Wall clock time and date at job start Tue Mar 31 2020 00:28:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 O 1.33650 * 125.80136 * 2 1 4 4 C 1.34218 * 110.91153 * 180.02562 * 3 2 1 5 5 C 1.34178 * 109.12178 * 359.74641 * 4 3 2 6 6 C 1.36414 * 125.80284 * 180.02562 * 2 1 3 7 7 C 1.47379 * 127.19220 * 359.96170 * 6 2 1 8 8 O 1.21619 * 120.00050 * 0.02562 * 7 6 2 9 9 N 1.34772 * 120.00287 * 179.97438 * 7 6 2 10 10 C 1.46500 * 120.00325 * 179.97438 * 9 7 6 11 11 C 1.53044 * 109.46292 * 205.00322 * 10 9 7 12 12 C 1.53195 * 109.30923 * 178.61634 * 11 10 9 13 13 N 1.46921 * 108.89316 * 54.56851 * 12 11 10 14 14 C 1.36934 * 120.63215 * 126.46549 * 13 12 11 15 15 H 1.07998 * 119.99994 * 331.92264 * 14 13 12 16 16 C 1.38810 * 120.00388 * 151.92430 * 14 13 12 17 17 N 1.31626 * 119.99638 * 343.17136 * 16 14 13 18 18 Si 1.86793 * 120.00463 * 163.16956 * 16 14 13 19 19 H 1.48503 * 109.47141 * 90.00030 * 18 16 14 20 20 H 1.48500 * 109.47595 * 209.99829 * 18 16 14 21 21 H 1.48503 * 109.47257 * 330.00288 * 18 16 14 22 22 C 1.46960 * 118.71677 * 306.63540 * 13 12 11 23 23 C 1.53042 * 109.45707 * 84.93844 * 10 9 7 24 24 H 1.09006 * 109.46812 * 269.99989 * 1 2 3 25 25 H 1.08997 * 109.47288 * 29.99883 * 1 2 3 26 26 H 1.08997 * 109.47138 * 150.00318 * 1 2 3 27 27 H 1.07997 * 125.44179 * 180.02562 * 4 3 2 28 28 H 1.07997 * 127.02715 * 180.26208 * 5 4 3 29 29 H 0.97011 * 119.99925 * 0.02562 * 9 7 6 30 30 H 1.08996 * 109.45178 * 324.97511 * 10 9 7 31 31 H 1.09001 * 109.49638 * 58.66427 * 11 10 9 32 32 H 1.09005 * 109.49671 * 298.56910 * 11 10 9 33 33 H 1.08998 * 109.57751 * 174.42300 * 12 11 10 34 34 H 1.08996 * 109.58755 * 294.70417 * 12 11 10 35 35 H 0.97000 * 119.99586 * 180.02562 * 17 16 14 36 36 H 1.09000 * 109.46633 * 293.57614 * 22 13 12 37 37 H 1.08996 * 109.71718 * 173.28868 * 22 13 12 38 38 H 1.09004 * 109.49452 * 301.33929 * 23 10 9 39 39 H 1.08997 * 109.50129 * 61.39768 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.2888 1.0840 0.0000 4 6 3.5859 0.7391 -0.0006 5 6 3.6849 -0.5990 0.0047 6 6 2.3050 -1.1064 -0.0005 7 6 1.8739 -2.5157 -0.0003 8 8 0.6889 -2.7892 -0.0002 9 7 2.7929 -3.5015 -0.0014 10 6 2.3645 -4.9025 -0.0007 11 6 3.4668 -5.7725 0.6079 12 6 3.0013 -7.2317 0.6386 13 7 2.5969 -7.6307 -0.7163 14 6 3.1312 -8.7463 -1.3038 15 1 4.1213 -9.0793 -1.0296 16 6 2.4004 -9.4491 -2.2518 17 7 1.1013 -9.2625 -2.3522 18 14 3.2603 -10.6596 -3.3851 19 1 3.2693 -12.0052 -2.7569 20 1 2.5382 -10.7233 -4.6811 21 1 4.6573 -10.2129 -3.6182 22 6 1.6109 -6.8074 -1.4301 23 6 2.0918 -5.3529 -1.4377 24 1 -0.3633 0.0000 1.0277 25 1 -0.3634 0.8900 -0.5138 26 1 -0.3633 -0.8900 -0.5138 27 1 4.4172 1.4285 -0.0003 28 1 4.5927 -1.1840 0.0096 29 1 3.7382 -3.2834 -0.0019 30 1 1.4543 -5.0034 0.5904 31 1 3.6768 -5.4361 1.6232 32 1 4.3700 -5.6913 0.0030 33 1 3.8180 -7.8685 0.9786 34 1 2.1540 -7.3308 1.3170 35 1 0.5905 -9.7539 -3.0144 36 1 0.6485 -6.8714 -0.9224 37 1 1.5076 -7.1634 -2.4551 38 1 1.3232 -4.7178 -1.8783 39 1 3.0077 -5.2751 -2.0234 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000066890857.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:28:54 Heat of formation + Delta-G solvation = -29.810411 kcal Electronic energy + Delta-G solvation = -21596.711376 eV Core-core repulsion = 18312.374447 eV Total energy + Delta-G solvation = -3284.336929 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.51758 -40.78026 -38.89998 -36.03683 -34.27183 -33.69078 -32.75931 -31.75966 -31.18362 -28.02169 -26.87048 -24.69730 -23.92253 -23.28923 -21.83527 -21.32252 -20.48967 -18.99074 -18.57037 -17.31862 -17.19994 -16.88106 -16.58475 -15.83197 -15.67947 -15.35904 -15.33454 -14.82109 -14.40748 -14.33458 -14.17886 -13.96397 -13.82014 -13.74045 -13.19240 -13.01773 -12.68496 -12.66237 -12.55323 -12.13200 -12.08110 -11.86416 -11.55178 -11.41011 -10.96754 -10.82217 -10.58173 -10.02986 -9.50743 -8.71466 -7.87703 -5.34124 0.34115 1.15470 1.47582 1.49272 1.59086 1.84479 2.27153 2.34712 2.51801 3.28632 3.62085 3.65353 3.77454 3.89669 3.94033 4.06826 4.31796 4.36875 4.45850 4.61024 4.65221 4.65403 4.74653 4.77713 4.84012 4.93245 5.04181 5.06339 5.11994 5.22426 5.30402 5.39870 5.45079 5.55220 5.63766 5.68811 6.05468 6.38287 6.60788 7.13055 7.25985 7.83828 8.36943 9.19631 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.035006 B = 0.003584 C = 0.003499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 799.675190 B = 7810.946551 C = 8001.060031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.066 3.934 3 O -0.181 6.181 4 C -0.029 4.029 5 C -0.198 4.198 6 C -0.270 4.270 7 C 0.581 3.419 8 O -0.582 6.582 9 N -0.703 5.703 10 C 0.163 3.837 11 C -0.121 4.121 12 C 0.142 3.858 13 N -0.609 5.609 14 C -0.264 4.264 15 H 0.074 0.926 16 C -0.053 4.053 17 N -0.938 5.938 18 Si 0.970 3.030 19 H -0.284 1.284 20 H -0.295 1.295 21 H -0.267 1.267 22 C 0.184 3.816 23 C -0.130 4.130 24 H 0.096 0.904 25 H 0.100 0.900 26 H 0.086 0.914 27 H 0.252 0.748 28 H 0.180 0.820 29 H 0.412 0.588 30 H 0.059 0.941 31 H 0.091 0.909 32 H 0.075 0.925 33 H 0.068 0.932 34 H 0.012 0.988 35 H 0.249 0.751 36 H -0.010 1.010 37 H 0.055 0.945 38 H 0.044 0.956 39 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.478 21.366 5.880 23.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.013 3.987 3 O -0.077 6.077 4 C -0.093 4.093 5 C -0.217 4.217 6 C -0.275 4.275 7 C 0.370 3.630 8 O -0.464 6.464 9 N -0.354 5.354 10 C 0.058 3.942 11 C -0.161 4.161 12 C 0.016 3.984 13 N -0.333 5.333 14 C -0.394 4.394 15 H 0.091 0.909 16 C -0.248 4.248 17 N -0.584 5.584 18 Si 0.797 3.203 19 H -0.210 1.210 20 H -0.222 1.222 21 H -0.191 1.191 22 C 0.057 3.943 23 C -0.170 4.170 24 H 0.114 0.886 25 H 0.118 0.882 26 H 0.105 0.895 27 H 0.267 0.733 28 H 0.198 0.802 29 H 0.249 0.751 30 H 0.077 0.923 31 H 0.109 0.891 32 H 0.094 0.906 33 H 0.087 0.913 34 H 0.030 0.970 35 H 0.058 0.942 36 H 0.008 0.992 37 H 0.073 0.927 38 H 0.063 0.937 39 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 6.475 21.363 5.794 23.063 hybrid contribution 0.348 -1.146 -0.766 1.422 sum 6.823 20.218 5.028 21.922 Atomic orbital electron populations 1.20602 0.83240 1.05065 1.04896 1.23064 0.94846 0.83326 0.97479 1.83786 1.18152 1.34505 1.71289 1.24716 0.83416 0.96804 1.04409 1.23178 0.95983 0.95376 1.07121 1.21253 0.95510 0.92732 1.18000 1.17648 0.85219 0.84884 0.75210 1.90745 1.18282 1.84772 1.52591 1.45814 1.10079 1.05213 1.74269 1.20685 0.98072 0.79560 0.95851 1.22140 0.97389 0.95083 1.01467 1.21033 0.97471 0.93983 0.85933 1.44335 1.49190 1.27019 1.12765 1.19570 0.97480 1.02910 1.19430 0.90856 1.25880 0.95421 1.00236 1.03313 1.70213 1.06201 1.45333 1.36688 0.85247 0.78222 0.78806 0.77986 1.21042 1.22181 1.19136 1.20456 0.89370 0.87457 0.97012 1.22306 1.00464 0.97318 0.96917 0.88575 0.88178 0.89496 0.73253 0.80244 0.75136 0.92309 0.89084 0.90629 0.91314 0.97006 0.94169 0.99215 0.92673 0.93692 0.92130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.66 9.89 71.23 0.70 -0.96 16 2 C 0.07 1.52 7.37 25.26 0.19 1.71 16 3 O -0.18 -3.44 10.52 4.46 0.05 -3.39 16 4 C -0.03 -0.38 12.03 66.89 0.80 0.42 16 5 C -0.20 -3.34 10.60 23.65 0.25 -3.09 16 6 C -0.27 -6.80 6.31 -18.99 -0.12 -6.92 16 7 C 0.58 18.39 7.78 86.65 0.67 19.06 16 8 O -0.58 -22.81 14.51 -4.09 -0.06 -22.87 16 9 N -0.70 -19.97 5.07 -445.71 -2.26 -22.23 16 10 C 0.16 5.71 2.41 45.02 0.11 5.82 16 11 C -0.12 -3.80 5.55 30.67 0.17 -3.63 16 12 C 0.14 5.76 6.51 86.36 0.56 6.32 16 13 N -0.61 -31.03 3.00 -699.03 -2.10 -33.13 16 14 C -0.26 -14.53 9.58 84.03 0.81 -13.73 16 15 H 0.07 3.84 7.88 -2.91 -0.02 3.82 16 16 C -0.05 -3.02 4.92 84.86 0.42 -2.60 16 17 N -0.94 -57.06 11.20 21.65 0.24 -56.81 16 18 Si 0.97 45.06 29.59 68.60 2.03 47.09 16 19 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 20 H -0.30 -13.88 7.11 99.48 0.71 -13.17 16 21 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 22 C 0.18 9.42 5.30 86.36 0.46 9.88 16 23 C -0.13 -5.36 5.65 30.67 0.17 -5.19 16 24 H 0.10 1.74 8.14 -2.38 -0.02 1.72 16 25 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 26 H 0.09 2.22 6.48 -2.39 -0.02 2.20 16 27 H 0.25 0.80 8.06 -2.91 -0.02 0.78 16 28 H 0.18 2.01 7.74 -2.91 -0.02 1.98 16 29 H 0.41 8.78 7.77 -92.70 -0.72 8.06 16 30 H 0.06 2.38 7.58 -2.39 -0.02 2.36 16 31 H 0.09 2.28 8.14 -2.39 -0.02 2.26 16 32 H 0.08 2.24 8.14 -2.38 -0.02 2.22 16 33 H 0.07 2.63 7.93 -2.39 -0.02 2.61 16 34 H 0.01 0.50 8.14 -2.39 -0.02 0.49 16 35 H 0.25 14.69 8.31 -92.71 -0.77 13.92 16 36 H -0.01 -0.58 8.14 -2.39 -0.02 -0.60 16 37 H 0.05 3.18 6.07 -2.39 -0.01 3.16 16 38 H 0.04 1.91 8.14 -2.38 -0.02 1.89 16 39 H 0.06 2.42 8.14 -2.39 -0.02 2.40 16 Total: -1.00 -73.35 322.08 3.43 -69.92 By element: Atomic # 1 Polarization: 13.99 SS G_CDS: 0.34 Total: 14.33 kcal Atomic # 6 Polarization: 1.90 SS G_CDS: 5.19 Total: 7.09 kcal Atomic # 7 Polarization: -108.05 SS G_CDS: -4.12 Total: -112.17 kcal Atomic # 8 Polarization: -26.25 SS G_CDS: -0.01 Total: -26.26 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 2.03 Total: 47.09 kcal Total: -73.35 3.43 -69.92 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000066890857.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.106 kcal (2) G-P(sol) polarization free energy of solvation -73.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.916 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds