Wall clock time and date at job start Tue Mar 31 2020 00:28:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 O 1.33650 * 125.80136 * 2 1 4 4 C 1.34218 * 110.91153 * 180.02562 * 3 2 1 5 5 C 1.34178 * 109.12178 * 359.74641 * 4 3 2 6 6 C 1.36414 * 125.80284 * 180.02562 * 2 1 3 7 7 C 1.47379 * 127.19220 * 359.96170 * 6 2 1 8 8 O 1.21619 * 120.00050 * 0.02562 * 7 6 2 9 9 N 1.34772 * 120.00287 * 179.97438 * 7 6 2 10 10 C 1.46500 * 120.00325 * 179.97438 * 9 7 6 11 11 C 1.53044 * 109.46292 * 205.00322 * 10 9 7 12 12 C 1.53195 * 109.30923 * 178.61634 * 11 10 9 13 13 N 1.46921 * 108.89316 * 54.56851 * 12 11 10 14 14 C 1.36934 * 120.63215 * 126.46549 * 13 12 11 15 15 H 1.07998 * 119.99994 * 331.92264 * 14 13 12 16 16 C 1.38810 * 120.00388 * 151.92430 * 14 13 12 17 17 N 1.31626 * 119.99638 * 343.17136 * 16 14 13 18 18 Si 1.86793 * 120.00463 * 163.16956 * 16 14 13 19 19 H 1.48503 * 109.47141 * 90.00030 * 18 16 14 20 20 H 1.48500 * 109.47595 * 209.99829 * 18 16 14 21 21 H 1.48503 * 109.47257 * 330.00288 * 18 16 14 22 22 C 1.46960 * 118.71677 * 306.63540 * 13 12 11 23 23 C 1.53042 * 109.45707 * 84.93844 * 10 9 7 24 24 H 1.09006 * 109.46812 * 269.99989 * 1 2 3 25 25 H 1.08997 * 109.47288 * 29.99883 * 1 2 3 26 26 H 1.08997 * 109.47138 * 150.00318 * 1 2 3 27 27 H 1.07997 * 125.44179 * 180.02562 * 4 3 2 28 28 H 1.07997 * 127.02715 * 180.26208 * 5 4 3 29 29 H 0.97011 * 119.99925 * 0.02562 * 9 7 6 30 30 H 1.08996 * 109.45178 * 324.97511 * 10 9 7 31 31 H 1.09001 * 109.49638 * 58.66427 * 11 10 9 32 32 H 1.09005 * 109.49671 * 298.56910 * 11 10 9 33 33 H 1.08998 * 109.57751 * 174.42300 * 12 11 10 34 34 H 1.08996 * 109.58755 * 294.70417 * 12 11 10 35 35 H 0.97000 * 119.99586 * 180.02562 * 17 16 14 36 36 H 1.09000 * 109.46633 * 293.57614 * 22 13 12 37 37 H 1.08996 * 109.71718 * 173.28868 * 22 13 12 38 38 H 1.09004 * 109.49452 * 301.33929 * 23 10 9 39 39 H 1.08997 * 109.50129 * 61.39768 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.2888 1.0840 0.0000 4 6 3.5859 0.7391 -0.0006 5 6 3.6849 -0.5990 0.0047 6 6 2.3050 -1.1064 -0.0005 7 6 1.8739 -2.5157 -0.0003 8 8 0.6889 -2.7892 -0.0002 9 7 2.7929 -3.5015 -0.0014 10 6 2.3645 -4.9025 -0.0007 11 6 3.4668 -5.7725 0.6079 12 6 3.0013 -7.2317 0.6386 13 7 2.5969 -7.6307 -0.7163 14 6 3.1312 -8.7463 -1.3038 15 1 4.1213 -9.0793 -1.0296 16 6 2.4004 -9.4491 -2.2518 17 7 1.1013 -9.2625 -2.3522 18 14 3.2603 -10.6596 -3.3851 19 1 3.2693 -12.0052 -2.7569 20 1 2.5382 -10.7233 -4.6811 21 1 4.6573 -10.2129 -3.6182 22 6 1.6109 -6.8074 -1.4301 23 6 2.0918 -5.3529 -1.4377 24 1 -0.3633 0.0000 1.0277 25 1 -0.3634 0.8900 -0.5138 26 1 -0.3633 -0.8900 -0.5138 27 1 4.4172 1.4285 -0.0003 28 1 4.5927 -1.1840 0.0096 29 1 3.7382 -3.2834 -0.0019 30 1 1.4543 -5.0034 0.5904 31 1 3.6768 -5.4361 1.6232 32 1 4.3700 -5.6913 0.0030 33 1 3.8180 -7.8685 0.9786 34 1 2.1540 -7.3308 1.3170 35 1 0.5905 -9.7539 -3.0144 36 1 0.6485 -6.8714 -0.9224 37 1 1.5076 -7.1634 -2.4551 38 1 1.3232 -4.7178 -1.8783 39 1 3.0077 -5.2751 -2.0234 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000066890857.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:28:55 Heat of formation + Delta-G solvation = -8.271189 kcal Electronic energy + Delta-G solvation = -21595.777366 eV Core-core repulsion = 18312.374447 eV Total energy + Delta-G solvation = -3283.402918 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.70298 -39.43527 -37.26265 -34.41624 -33.18606 -32.20609 -31.78599 -30.03397 -29.45752 -27.06136 -25.11384 -23.38869 -22.21617 -21.94517 -20.75422 -19.93707 -19.12186 -17.89256 -16.77280 -16.47442 -15.81301 -15.69781 -14.83448 -14.51349 -14.42780 -13.80464 -13.49961 -13.41377 -13.26624 -13.09114 -13.05144 -12.89224 -12.54475 -12.35523 -11.86297 -11.46989 -11.11037 -10.92796 -10.70322 -10.37315 -10.24577 -10.05304 -9.95784 -9.83815 -9.73910 -9.47560 -8.80826 -8.60136 -8.39158 -6.66463 -5.77173 -3.20134 1.30088 1.90184 2.65022 3.38047 3.45355 3.45794 3.47696 3.50226 4.35700 4.50684 4.71690 4.77727 5.12554 5.31730 5.35379 5.39265 5.41921 5.47400 5.55329 5.65325 5.70475 5.85149 6.02402 6.09719 6.12892 6.25821 6.39047 6.46533 6.63154 6.66918 6.79109 6.86054 6.94458 6.97941 7.39681 7.69409 7.78874 7.80858 8.45404 8.47192 9.22467 9.85839 10.42792 11.31527 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.035006 B = 0.003584 C = 0.003499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 799.675190 B = 7810.946551 C = 8001.060031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.073 3.927 3 O -0.179 6.179 4 C -0.043 4.043 5 C -0.188 4.188 6 C -0.242 4.242 7 C 0.585 3.415 8 O -0.542 6.542 9 N -0.716 5.716 10 C 0.152 3.848 11 C -0.139 4.139 12 C 0.149 3.851 13 N -0.593 5.593 14 C -0.255 4.255 15 H 0.065 0.935 16 C 0.003 3.997 17 N -0.901 5.901 18 Si 0.902 3.098 19 H -0.287 1.287 20 H -0.290 1.290 21 H -0.280 1.280 22 C 0.174 3.826 23 C -0.146 4.146 24 H 0.088 0.912 25 H 0.076 0.924 26 H 0.111 0.889 27 H 0.206 0.794 28 H 0.156 0.844 29 H 0.394 0.606 30 H 0.083 0.917 31 H 0.055 0.945 32 H 0.062 0.938 33 H 0.058 0.942 34 H 0.020 0.980 35 H 0.254 0.746 36 H 0.021 0.979 37 H 0.089 0.911 38 H 0.053 0.947 39 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.622 19.423 5.287 20.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.021 3.979 3 O -0.075 6.075 4 C -0.109 4.109 5 C -0.207 4.207 6 C -0.246 4.246 7 C 0.372 3.628 8 O -0.422 6.422 9 N -0.366 5.366 10 C 0.048 3.952 11 C -0.179 4.179 12 C 0.022 3.978 13 N -0.315 5.315 14 C -0.385 4.385 15 H 0.083 0.917 16 C -0.196 4.196 17 N -0.545 5.545 18 Si 0.732 3.268 19 H -0.214 1.214 20 H -0.216 1.216 21 H -0.205 1.205 22 C 0.048 3.952 23 C -0.186 4.186 24 H 0.106 0.894 25 H 0.094 0.906 26 H 0.129 0.871 27 H 0.223 0.777 28 H 0.174 0.826 29 H 0.228 0.772 30 H 0.101 0.899 31 H 0.074 0.926 32 H 0.081 0.919 33 H 0.076 0.924 34 H 0.038 0.962 35 H 0.064 0.936 36 H 0.039 0.961 37 H 0.107 0.893 38 H 0.072 0.928 39 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 3.560 19.388 5.172 20.379 hybrid contribution 1.247 -0.605 -0.637 1.525 sum 4.807 18.783 4.536 19.912 Atomic orbital electron populations 1.20617 0.83712 1.05126 1.04376 1.22842 0.94150 0.83074 0.97878 1.83755 1.17137 1.35097 1.71538 1.23813 0.83569 0.96366 1.07133 1.22893 0.96786 0.94552 1.06467 1.21311 0.93195 0.94286 1.15855 1.17193 0.85743 0.83587 0.76233 1.90761 1.16547 1.83982 1.50867 1.46118 1.09154 1.06766 1.74524 1.21057 0.98258 0.77597 0.98238 1.22340 0.97957 0.98369 0.99220 1.20828 0.97460 0.91182 0.88359 1.44090 1.49336 1.27214 1.10900 1.19158 0.97146 1.02665 1.19499 0.91703 1.25060 0.94891 0.98010 1.01612 1.70038 1.04640 1.43880 1.35957 0.86312 0.78952 0.81083 0.80492 1.21389 1.21557 1.20514 1.20754 0.90188 0.84893 0.99394 1.22564 1.00836 1.00509 0.94734 0.89401 0.90560 0.87072 0.77696 0.82627 0.77244 0.89935 0.92624 0.91892 0.92367 0.96187 0.93589 0.96118 0.89307 0.92815 0.92728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.85 9.89 36.00 0.36 -0.49 16 2 C 0.07 0.89 7.37 -34.97 -0.26 0.64 16 3 O -0.18 -1.94 10.52 7.65 0.08 -1.86 16 4 C -0.04 -0.37 12.03 29.30 0.35 -0.02 16 5 C -0.19 -1.89 10.60 -37.45 -0.40 -2.29 16 6 C -0.24 -3.21 6.31 -103.27 -0.65 -3.87 16 7 C 0.58 9.38 7.78 -12.54 -0.10 9.28 16 8 O -0.54 -10.32 14.51 5.26 0.08 -10.25 16 9 N -0.72 -10.72 5.07 -54.85 -0.28 -10.99 16 10 C 0.15 2.70 2.41 -67.89 -0.16 2.54 16 11 C -0.14 -2.34 5.55 -26.61 -0.15 -2.49 16 12 C 0.15 3.09 6.51 -3.71 -0.02 3.06 16 13 N -0.59 -14.91 3.00 -172.30 -0.52 -15.43 16 14 C -0.26 -7.00 9.58 -15.06 -0.14 -7.15 16 15 H 0.07 1.73 7.88 -52.49 -0.41 1.32 16 16 C 0.00 0.08 4.92 -17.43 -0.09 0.00 16 17 N -0.90 -26.44 11.20 55.49 0.62 -25.82 16 18 Si 0.90 21.70 29.59 -169.99 -5.03 16.67 16 19 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 20 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 21 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 22 C 0.17 4.28 5.30 -3.69 -0.02 4.26 16 23 C -0.15 -2.97 5.65 -26.61 -0.15 -3.12 16 24 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 25 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.11 1.36 6.48 -51.93 -0.34 1.02 16 27 H 0.21 0.90 8.06 -52.49 -0.42 0.48 16 28 H 0.16 1.19 7.74 -52.49 -0.41 0.79 16 29 H 0.39 4.79 7.77 -40.82 -0.32 4.47 16 30 H 0.08 1.64 7.58 -51.93 -0.39 1.25 16 31 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 33 H 0.06 1.16 7.93 -51.93 -0.41 0.75 16 34 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 35 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 36 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.09 2.43 6.07 -51.93 -0.32 2.12 16 38 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 39 H 0.05 1.11 8.14 -51.93 -0.42 0.68 16 LS Contribution 322.08 15.07 4.85 4.85 Total: -1.00 -32.49 322.08 -7.16 -39.64 By element: Atomic # 1 Polarization: 8.37 SS G_CDS: -5.53 Total: 2.83 kcal Atomic # 6 Polarization: 1.78 SS G_CDS: -1.43 Total: 0.35 kcal Atomic # 7 Polarization: -52.06 SS G_CDS: -0.17 Total: -52.24 kcal Atomic # 8 Polarization: -12.26 SS G_CDS: 0.16 Total: -12.11 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.03 Total: 16.67 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -32.49 -7.16 -39.64 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000066890857.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.374 kcal (2) G-P(sol) polarization free energy of solvation -32.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.645 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds