284 -0.0003 28 1 4.5928 -1.1841 0.0097 29 1 2.7352 -5.4554 -0.5218 30 1 1.0522 -4.8917 -0.3476 31 1 0.8755 -4.5214 -2.7659 32 1 1.4570 -6.1811 -2.4875 33 1 1.8517 -4.8819 -4.9999 34 1 3.6215 -4.9891 -5.1566 35 1 2.3587 -7.2835 -7.7454 36 1 2.3883 -2.8246 -3.5084 37 1 4.1036 -3.2124 -3.7867 38 1 3.6988 -1.9129 -1.6573 39 1 4.4783 -3.4935 -1.3845 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000056512729.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:27:32 Heat of formation + Delta-G solvation = -29.754050 kcal Electronic energy + Delta-G solvation = -21808.838909 eV Core-core repulsion = 18524.504423 eV Total energy + Delta-G solvation = -3284.334485 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -43.55130 -41.02362 -38.94320 -36.03859 -34.52148 -34.03751 -32.88108 -32.03446 -30.13332 -28.06218 -27.12987 -25.10592 -24.30372 -23.43364 -22.33655 -21.35426 -19.73092 -18.67270 -18.43727 -17.62445 -17.17536 -16.80385 -16.64200 -16.21092 -16.00626 -15.49691 -15.31594 -15.28241 -14.49272 -14.40932 -14.13545 -13.95458 -13.88608 -13.75874 -13.43172 -13.06953 -12.78066 -12.72158 -12.61611 -12.36945 -12.35984 -12.19784 -11.75951 -11.34350 -11.16314 -10.65527 -10.59876 -9.85036 -9.50699 -9.08801 -8.21434 -6.31337 0.44715 1.15544 1.41850 1.42812 1.56039 1.70622 1.91058 2.12288 2.40460 3.10977 3.21173 3.47969 3.64394 3.95157 3.99033 4.01241 4.20394 4.24753 4.30713 4.39458 4.53750 4.55179 4.62922 4.68803 4.75960 4.80244 4.84476 4.90430 4.97975 5.14348 5.16309 5.20974 5.37219 5.44113 5.63557 6.01620 6.05569 6.18683 6.36328 6.55719 6.84339 7.02169 7.38724 8.90002 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.033132 B = 0.003807 C = 0.003673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 844.910614 B = 7352.891210 C = 7621.562188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.053 3.947 3 O -0.179 6.179 4 C -0.020 4.020 5 C -0.202 4.202 6 C -0.263 4.263 7 C 0.587 3.413 8 O -0.579 6.579 9 N -0.602 5.602 10 C 0.126 3.874 11 C 0.057 3.943 12 N -0.538 5.538 13 C 0.208 3.792 14 C -0.523 4.523 15 H 0.066 0.934 16 C 0.003 3.997 17 N -0.935 5.935 18 Si 0.968 3.032 19 H -0.262 1.262 20 H -0.281 1.281 21 H -0.278 1.278 22 C 0.038 3.962 23 C 0.118 3.882 24 H 0.097 0.903 25 H 0.103 0.897 26 H 0.075 0.925 27 H 0.253 0.747 28 H 0.176 0.824 29 H 0.083 0.917 30 H 0.089 0.911 31 H 0.010 0.990 32 H 0.083 0.917 33 H -0.042 1.042 34 H 0.011 0.989 35 H 0.264 0.736 36 H 0.015 0.985 37 H 0.090 0.910 38 H 0.116 0.884 39 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.486 15.738 13.571 20.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.000 4.000 3 O -0.075 6.075 4 C -0.085 4.085 5 C -0.221 4.221 6 C -0.268 4.268 7 C 0.378 3.622 8 O -0.461 6.461 9 N -0.334 5.334 10 C 0.004 3.996 11 C -0.072 4.072 12 N -0.262 5.262 13 C 0.082 3.918 14 C -0.561 4.561 15 H 0.084 0.916 16 C -0.195 4.195 17 N -0.575 5.575 18 Si 0.793 3.207 19 H -0.186 1.186 20 H -0.207 1.207 21 H -0.204 1.204 22 C -0.091 4.091 23 C -0.004 4.004 24 H 0.116 0.884 25 H 0.121 0.879 26 H 0.094 0.906 27 H 0.269 0.731 28 H 0.194 0.806 29 H 0.101 0.899 30 H 0.107 0.893 31 H 0.029 0.971 32 H 0.101 0.899 33 H -0.024 1.024 34 H 0.029 0.971 35 H 0.073 0.927 36 H 0.033 0.967 37 H 0.108 0.892 38 H 0.134 0.866 39 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 2.316 15.548 13.986 21.041 hybrid contribution -0.673 -0.890 -1.062 1.540 sum 1.643 14.659 12.924 19.612 Atomic orbital electron populations 1.20468 0.83333 1.04586 1.04895 1.22882 0.94725 0.83129 0.99226 1.83773 1.18038 1.34312 1.71415 1.24729 0.83478 0.96573 1.03743 1.23116 0.95674 0.95258 1.08034 1.21149 0.95835 0.92605 1.17162 1.17689 0.80438 0.84855 0.79260 1.90734 1.33895 1.80101 1.41376 1.48153 1.34921 1.10899 1.39419 1.21781 1.01004 0.81438 0.95407 1.22352 0.90571 1.01468 0.92778 1.62025 1.35286 1.15052 1.13878 1.19387 0.93326 0.95177 0.83899 1.21490 1.49232 0.92148 0.93238 0.91597 1.25887 0.94821 1.03761 0.95032 1.70089 1.51368 1.37610 0.98452 0.85344 0.77611 0.79155 0.78578 1.18587 1.20666 1.20389 1.22524 1.00357 0.88495 0.97682 1.22177 0.88635 1.02166 0.87455 0.88430 0.87867 0.90639 0.73106 0.80620 0.89852 0.89301 0.97132 0.89914 1.02396 0.97062 0.92693 0.96654 0.89191 0.86643 0.89246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.47 10.04 71.24 0.72 -0.76 16 2 C 0.05 1.22 7.37 25.26 0.19 1.40 16 3 O -0.18 -3.44 10.52 4.51 0.05 -3.39 16 4 C -0.02 -0.28 12.03 66.89 0.80 0.52 16 5 C -0.20 -3.66 8.75 23.65 0.21 -3.46 16 6 C -0.26 -6.77 5.33 -18.99 -0.10 -6.87 16 7 C 0.59 18.72 7.25 86.65 0.63 19.35 16 8 O -0.58 -21.80 16.35 -4.08 -0.07 -21.86 16 9 N -0.60 -18.68 3.00 -820.98 -2.47 -21.14 16 10 C 0.13 4.20 6.62 86.50 0.57 4.77 16 11 C 0.06 2.27 5.47 86.54 0.47 2.74 16 12 N -0.54 -22.73 4.62 -898.88 -4.15 -26.88 16 13 C 0.21 10.94 4.72 85.56 0.40 11.34 16 14 C -0.52 -29.12 8.41 25.60 0.22 -28.90 16 15 H 0.07 3.58 7.13 -2.91 -0.02 3.56 16 16 C 0.00 0.17 5.46 84.65 0.46 0.63 16 17 N -0.93 -55.73 13.29 21.44 0.28 -55.44 16 18 Si 0.97 43.79 29.54 68.60 2.03 45.82 16 19 H -0.26 -11.34 7.11 99.48 0.71 -10.63 16 20 H -0.28 -12.45 7.11 99.48 0.71 -11.75 16 21 H -0.28 -12.27 7.11 99.48 0.71 -11.57 16 22 C 0.04 1.31 5.62 86.38 0.49 1.80 16 23 C 0.12 3.15 6.02 86.35 0.52 3.67 16 24 H 0.10 1.71 8.14 -2.38 -0.02 1.69 16 25 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 26 H 0.07 1.70 7.93 -2.39 -0.02 1.69 16 27 H 0.25 0.94 8.06 -2.91 -0.02 0.92 16 28 H 0.18 2.46 7.60 -2.91 -0.02 2.44 16 29 H 0.08 2.63 8.14 -2.38 -0.02 2.61 16 30 H 0.09 2.96 7.09 -2.39 -0.02 2.94 16 31 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 32 H 0.08 3.49 6.67 -2.38 -0.02 3.47 16 33 H -0.04 -2.42 8.12 -2.39 -0.02 -2.44 16 34 H 0.01 0.63 7.97 -2.39 -0.02 0.61 16 35 H 0.26 14.79 8.31 -92.70 -0.77 14.02 16 36 H 0.02 0.56 8.14 -2.39 -0.02 0.54 16 37 H 0.09 2.90 7.99 -2.39 -0.02 2.88 16 38 H 0.12 2.54 4.55 -2.39 -0.01 2.52 16 39 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 Total: -1.00 -71.43 321.99 2.29 -69.14 By element: Atomic # 1 Polarization: 6.46 SS G_CDS: 1.05 Total: 7.51 kcal Atomic # 6 Polarization: 0.68 SS G_CDS: 5.57 Total: 6.25 kcal Atomic # 7 Polarization: -97.13 SS G_CDS: -6.33 Total: -103.46 kcal Atomic # 8 Polarization: -25.23 SS G_CDS: -0.02 Total: -25.25 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 2.03 Total: 45.82 kcal Total: -71.43 2.29 -69.14 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000056512729.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.386 kcal (2) G-P(sol) polarization free energy of solvation -71.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.140 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds