Wall clock time and date at job start Tue Mar 31 2020 01:08:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.40372 * 126.64540 * 2 1 4 4 C 1.35132 * 107.11027 * 179.97438 * 3 2 1 5 5 O 1.33927 * 108.77113 * 359.76171 * 4 3 2 6 6 C 1.34915 * 109.38346 * 0.39784 * 5 4 3 7 7 C 1.46658 * 125.98769 * 179.86595 * 6 5 4 8 8 O 1.21690 * 120.00118 * 179.69066 * 7 6 5 9 9 N 1.34778 * 119.99913 * 359.68994 * 7 6 5 10 10 C 1.46500 * 119.99805 * 180.02562 * 9 7 6 11 11 C 1.53065 * 109.45413 * 84.79314 * 10 9 7 12 12 C 1.53192 * 109.29648 * 181.24177 * 11 10 9 13 13 N 1.46922 * 108.89269 * 305.57538 * 12 11 10 14 14 C 1.36942 * 120.62796 * 233.51528 * 13 12 11 15 15 H 1.08007 * 119.99636 * 151.83092 * 14 13 12 16 16 C 1.38806 * 120.00203 * 331.83144 * 14 13 12 17 17 N 1.31624 * 120.00191 * 343.08250 * 16 14 13 18 18 Si 1.86800 * 120.00146 * 163.07925 * 16 14 13 19 19 H 1.48503 * 109.47195 * 89.99708 * 18 16 14 20 20 H 1.48498 * 109.47355 * 210.00264 * 18 16 14 21 21 H 1.48504 * 109.46850 * 330.00278 * 18 16 14 22 22 C 1.46924 * 118.73925 * 53.53382 * 13 12 11 23 23 C 1.53049 * 109.45577 * 204.99994 * 10 9 7 24 24 H 1.09004 * 109.47481 * 270.02773 * 1 2 3 25 25 H 1.09008 * 109.47235 * 30.02346 * 1 2 3 26 26 H 1.09001 * 109.47232 * 150.02262 * 1 2 3 27 27 H 1.08001 * 126.44460 * 359.97438 * 3 2 1 28 28 H 1.08010 * 125.60958 * 180.02562 * 4 3 2 29 29 H 0.96998 * 120.00301 * 0.02562 * 9 7 6 30 30 H 1.08992 * 109.46107 * 324.96879 * 10 9 7 31 31 H 1.09005 * 109.39523 * 61.36241 * 11 10 9 32 32 H 1.09004 * 109.62174 * 301.25928 * 11 10 9 33 33 H 1.09003 * 109.58615 * 185.71531 * 12 11 10 34 34 H 1.08998 * 109.58372 * 65.43477 * 12 11 10 35 35 H 0.96995 * 120.00379 * 180.02562 * 17 16 14 36 36 H 1.09007 * 109.58325 * 66.18371 * 22 13 12 37 37 H 1.08996 * 109.58499 * 186.46256 * 22 13 12 38 38 H 1.09002 * 109.49883 * 58.66699 * 23 10 9 39 39 H 1.08993 * 109.49715 * 298.56552 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3448 1.1263 0.0000 4 6 3.6183 0.6744 0.0006 5 8 3.6004 -0.6647 0.0062 6 6 2.3219 -1.0955 0.0005 7 6 1.8842 -2.4952 0.0011 8 8 0.6967 -2.7614 0.0012 9 7 2.7970 -3.4868 0.0016 10 6 2.3597 -4.8850 0.0016 11 6 2.0830 -5.3327 -1.4357 12 6 1.5964 -6.7852 -1.4287 13 7 2.5784 -7.6125 -0.7147 14 6 3.1081 -8.7302 -1.3026 15 1 4.0962 -9.0683 -1.0273 16 6 2.3751 -9.4284 -2.2523 17 7 1.0768 -9.2367 -2.3532 18 14 3.2311 -10.6402 -3.3872 19 1 3.2347 -11.9870 -2.7614 20 1 2.5096 -10.6987 -4.6838 21 1 4.6299 -10.1983 -3.6186 22 6 2.9810 -7.2181 0.6421 23 6 3.4556 -5.7619 0.6120 24 1 -0.3634 0.0005 1.0277 25 1 -0.3634 0.8898 -0.5142 26 1 -0.3634 -0.8902 -0.5135 27 1 2.0306 2.1596 -0.0004 28 1 4.5046 1.2917 0.0011 29 1 3.7435 -3.2747 0.0018 30 1 1.4480 -4.9803 0.5912 31 1 2.9998 -5.2589 -2.0207 32 1 1.3172 -4.6945 -1.8768 33 1 1.4948 -7.1415 -2.4539 34 1 0.6322 -6.8451 -0.9239 35 1 0.5645 -9.7249 -3.0165 36 1 2.1303 -7.3114 1.3173 37 1 3.7914 -7.8617 0.9843 38 1 3.6661 -5.4268 1.6276 39 1 4.3601 -5.6864 0.0086 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070158425.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:08:49 Heat of formation + Delta-G solvation = -6.898648 kcal Electronic energy + Delta-G solvation = -21649.016689 eV Core-core repulsion = 18365.673288 eV Total energy + Delta-G solvation = -3283.343400 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.83149 -39.52462 -37.33555 -34.74311 -33.98406 -32.20379 -30.71780 -29.99283 -29.44325 -27.61338 -25.08916 -23.19193 -22.24527 -21.91387 -20.97266 -20.02945 -19.26601 -18.04771 -16.79911 -16.48864 -16.08437 -15.81007 -14.80207 -14.43041 -14.28965 -13.78291 -13.59935 -13.50599 -13.19449 -13.16128 -12.97462 -12.67065 -12.57724 -12.36906 -11.89411 -11.49694 -11.13519 -10.95440 -10.70786 -10.40760 -10.25983 -10.10063 -9.99896 -9.87285 -9.76200 -9.54186 -8.91100 -8.61744 -8.41190 -6.67780 -5.78005 -3.21096 0.98402 2.18104 2.61140 3.23853 3.35045 3.39102 3.45347 3.47479 4.50155 4.53624 4.62176 4.83682 5.27985 5.30831 5.37251 5.40772 5.45323 5.61653 5.63279 5.63772 5.81989 5.88099 6.01127 6.07480 6.22256 6.26402 6.34581 6.42570 6.58228 6.65356 6.69199 6.78043 6.90504 6.93400 7.37452 7.63835 7.69612 7.80195 8.24411 8.45784 9.21554 9.84835 10.41529 11.30640 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.034990 B = 0.003631 C = 0.003543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 800.043964 B = 7708.737832 C = 7900.773889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C -0.093 4.093 3 C -0.225 4.225 4 C -0.011 4.011 5 O -0.164 6.164 6 C -0.079 4.079 7 C 0.598 3.402 8 O -0.517 6.517 9 N -0.713 5.713 10 C 0.150 3.850 11 C -0.147 4.147 12 C 0.174 3.826 13 N -0.593 5.593 14 C -0.255 4.255 15 H 0.066 0.934 16 C 0.003 3.997 17 N -0.901 5.901 18 Si 0.902 3.098 19 H -0.287 1.287 20 H -0.289 1.289 21 H -0.279 1.279 22 C 0.149 3.851 23 C -0.139 4.139 24 H 0.073 0.927 25 H 0.065 0.935 26 H 0.089 0.911 27 H 0.154 0.846 28 H 0.208 0.792 29 H 0.399 0.601 30 H 0.085 0.915 31 H 0.055 0.945 32 H 0.054 0.946 33 H 0.090 0.910 34 H 0.021 0.979 35 H 0.254 0.746 36 H 0.021 0.979 37 H 0.059 0.941 38 H 0.056 0.944 39 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.516 19.763 5.280 20.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.096 4.096 3 C -0.245 4.245 4 C -0.080 4.080 5 O -0.059 6.059 6 C -0.131 4.131 7 C 0.383 3.617 8 O -0.395 6.395 9 N -0.362 5.362 10 C 0.047 3.953 11 C -0.187 4.187 12 C 0.048 3.952 13 N -0.315 5.315 14 C -0.385 4.385 15 H 0.083 0.917 16 C -0.196 4.196 17 N -0.545 5.545 18 Si 0.732 3.268 19 H -0.214 1.214 20 H -0.215 1.215 21 H -0.205 1.205 22 C 0.022 3.978 23 C -0.179 4.179 24 H 0.091 0.909 25 H 0.084 0.916 26 H 0.107 0.893 27 H 0.172 0.828 28 H 0.225 0.775 29 H 0.233 0.767 30 H 0.103 0.897 31 H 0.074 0.926 32 H 0.073 0.927 33 H 0.108 0.892 34 H 0.040 0.960 35 H 0.064 0.936 36 H 0.039 0.961 37 H 0.077 0.923 38 H 0.075 0.925 39 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 3.789 19.216 5.167 20.256 hybrid contribution 0.899 -0.121 -0.639 1.109 sum 4.688 19.095 4.528 20.177 Atomic orbital electron populations 1.20426 0.88208 1.03651 1.02851 1.20654 0.97737 0.90989 1.00246 1.21738 0.92503 1.00091 1.10118 1.24318 0.99888 0.80741 1.03090 1.84064 1.28543 1.22615 1.70709 1.22123 0.81296 0.95207 1.14461 1.16559 0.86054 0.81691 0.77365 1.90857 1.15663 1.82159 1.50848 1.46274 1.09432 1.06949 1.73508 1.21142 0.98390 0.77256 0.98488 1.22588 1.00960 1.00650 0.94549 1.20752 0.90227 0.84783 0.99483 1.44100 1.49676 1.27019 1.10748 1.19161 0.97326 1.02593 1.19412 0.91668 1.25061 0.94884 0.98013 1.01607 1.70032 1.04614 1.43967 1.35898 0.86311 0.78957 0.81077 0.80497 1.21381 1.21548 1.20497 1.20838 0.97491 0.91170 0.88343 1.22343 0.97965 0.98295 0.99295 0.90882 0.91646 0.89271 0.82814 0.77500 0.76666 0.89727 0.92597 0.92709 0.89230 0.96047 0.93567 0.96137 0.92259 0.92515 0.91753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.08 9.82 36.00 0.35 -0.73 16 2 C -0.09 -1.16 6.20 -104.43 -0.65 -1.80 16 3 C -0.23 -2.13 10.83 -39.88 -0.43 -2.56 16 4 C -0.01 -0.09 12.08 29.63 0.36 0.27 16 5 O -0.16 -1.92 10.40 5.00 0.05 -1.86 16 6 C -0.08 -1.09 7.13 -36.80 -0.26 -1.35 16 7 C 0.60 9.64 7.75 -12.86 -0.10 9.54 16 8 O -0.52 -9.77 14.40 5.20 0.07 -9.69 16 9 N -0.71 -10.79 5.07 -55.07 -0.28 -11.07 16 10 C 0.15 2.65 2.41 -67.87 -0.16 2.49 16 11 C -0.15 -2.97 5.66 -26.60 -0.15 -3.12 16 12 C 0.17 4.25 5.30 -3.71 -0.02 4.23 16 13 N -0.59 -14.84 3.00 -172.32 -0.52 -15.36 16 14 C -0.26 -6.99 9.58 -15.06 -0.14 -7.13 16 15 H 0.07 1.74 7.89 -52.48 -0.41 1.32 16 16 C 0.00 0.09 4.92 -17.43 -0.09 0.00 16 17 N -0.90 -26.34 11.20 55.49 0.62 -25.72 16 18 Si 0.90 21.66 29.59 -169.99 -5.03 16.63 16 19 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 20 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 21 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 22 C 0.15 3.07 6.52 -3.71 -0.02 3.04 16 23 C -0.14 -2.34 5.55 -26.61 -0.15 -2.49 16 24 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 25 H 0.06 0.59 8.14 -51.92 -0.42 0.17 16 26 H 0.09 1.21 6.44 -51.93 -0.33 0.88 16 27 H 0.15 1.03 8.06 -52.49 -0.42 0.61 16 28 H 0.21 0.83 8.06 -52.48 -0.42 0.41 16 29 H 0.40 5.13 8.36 -40.82 -0.34 4.78 16 30 H 0.08 1.65 7.58 -51.93 -0.39 1.25 16 31 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 32 H 0.05 1.11 8.14 -51.93 -0.42 0.68 16 33 H 0.09 2.44 6.06 -51.93 -0.31 2.13 16 34 H 0.02 0.56 8.14 -51.93 -0.42 0.13 16 35 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 36 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.06 1.18 7.93 -51.93 -0.41 0.76 16 38 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 39 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 LS Contribution 322.52 15.07 4.86 4.86 Total: -1.00 -31.73 322.52 -7.25 -38.99 By element: Atomic # 1 Polarization: 8.42 SS G_CDS: -5.57 Total: 2.85 kcal Atomic # 6 Polarization: 1.84 SS G_CDS: -1.47 Total: 0.38 kcal Atomic # 7 Polarization: -51.97 SS G_CDS: -0.17 Total: -52.15 kcal Atomic # 8 Polarization: -11.68 SS G_CDS: 0.13 Total: -11.56 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.03 Total: 16.63 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -31.73 -7.25 -38.99 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070158425.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.088 kcal (2) G-P(sol) polarization free energy of solvation -31.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.986 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds