Wall clock time and date at job start Mon Mar 30 2020 23:55:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38254 * 120.00382 * 2 1 4 4 C 1.50697 * 119.99853 * 359.97438 * 3 2 1 5 5 N 1.46905 * 109.47221 * 283.08813 * 4 3 2 6 6 C 1.46898 * 111.00338 * 292.66324 * 5 4 3 7 7 C 1.46900 * 111.00090 * 168.70317 * 5 4 3 8 8 H 1.08997 * 109.47305 * 310.00351 * 7 5 4 9 9 C 1.52998 * 109.47062 * 70.00490 * 7 5 4 10 10 C 1.50700 * 109.47112 * 190.00411 * 7 5 4 11 11 H 1.08001 * 119.99840 * 0.02562 * 10 7 5 12 12 C 1.37874 * 120.00082 * 180.02562 * 10 7 5 13 13 N 1.31513 * 120.00132 * 179.97438 * 12 10 7 14 14 Si 1.86804 * 119.99690 * 359.97438 * 12 10 7 15 15 H 1.48500 * 109.46916 * 90.00609 * 14 12 10 16 16 H 1.48503 * 109.46618 * 209.99996 * 14 12 10 17 17 H 1.48495 * 109.47113 * 329.99814 * 14 12 10 18 18 C 1.38220 * 120.00189 * 179.72521 * 3 2 1 19 19 C 1.38255 * 119.99694 * 0.24727 * 18 3 2 20 20 C 1.38215 * 120.00241 * 0.02562 * 19 18 3 21 21 C 1.38219 * 119.99833 * 180.22411 * 2 1 3 22 22 N 1.48015 * 120.00065 * 0.03096 * 21 2 1 23 23 O 1.21804 * 120.00059 * 187.09598 * 22 21 2 24 24 O 1.21803 * 119.99892 * 7.08749 * 22 21 2 25 25 H 1.09000 * 109.46737 * 97.00260 * 1 2 3 26 26 H 1.08990 * 109.47315 * 217.00400 * 1 2 3 27 27 H 1.08997 * 109.46952 * 337.01024 * 1 2 3 28 28 H 1.09000 * 109.47287 * 163.09579 * 4 3 2 29 29 H 1.08998 * 109.47302 * 43.09162 * 4 3 2 30 30 H 1.08993 * 109.47160 * 62.30809 * 6 5 4 31 31 H 1.09008 * 109.46610 * 302.31449 * 6 5 4 32 32 H 1.08998 * 109.47097 * 182.31437 * 6 5 4 33 33 H 1.09000 * 109.47119 * 180.02562 * 9 7 5 34 34 H 1.09002 * 109.47201 * 300.00144 * 9 7 5 35 35 H 1.08997 * 109.47174 * 59.99781 * 9 7 5 36 36 H 0.97006 * 119.99910 * 179.97438 * 13 12 10 37 37 H 1.07997 * 119.99926 * 180.27442 * 18 3 2 38 38 H 1.08001 * 119.99676 * 179.97438 * 19 18 3 39 39 H 1.08000 * 119.99680 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 1.4449 2.5024 -0.0006 5 7 0.9290 2.7694 -1.3499 6 6 2.0263 3.0298 -2.2912 7 6 -0.0287 3.8832 -1.3365 8 1 -0.7710 3.7148 -0.5563 9 6 0.7145 5.1915 -1.0594 10 6 -0.7170 3.9700 -2.6743 11 1 -0.4681 3.2678 -3.4562 12 6 -1.6643 4.9460 -2.9002 13 7 -2.2646 5.0221 -4.0678 14 14 -2.0952 6.1602 -1.5475 15 1 -1.2087 7.3474 -1.6472 16 1 -3.5103 6.5852 -1.6963 17 1 -1.9092 5.5132 -0.2239 18 6 3.5805 1.1972 0.0057 19 6 4.2717 -0.0001 0.0063 20 6 3.5806 -1.1971 0.0006 21 6 2.1980 -1.1970 -0.0047 22 7 1.4579 -2.4788 -0.0104 23 8 2.0599 -3.5302 0.1158 24 8 0.2470 -2.4823 -0.1411 25 1 -0.3633 -0.1253 -1.0200 26 1 -0.3633 -0.8206 0.6185 27 1 -0.3633 0.9460 0.4014 28 1 2.1147 3.3087 0.2983 29 1 0.6130 2.4420 0.7011 30 1 2.6595 2.1458 -2.3646 31 1 2.6187 3.8724 -1.9343 32 1 1.6148 3.2648 -3.2728 33 1 0.0038 6.0179 -1.0490 34 1 1.2123 5.1287 -0.0918 35 1 1.4568 5.3599 -1.8396 36 1 -2.9314 5.7086 -4.2266 37 1 4.1205 2.1325 0.0102 38 1 5.3517 -0.0002 0.0104 39 1 4.1206 -2.1324 0.0006 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000063095304.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:55:31 Heat of formation + Delta-G solvation = 20.975725 kcal Electronic energy + Delta-G solvation = -22080.905420 eV Core-core repulsion = 18798.770743 eV Total energy + Delta-G solvation = -3282.134677 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.28204 -40.93831 -38.82981 -37.73091 -35.01635 -34.05347 -33.42360 -31.22788 -29.03457 -28.13889 -27.18785 -26.88537 -25.33712 -23.21425 -22.28290 -20.97793 -19.66167 -19.63368 -18.66649 -18.61803 -17.22285 -17.11661 -16.91781 -16.30621 -15.55328 -15.34929 -14.88640 -14.54868 -14.51744 -14.13740 -13.97257 -13.75291 -13.40829 -13.25125 -13.18308 -13.00552 -12.92698 -12.59060 -12.40588 -12.34940 -12.22660 -11.96375 -11.82178 -11.58530 -11.40202 -11.08655 -10.74490 -10.44552 -9.93182 -8.94146 -8.25478 -6.28046 -1.15006 0.01998 0.35454 0.45909 1.30770 1.37203 1.46779 2.30752 2.33392 3.09426 3.27361 3.40241 3.48394 3.80715 3.93481 4.00847 4.10797 4.37317 4.42356 4.46181 4.56099 4.58956 4.64206 4.66532 4.69838 4.80833 4.86028 4.94056 5.01296 5.07902 5.14046 5.24566 5.26042 5.36781 5.45172 5.63825 5.65487 6.03599 6.38923 6.55749 6.68860 6.79293 7.36585 8.91624 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.025116 B = 0.004765 C = 0.004336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1114.578189 B = 5874.735255 C = 6455.807684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.004 4.004 3 C -0.083 4.083 4 C 0.087 3.913 5 N -0.535 5.535 6 C 0.039 3.961 7 C 0.186 3.814 8 H 0.036 0.964 9 C -0.182 4.182 10 C -0.498 4.498 11 H 0.035 0.965 12 C 0.010 3.990 13 N -0.952 5.952 14 Si 0.950 3.050 15 H -0.268 1.268 16 H -0.304 1.304 17 H -0.245 1.245 18 C -0.047 4.047 19 C -0.110 4.110 20 C -0.057 4.057 21 C -0.072 4.072 22 N 0.035 4.965 23 O -0.177 6.177 24 O -0.195 6.195 25 H 0.071 0.929 26 H 0.084 0.916 27 H 0.078 0.922 28 H 0.068 0.932 29 H 0.084 0.916 30 H 0.064 0.936 31 H 0.039 0.961 32 H 0.043 0.957 33 H 0.033 0.967 34 H 0.066 0.934 35 H 0.057 0.943 36 H 0.264 0.736 37 H 0.170 0.830 38 H 0.187 0.813 39 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.198 -6.158 12.853 21.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.006 4.006 3 C -0.085 4.085 4 C -0.040 4.040 5 N -0.258 5.258 6 C -0.109 4.109 7 C 0.078 3.922 8 H 0.054 0.946 9 C -0.240 4.240 10 C -0.537 4.537 11 H 0.053 0.947 12 C -0.187 4.187 13 N -0.593 5.593 14 Si 0.777 3.223 15 H -0.195 1.195 16 H -0.233 1.233 17 H -0.169 1.169 18 C -0.065 4.065 19 C -0.129 4.129 20 C -0.076 4.076 21 C -0.156 4.156 22 N 0.546 4.454 23 O -0.392 6.392 24 O -0.402 6.402 25 H 0.090 0.910 26 H 0.102 0.898 27 H 0.096 0.904 28 H 0.086 0.914 29 H 0.102 0.898 30 H 0.083 0.917 31 H 0.057 0.943 32 H 0.062 0.938 33 H 0.052 0.948 34 H 0.085 0.915 35 H 0.076 0.924 36 H 0.073 0.927 37 H 0.187 0.813 38 H 0.205 0.795 39 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 16.119 -5.903 12.593 21.290 hybrid contribution -0.809 0.834 0.000 1.161 sum 15.310 -5.070 12.593 20.462 Atomic orbital electron populations 1.21122 0.89444 1.03721 1.03398 1.19773 0.97869 0.90539 0.92460 1.19831 0.94477 0.93301 1.00843 1.21131 0.98576 0.92634 0.91672 1.62021 1.15375 1.42037 1.06333 1.22206 0.92684 0.99459 0.96571 1.19570 0.90822 0.86214 0.95626 0.94627 1.22704 1.00772 0.99560 1.00976 1.21162 1.20552 1.13644 0.98312 0.94670 1.25775 0.95824 0.99606 0.97483 1.70049 1.28401 1.35931 1.24922 0.85853 0.75834 0.79659 0.80913 1.19452 1.23261 1.16857 1.21952 0.92442 1.00897 0.91258 1.21570 1.02592 0.89288 0.99407 1.21358 0.89568 1.02504 0.94194 1.21190 0.93426 0.81859 1.19142 1.43924 1.01123 1.03418 0.96927 1.94457 1.69959 1.21279 1.53466 1.94517 0.97162 1.94168 1.54386 0.91010 0.89764 0.90352 0.91429 0.89808 0.91688 0.94260 0.93815 0.94801 0.91502 0.92434 0.92735 0.81265 0.79536 0.81664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.65 8.33 71.24 0.59 -3.06 16 2 C 0.00 -0.12 5.88 -19.87 -0.12 -0.24 16 3 C -0.08 -1.90 4.52 -19.87 -0.09 -1.99 16 4 C 0.09 2.26 3.89 85.56 0.33 2.59 16 5 N -0.53 -18.88 4.65 -906.05 -4.22 -23.10 16 6 C 0.04 1.27 8.37 127.69 1.07 2.34 16 7 C 0.19 7.83 1.90 44.17 0.08 7.91 16 8 H 0.04 1.55 6.97 -2.39 -0.02 1.53 16 9 C -0.18 -6.65 7.93 71.98 0.57 -6.08 16 10 C -0.50 -27.11 8.46 25.60 0.22 -26.89 16 11 H 0.04 2.19 7.39 -2.91 -0.02 2.17 16 12 C 0.01 0.55 5.45 84.65 0.46 1.01 16 13 N -0.95 -58.82 13.96 21.45 0.30 -58.52 16 14 Si 0.95 43.22 24.37 68.60 1.67 44.89 16 15 H -0.27 -11.57 6.87 99.48 0.68 -10.89 16 16 H -0.30 -14.16 7.11 99.48 0.71 -13.45 16 17 H -0.24 -10.08 6.53 99.48 0.65 -9.43 16 18 C -0.05 -0.71 9.09 22.27 0.20 -0.51 16 19 C -0.11 -1.37 10.05 22.27 0.22 -1.15 16 20 C -0.06 -1.03 9.56 22.27 0.21 -0.82 16 21 C -0.07 -1.88 6.83 36.38 0.25 -1.63 16 22 N 0.04 1.08 4.45 -46.46 -0.21 0.88 16 23 O -0.18 -5.37 18.47 18.88 0.35 -5.02 16 24 O -0.19 -6.65 15.39 18.88 0.29 -6.36 16 25 H 0.07 2.51 8.14 -2.39 -0.02 2.49 16 26 H 0.08 2.51 5.92 -2.39 -0.01 2.50 16 27 H 0.08 2.31 5.96 -2.39 -0.01 2.29 16 28 H 0.07 1.44 6.91 -2.39 -0.02 1.42 16 29 H 0.08 2.21 6.33 -2.39 -0.02 2.20 16 30 H 0.06 1.82 6.98 -2.39 -0.02 1.81 16 31 H 0.04 1.10 6.57 -2.38 -0.02 1.09 16 32 H 0.04 1.76 6.71 -2.39 -0.02 1.75 16 33 H 0.03 1.33 3.27 -2.39 -0.01 1.32 16 34 H 0.07 1.93 6.94 -2.39 -0.02 1.91 16 35 H 0.06 2.09 6.47 -2.39 -0.02 2.08 16 36 H 0.26 15.35 8.31 -92.70 -0.77 14.58 16 37 H 0.17 1.57 8.01 -2.91 -0.02 1.54 16 38 H 0.19 0.77 8.06 -2.91 -0.02 0.75 16 39 H 0.17 2.38 7.63 -2.91 -0.02 2.36 16 Total: -1.00 -68.93 308.61 3.19 -65.74 By element: Atomic # 1 Polarization: 9.00 SS G_CDS: 0.99 Total: 10.00 kcal Atomic # 6 Polarization: -32.52 SS G_CDS: 4.01 Total: -28.51 kcal Atomic # 7 Polarization: -76.62 SS G_CDS: -4.12 Total: -80.75 kcal Atomic # 8 Polarization: -12.01 SS G_CDS: 0.64 Total: -11.37 kcal Atomic # 14 Polarization: 43.22 SS G_CDS: 1.67 Total: 44.89 kcal Total: -68.93 3.19 -65.74 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063095304.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.720 kcal (2) G-P(sol) polarization free energy of solvation -68.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.744 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds