Wall clock time and date at job start Mon Mar 30 2020 23:51:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.36005 * 116.99661 * 2 1 4 4 C 1.38715 * 119.98115 * 0.02562 * 3 2 1 5 5 C 1.38096 * 120.01893 * 179.97438 * 4 3 2 6 6 C 1.38888 * 119.97716 * 0.02562 * 5 4 3 7 7 N 1.39935 * 120.01672 * 180.02562 * 6 5 4 8 8 C 1.46503 * 120.00203 * 0.02562 * 7 6 5 9 9 C 1.50697 * 109.47378 * 179.97438 * 8 7 6 10 10 O 1.21281 * 119.99925 * 359.97438 * 9 8 7 11 11 N 1.34781 * 120.00037 * 179.97438 * 9 8 7 12 12 C 1.46498 * 119.99596 * 179.97438 * 11 9 8 13 13 C 1.50702 * 109.46504 * 179.97438 * 12 11 9 14 14 H 1.07992 * 120.00492 * 0.02562 * 13 12 11 15 15 C 1.37884 * 119.99677 * 179.97438 * 13 12 11 16 16 N 1.31517 * 119.99936 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 119.99727 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.47109 * 60.00561 * 17 15 13 19 19 H 1.48506 * 109.46950 * 180.02562 * 17 15 13 20 20 H 1.48496 * 109.47628 * 300.00542 * 17 15 13 21 21 C 1.38841 * 119.96195 * 359.97438 * 6 5 4 22 22 C 1.50696 * 120.00453 * 180.02562 * 21 6 5 23 23 C 1.38127 * 119.97967 * 359.74390 * 21 6 5 24 24 H 1.09005 * 109.47329 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.47352 * 299.99796 * 1 2 3 26 26 H 1.08999 * 109.47144 * 59.99821 * 1 2 3 27 27 H 1.08000 * 119.99488 * 359.97438 * 4 3 2 28 28 H 1.07992 * 120.01142 * 180.02562 * 5 4 3 29 29 H 0.96997 * 120.00158 * 179.97438 * 7 6 5 30 30 H 1.09007 * 109.46962 * 299.99935 * 8 7 6 31 31 H 1.09001 * 109.47172 * 59.99620 * 8 7 6 32 32 H 0.97001 * 119.99768 * 359.97438 * 11 9 8 33 33 H 1.08993 * 109.47664 * 299.99804 * 12 11 9 34 34 H 1.09001 * 109.47233 * 60.00066 * 12 11 9 35 35 H 0.97000 * 119.99669 * 179.97438 * 16 15 13 36 36 H 1.09009 * 109.47116 * 90.00336 * 22 21 6 37 37 H 1.09003 * 109.47050 * 209.99473 * 22 21 6 38 38 H 1.08996 * 109.47876 * 330.00315 * 22 21 6 39 39 H 1.08003 * 119.99012 * 180.25576 * 23 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2118 0.0000 4 6 1.2904 2.3749 0.0005 5 6 1.9165 3.6058 0.0011 6 6 3.3035 3.6789 0.0005 7 7 3.9387 4.9258 0.0016 8 6 3.1408 6.1545 0.0039 9 6 4.0587 7.3496 0.0053 10 8 5.2611 7.1907 0.0050 11 7 3.5435 8.5951 0.0069 12 6 4.4360 9.7568 0.0089 13 6 3.6151 11.0207 0.0098 14 1 2.5367 10.9642 0.0095 15 6 4.2411 12.2492 0.0122 16 7 5.5545 12.3181 0.0131 17 14 3.2236 13.8158 0.0141 18 1 2.3663 13.8477 1.2262 19 1 4.1282 14.9935 0.0159 20 1 2.3676 13.8516 -1.1987 21 6 4.0592 2.5143 0.0000 22 6 5.5642 2.5925 0.0000 23 6 3.4313 1.2840 0.0053 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 0.2120 2.3179 0.0005 28 1 1.3279 4.5112 0.0019 29 1 4.9073 4.9766 0.0016 30 1 2.5112 6.1805 -0.8856 31 1 2.5127 6.1782 0.8944 32 1 2.5819 8.7221 0.0068 33 1 5.0645 9.7308 0.8989 34 1 5.0651 9.7332 -0.8810 35 1 5.9948 13.1824 0.0144 36 1 5.9271 2.6108 1.0277 37 1 5.9732 1.7227 -0.5142 38 1 5.8809 3.5003 -0.5133 39 1 4.0191 0.3779 0.0091 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000061567844.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:51:55 Heat of formation + Delta-G solvation = -77.344025 kcal Electronic energy + Delta-G solvation = -20464.212535 eV Core-core repulsion = 17177.814394 eV Total energy + Delta-G solvation = -3286.398141 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.20580 -40.56969 -38.94880 -36.30501 -35.56623 -34.39757 -33.48582 -30.99890 -29.70016 -28.33142 -27.38631 -26.89023 -24.62466 -22.90514 -21.90790 -21.41443 -19.35121 -18.56636 -18.20286 -17.55740 -17.01618 -16.74776 -16.73652 -16.46993 -16.21805 -15.51337 -15.11148 -15.05435 -14.46468 -14.38232 -14.15974 -14.04829 -13.88073 -13.63602 -13.53635 -12.98964 -12.95914 -12.76450 -12.68307 -12.54260 -12.25052 -12.02856 -11.59917 -11.52604 -10.92752 -10.80629 -10.48098 -9.89574 -9.69970 -8.29906 -8.01524 -6.46501 0.41244 0.72334 1.43711 1.47350 1.55527 1.62942 2.09885 2.39120 2.55857 2.78603 2.89834 3.05326 3.82138 3.91575 3.96604 4.25317 4.32508 4.40083 4.41316 4.45516 4.48735 4.60163 4.69033 4.79037 4.80104 5.01092 5.07621 5.12309 5.22128 5.29763 5.43884 5.46195 5.50316 5.63556 5.77048 5.82701 6.30227 6.60360 6.64049 6.75300 6.85839 7.21535 7.39428 8.81940 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.035776 B = 0.002747 C = 0.002558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 782.465506 B =10192.293026 C =10943.706658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.341 6.341 3 C 0.057 3.943 4 C -0.162 4.162 5 C -0.164 4.164 6 C 0.173 3.827 7 N -0.744 5.744 8 C 0.120 3.880 9 C 0.491 3.509 10 O -0.597 6.597 11 N -0.700 5.700 12 C 0.266 3.734 13 C -0.557 4.557 14 H 0.086 0.914 15 C 0.003 3.997 16 N -0.931 5.931 17 Si 0.984 3.016 18 H -0.262 1.262 19 H -0.287 1.287 20 H -0.262 1.262 21 C -0.133 4.133 22 C -0.107 4.107 23 C -0.114 4.114 24 H 0.114 0.886 25 H 0.060 0.940 26 H 0.060 0.940 27 H 0.149 0.851 28 H 0.143 0.857 29 H 0.403 0.597 30 H 0.112 0.888 31 H 0.112 0.888 32 H 0.412 0.588 33 H -0.011 1.011 34 H -0.011 1.011 35 H 0.269 0.731 36 H 0.072 0.928 37 H 0.082 0.918 38 H 0.055 0.945 39 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.788 -21.578 -0.003 25.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.256 6.256 3 C 0.011 3.989 4 C -0.181 4.181 5 C -0.186 4.186 6 C 0.071 3.929 7 N -0.379 5.379 8 C -0.008 4.008 9 C 0.278 3.722 10 O -0.479 6.479 11 N -0.350 5.350 12 C 0.143 3.857 13 C -0.594 4.594 14 H 0.104 0.896 15 C -0.196 4.196 16 N -0.569 5.569 17 Si 0.807 3.193 18 H -0.186 1.186 19 H -0.213 1.213 20 H -0.186 1.186 21 C -0.138 4.138 22 C -0.164 4.164 23 C -0.133 4.133 24 H 0.133 0.867 25 H 0.079 0.921 26 H 0.079 0.921 27 H 0.166 0.834 28 H 0.161 0.839 29 H 0.241 0.759 30 H 0.130 0.870 31 H 0.130 0.870 32 H 0.249 0.751 33 H 0.007 0.993 34 H 0.007 0.993 35 H 0.077 0.923 36 H 0.090 0.910 37 H 0.101 0.899 38 H 0.074 0.926 39 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -11.850 -21.570 -0.004 24.611 hybrid contribution -0.021 1.264 0.000 1.264 sum -11.870 -20.307 -0.004 23.522 Atomic orbital electron populations 1.23241 0.77093 1.05111 1.01908 1.86016 1.22874 1.26831 1.89859 1.18909 0.92337 0.84693 1.02980 1.21202 1.00744 0.91163 1.04984 1.20700 0.91900 0.98780 1.07259 1.17769 0.92295 0.84760 0.98051 1.44506 1.08873 1.01347 1.83190 1.21066 0.92803 0.81525 1.05387 1.21277 0.89285 0.85731 0.75879 1.90633 1.17937 1.86542 1.52809 1.46097 1.11468 1.05278 1.72185 1.18567 0.89736 0.83123 0.94259 1.21595 0.94315 0.90573 1.52962 0.89570 1.26067 0.96165 1.03532 0.93879 1.70129 1.10136 1.26781 1.49904 0.85212 0.77939 0.76580 0.79532 1.18611 1.21288 1.18622 1.19350 0.96457 0.91002 1.06948 1.20640 0.90315 1.02830 1.02591 1.20169 0.91758 0.97383 1.04016 0.86745 0.92094 0.92100 0.83363 0.83915 0.75893 0.87021 0.87007 0.75130 0.99293 0.99302 0.92263 0.90980 0.89880 0.92646 0.84558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 9.81 113.37 1.11 1.35 16 2 O -0.34 -6.91 10.50 -93.60 -0.98 -7.89 16 3 C 0.06 1.25 6.69 22.49 0.15 1.40 16 4 C -0.16 -3.15 9.03 22.35 0.20 -2.95 16 5 C -0.16 -3.45 9.31 22.39 0.21 -3.24 16 6 C 0.17 4.31 6.64 38.15 0.25 4.57 16 7 N -0.74 -20.34 5.61 -342.97 -1.92 -22.26 16 8 C 0.12 3.03 5.39 85.63 0.46 3.49 16 9 C 0.49 18.41 7.90 87.66 0.69 19.10 16 10 O -0.60 -28.07 15.67 -3.03 -0.05 -28.12 16 11 N -0.70 -27.75 5.55 -466.79 -2.59 -30.34 16 12 C 0.27 14.16 5.43 85.63 0.46 14.62 16 13 C -0.56 -29.41 9.28 25.60 0.24 -29.17 16 14 H 0.09 4.05 7.60 -2.91 -0.02 4.03 16 15 C 0.00 0.18 5.46 84.66 0.46 0.64 16 16 N -0.93 -55.44 13.29 21.45 0.28 -55.15 16 17 Si 0.98 41.44 29.54 68.60 2.03 43.47 16 18 H -0.26 -10.40 7.11 99.48 0.71 -9.69 16 19 H -0.29 -12.11 7.11 99.48 0.71 -11.40 16 20 H -0.26 -10.41 7.11 99.48 0.71 -9.70 16 21 C -0.13 -3.19 5.90 -19.75 -0.12 -3.30 16 22 C -0.11 -2.28 9.57 71.23 0.68 -1.60 16 23 C -0.11 -2.59 9.63 22.35 0.22 -2.37 16 24 H 0.11 0.83 8.14 -2.38 -0.02 0.81 16 25 H 0.06 0.59 7.66 -2.39 -0.02 0.58 16 26 H 0.06 0.59 7.66 -2.39 -0.02 0.57 16 27 H 0.15 2.06 6.29 -2.91 -0.02 2.04 16 28 H 0.14 2.39 6.73 -2.91 -0.02 2.37 16 29 H 0.40 12.45 5.43 -92.71 -0.50 11.94 16 30 H 0.11 2.26 7.95 -2.38 -0.02 2.24 16 31 H 0.11 2.26 7.95 -2.39 -0.02 2.24 16 32 H 0.41 12.98 8.32 -92.71 -0.77 12.21 16 33 H -0.01 -0.66 8.14 -2.39 -0.02 -0.68 16 34 H -0.01 -0.66 8.14 -2.39 -0.02 -0.68 16 35 H 0.27 15.00 8.31 -92.71 -0.77 14.23 16 36 H 0.07 1.47 8.14 -2.38 -0.02 1.45 16 37 H 0.08 1.46 8.09 -2.39 -0.02 1.44 16 38 H 0.05 1.30 6.54 -2.39 -0.02 1.28 16 39 H 0.14 2.70 8.06 -2.91 -0.02 2.68 16 Total: -1.00 -71.41 330.65 1.60 -69.81 By element: Atomic # 1 Polarization: 28.15 SS G_CDS: -0.20 Total: 27.95 kcal Atomic # 6 Polarization: -2.49 SS G_CDS: 5.03 Total: 2.53 kcal Atomic # 7 Polarization: -103.53 SS G_CDS: -4.23 Total: -107.76 kcal Atomic # 8 Polarization: -34.98 SS G_CDS: -1.03 Total: -36.01 kcal Atomic # 14 Polarization: 41.44 SS G_CDS: 2.03 Total: 43.47 kcal Total: -71.41 1.60 -69.81 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000061567844.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.532 kcal (2) G-P(sol) polarization free energy of solvation -71.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.812 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds