Wall clock time and date at job start Mon Mar 30 2020 23:55:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38254 * 120.00382 * 2 1 4 4 C 1.50697 * 119.99853 * 359.97438 * 3 2 1 5 5 N 1.46905 * 109.47221 * 283.08813 * 4 3 2 6 6 C 1.46898 * 111.00338 * 292.66324 * 5 4 3 7 7 C 1.46900 * 111.00090 * 168.70317 * 5 4 3 8 8 H 1.08997 * 109.47305 * 310.00351 * 7 5 4 9 9 C 1.52998 * 109.47062 * 70.00490 * 7 5 4 10 10 C 1.50700 * 109.47112 * 190.00411 * 7 5 4 11 11 H 1.08001 * 119.99840 * 0.02562 * 10 7 5 12 12 C 1.37874 * 120.00082 * 180.02562 * 10 7 5 13 13 N 1.31513 * 120.00132 * 179.97438 * 12 10 7 14 14 Si 1.86804 * 119.99690 * 359.97438 * 12 10 7 15 15 H 1.48500 * 109.46916 * 90.00609 * 14 12 10 16 16 H 1.48503 * 109.46618 * 209.99996 * 14 12 10 17 17 H 1.48495 * 109.47113 * 329.99814 * 14 12 10 18 18 C 1.38220 * 120.00189 * 179.72521 * 3 2 1 19 19 C 1.38255 * 119.99694 * 0.24727 * 18 3 2 20 20 C 1.38215 * 120.00241 * 0.02562 * 19 18 3 21 21 C 1.38219 * 119.99833 * 180.22411 * 2 1 3 22 22 N 1.48015 * 120.00065 * 0.03096 * 21 2 1 23 23 O 1.21804 * 120.00059 * 187.09598 * 22 21 2 24 24 O 1.21803 * 119.99892 * 7.08749 * 22 21 2 25 25 H 1.09000 * 109.46737 * 97.00260 * 1 2 3 26 26 H 1.08990 * 109.47315 * 217.00400 * 1 2 3 27 27 H 1.08997 * 109.46952 * 337.01024 * 1 2 3 28 28 H 1.09000 * 109.47287 * 163.09579 * 4 3 2 29 29 H 1.08998 * 109.47302 * 43.09162 * 4 3 2 30 30 H 1.08993 * 109.47160 * 62.30809 * 6 5 4 31 31 H 1.09008 * 109.46610 * 302.31449 * 6 5 4 32 32 H 1.08998 * 109.47097 * 182.31437 * 6 5 4 33 33 H 1.09000 * 109.47119 * 180.02562 * 9 7 5 34 34 H 1.09002 * 109.47201 * 300.00144 * 9 7 5 35 35 H 1.08997 * 109.47174 * 59.99781 * 9 7 5 36 36 H 0.97006 * 119.99910 * 179.97438 * 13 12 10 37 37 H 1.07997 * 119.99926 * 180.27442 * 18 3 2 38 38 H 1.08001 * 119.99676 * 179.97438 * 19 18 3 39 39 H 1.08000 * 119.99680 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 1.4449 2.5024 -0.0006 5 7 0.9290 2.7694 -1.3499 6 6 2.0263 3.0298 -2.2912 7 6 -0.0287 3.8832 -1.3365 8 1 -0.7710 3.7148 -0.5563 9 6 0.7145 5.1915 -1.0594 10 6 -0.7170 3.9700 -2.6743 11 1 -0.4681 3.2678 -3.4562 12 6 -1.6643 4.9460 -2.9002 13 7 -2.2646 5.0221 -4.0678 14 14 -2.0952 6.1602 -1.5475 15 1 -1.2087 7.3474 -1.6472 16 1 -3.5103 6.5852 -1.6963 17 1 -1.9092 5.5132 -0.2239 18 6 3.5805 1.1972 0.0057 19 6 4.2717 -0.0001 0.0063 20 6 3.5806 -1.1971 0.0006 21 6 2.1980 -1.1970 -0.0047 22 7 1.4579 -2.4788 -0.0104 23 8 2.0599 -3.5302 0.1158 24 8 0.2470 -2.4823 -0.1411 25 1 -0.3633 -0.1253 -1.0200 26 1 -0.3633 -0.8206 0.6185 27 1 -0.3633 0.9460 0.4014 28 1 2.1147 3.3087 0.2983 29 1 0.6130 2.4420 0.7011 30 1 2.6595 2.1458 -2.3646 31 1 2.6187 3.8724 -1.9343 32 1 1.6148 3.2648 -3.2728 33 1 0.0038 6.0179 -1.0490 34 1 1.2123 5.1287 -0.0918 35 1 1.4568 5.3599 -1.8396 36 1 -2.9314 5.7086 -4.2266 37 1 4.1205 2.1325 0.0102 38 1 5.3517 -0.0002 0.0104 39 1 4.1206 -2.1324 0.0006 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000063095304.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:55:31 Heat of formation + Delta-G solvation = 39.604745 kcal Electronic energy + Delta-G solvation = -22080.097605 eV Core-core repulsion = 18798.770743 eV Total energy + Delta-G solvation = -3281.326862 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.15992 -39.92618 -37.42866 -36.56015 -33.50651 -32.92009 -31.98095 -29.67551 -27.90836 -26.97541 -25.81264 -25.36125 -23.90435 -22.19029 -21.12091 -19.45373 -18.60661 -18.49182 -17.49358 -16.72121 -16.25028 -15.98005 -15.54746 -14.76721 -14.24853 -13.98264 -13.64498 -13.46685 -13.05973 -12.74463 -12.63028 -12.34095 -12.29079 -12.21486 -11.81987 -11.54820 -11.39698 -11.29664 -11.05977 -11.02303 -10.93404 -10.50476 -10.33101 -10.12748 -9.65758 -9.51107 -9.19185 -8.96485 -8.65813 -7.55605 -6.13510 -4.12514 -0.08161 0.91051 1.39394 1.50668 3.18554 3.21002 3.28018 3.32462 4.29401 4.31897 4.36933 4.56248 4.69654 4.84451 4.92552 5.06343 5.18009 5.40657 5.46680 5.59968 5.69967 5.80094 5.88980 5.96533 5.99512 6.03330 6.11371 6.15052 6.19135 6.30380 6.35318 6.41441 6.55586 6.68261 6.74528 7.03288 7.50262 7.75394 7.76132 7.88378 8.55153 8.94273 9.47632 10.99479 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.025116 B = 0.004765 C = 0.004336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1114.578189 B = 5874.735255 C = 6455.807684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.015 3.985 3 C -0.070 4.070 4 C 0.084 3.916 5 N -0.515 5.515 6 C 0.031 3.969 7 C 0.182 3.818 8 H 0.040 0.960 9 C -0.187 4.187 10 C -0.503 4.503 11 H 0.082 0.918 12 C 0.071 3.929 13 N -0.897 5.897 14 Si 0.885 3.115 15 H -0.281 1.281 16 H -0.296 1.296 17 H -0.269 1.269 18 C -0.061 4.061 19 C -0.130 4.130 20 C -0.061 4.061 21 C -0.054 4.054 22 N 0.035 4.965 23 O -0.183 6.183 24 O -0.152 6.152 25 H 0.099 0.901 26 H 0.086 0.914 27 H 0.080 0.920 28 H 0.043 0.957 29 H 0.086 0.914 30 H 0.044 0.956 31 H 0.018 0.982 32 H 0.083 0.917 33 H 0.046 0.954 34 H 0.027 0.973 35 H 0.057 0.943 36 H 0.265 0.735 37 H 0.137 0.863 38 H 0.142 0.858 39 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.619 -7.035 10.269 17.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.013 3.987 3 C -0.072 4.072 4 C -0.044 4.044 5 N -0.238 5.238 6 C -0.117 4.117 7 C 0.075 3.925 8 H 0.058 0.942 9 C -0.246 4.246 10 C -0.541 4.541 11 H 0.100 0.900 12 C -0.131 4.131 13 N -0.535 5.535 14 Si 0.716 3.284 15 H -0.208 1.208 16 H -0.223 1.223 17 H -0.194 1.194 18 C -0.080 4.080 19 C -0.148 4.148 20 C -0.080 4.080 21 C -0.137 4.137 22 N 0.550 4.450 23 O -0.393 6.393 24 O -0.369 6.369 25 H 0.118 0.882 26 H 0.104 0.896 27 H 0.098 0.902 28 H 0.061 0.939 29 H 0.104 0.896 30 H 0.063 0.937 31 H 0.037 0.963 32 H 0.102 0.898 33 H 0.064 0.936 34 H 0.046 0.954 35 H 0.076 0.924 36 H 0.075 0.925 37 H 0.155 0.845 38 H 0.160 0.840 39 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 12.579 -6.775 9.994 17.436 hybrid contribution 0.123 1.234 0.845 1.501 sum 12.702 -5.541 10.839 17.593 Atomic orbital electron populations 1.21297 0.87964 1.03990 1.05149 1.19798 0.98549 0.89556 0.90834 1.19909 0.93216 0.94807 0.99233 1.21126 0.97927 0.91037 0.94274 1.62225 1.14703 1.43287 1.03582 1.22322 0.92945 0.97770 0.98699 1.19821 0.89895 0.83727 0.99098 0.94177 1.22846 1.01122 1.01781 0.98834 1.20874 1.20727 1.15470 0.97033 0.89966 1.24908 0.95703 0.97284 0.95198 1.69872 1.26935 1.34466 1.22237 0.86906 0.76626 0.81810 0.83048 1.20829 1.22335 1.19402 1.21550 0.93765 0.98908 0.93761 1.21065 1.00614 0.90888 1.02273 1.20938 0.90930 1.00578 0.95562 1.20961 0.92371 0.83170 1.17213 1.43591 1.01172 1.02728 0.97479 1.94499 1.70191 1.20381 1.54214 1.94511 0.96309 1.93831 1.52237 0.88242 0.89569 0.90156 0.93922 0.89571 0.93713 0.96349 0.89804 0.93553 0.95410 0.92384 0.92545 0.84475 0.83993 0.83495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.85 8.33 36.00 0.30 -1.55 16 2 C 0.01 0.20 5.88 -104.62 -0.62 -0.41 16 3 C -0.07 -0.91 4.52 -104.62 -0.47 -1.38 16 4 C 0.08 1.22 3.89 -4.97 -0.02 1.20 16 5 N -0.52 -9.40 4.65 -237.73 -1.11 -10.51 16 6 C 0.03 0.53 8.37 60.06 0.50 1.03 16 7 C 0.18 3.92 1.90 -68.87 -0.13 3.79 16 8 H 0.04 0.90 6.97 -51.93 -0.36 0.54 16 9 C -0.19 -3.72 7.93 37.16 0.29 -3.43 16 10 C -0.50 -13.25 8.46 -34.44 -0.29 -13.54 16 11 H 0.08 2.40 7.39 -52.49 -0.39 2.01 16 12 C 0.07 1.95 5.45 -17.82 -0.10 1.86 16 13 N -0.90 -26.53 13.96 55.43 0.77 -25.76 16 14 Si 0.89 20.96 24.37 -169.99 -4.14 16.82 16 15 H -0.28 -6.52 6.87 56.52 0.39 -6.13 16 16 H -0.30 -7.11 7.11 56.52 0.40 -6.71 16 17 H -0.27 -6.03 6.53 56.52 0.37 -5.66 16 18 C -0.06 -0.63 9.09 -39.58 -0.36 -0.99 16 19 C -0.13 -1.18 10.05 -39.58 -0.40 -1.58 16 20 C -0.06 -0.66 9.56 -39.58 -0.38 -1.04 16 21 C -0.05 -0.73 6.83 -79.95 -0.55 -1.28 16 22 N 0.03 0.53 4.45 33.96 0.15 0.69 16 23 O -0.18 -2.82 18.47 -29.46 -0.54 -3.37 16 24 O -0.15 -2.47 15.39 -29.46 -0.45 -2.92 16 25 H 0.10 1.60 8.14 -51.93 -0.42 1.17 16 26 H 0.09 1.20 5.92 -51.93 -0.31 0.89 16 27 H 0.08 1.14 5.96 -51.93 -0.31 0.84 16 28 H 0.04 0.57 6.91 -51.93 -0.36 0.21 16 29 H 0.09 1.23 6.33 -51.93 -0.33 0.90 16 30 H 0.04 0.68 6.98 -51.93 -0.36 0.32 16 31 H 0.02 0.29 6.57 -51.92 -0.34 -0.05 16 32 H 0.08 1.66 6.71 -51.93 -0.35 1.31 16 33 H 0.05 0.99 3.27 -51.93 -0.17 0.82 16 34 H 0.03 0.46 6.94 -51.93 -0.36 0.10 16 35 H 0.06 1.13 6.47 -51.93 -0.34 0.80 16 36 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 37 H 0.14 1.13 8.01 -52.49 -0.42 0.71 16 38 H 0.14 0.84 8.06 -52.49 -0.42 0.42 16 39 H 0.15 1.36 7.63 -52.49 -0.40 0.96 16 LS Contribution 308.61 15.07 4.65 4.65 Total: -1.00 -29.53 308.61 -7.70 -37.23 By element: Atomic # 1 Polarization: 5.31 SS G_CDS: -4.82 Total: 0.49 kcal Atomic # 6 Polarization: -15.11 SS G_CDS: -2.21 Total: -17.32 kcal Atomic # 7 Polarization: -35.40 SS G_CDS: -0.18 Total: -35.58 kcal Atomic # 8 Polarization: -5.29 SS G_CDS: -1.00 Total: -6.29 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -4.14 Total: 16.82 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -29.53 -7.70 -37.23 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063095304.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.837 kcal (2) G-P(sol) polarization free energy of solvation -29.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.233 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds