Wall clock time and date at job start Tue Mar 31 2020 01:08:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.40372 * 126.64540 * 2 1 4 4 C 1.35132 * 107.11027 * 179.97438 * 3 2 1 5 5 O 1.33927 * 108.77113 * 359.76171 * 4 3 2 6 6 C 1.34915 * 109.38346 * 0.39784 * 5 4 3 7 7 C 1.46658 * 125.98769 * 179.86595 * 6 5 4 8 8 O 1.21690 * 120.00118 * 179.69066 * 7 6 5 9 9 N 1.34778 * 119.99913 * 359.68994 * 7 6 5 10 10 C 1.46500 * 119.99805 * 180.02562 * 9 7 6 11 11 C 1.53065 * 109.45413 * 84.79314 * 10 9 7 12 12 C 1.53192 * 109.29648 * 181.24177 * 11 10 9 13 13 N 1.46922 * 108.89269 * 305.57538 * 12 11 10 14 14 C 1.36942 * 120.62796 * 233.51528 * 13 12 11 15 15 H 1.08007 * 119.99636 * 151.83092 * 14 13 12 16 16 C 1.38806 * 120.00203 * 331.83144 * 14 13 12 17 17 N 1.31624 * 120.00191 * 343.08250 * 16 14 13 18 18 Si 1.86800 * 120.00146 * 163.07925 * 16 14 13 19 19 H 1.48503 * 109.47195 * 89.99708 * 18 16 14 20 20 H 1.48498 * 109.47355 * 210.00264 * 18 16 14 21 21 H 1.48504 * 109.46850 * 330.00278 * 18 16 14 22 22 C 1.46924 * 118.73925 * 53.53382 * 13 12 11 23 23 C 1.53049 * 109.45577 * 204.99994 * 10 9 7 24 24 H 1.09004 * 109.47481 * 270.02773 * 1 2 3 25 25 H 1.09008 * 109.47235 * 30.02346 * 1 2 3 26 26 H 1.09001 * 109.47232 * 150.02262 * 1 2 3 27 27 H 1.08001 * 126.44460 * 359.97438 * 3 2 1 28 28 H 1.08010 * 125.60958 * 180.02562 * 4 3 2 29 29 H 0.96998 * 120.00301 * 0.02562 * 9 7 6 30 30 H 1.08992 * 109.46107 * 324.96879 * 10 9 7 31 31 H 1.09005 * 109.39523 * 61.36241 * 11 10 9 32 32 H 1.09004 * 109.62174 * 301.25928 * 11 10 9 33 33 H 1.09003 * 109.58615 * 185.71531 * 12 11 10 34 34 H 1.08998 * 109.58372 * 65.43477 * 12 11 10 35 35 H 0.96995 * 120.00379 * 180.02562 * 17 16 14 36 36 H 1.09007 * 109.58325 * 66.18371 * 22 13 12 37 37 H 1.08996 * 109.58499 * 186.46256 * 22 13 12 38 38 H 1.09002 * 109.49883 * 58.66699 * 23 10 9 39 39 H 1.08993 * 109.49715 * 298.56552 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3448 1.1263 0.0000 4 6 3.6183 0.6744 0.0006 5 8 3.6004 -0.6647 0.0062 6 6 2.3219 -1.0955 0.0005 7 6 1.8842 -2.4952 0.0011 8 8 0.6967 -2.7614 0.0012 9 7 2.7970 -3.4868 0.0016 10 6 2.3597 -4.8850 0.0016 11 6 2.0830 -5.3327 -1.4357 12 6 1.5964 -6.7852 -1.4287 13 7 2.5784 -7.6125 -0.7147 14 6 3.1081 -8.7302 -1.3026 15 1 4.0962 -9.0683 -1.0273 16 6 2.3751 -9.4284 -2.2523 17 7 1.0768 -9.2367 -2.3532 18 14 3.2311 -10.6402 -3.3872 19 1 3.2347 -11.9870 -2.7614 20 1 2.5096 -10.6987 -4.6838 21 1 4.6299 -10.1983 -3.6186 22 6 2.9810 -7.2181 0.6421 23 6 3.4556 -5.7619 0.6120 24 1 -0.3634 0.0005 1.0277 25 1 -0.3634 0.8898 -0.5142 26 1 -0.3634 -0.8902 -0.5135 27 1 2.0306 2.1596 -0.0004 28 1 4.5046 1.2917 0.0011 29 1 3.7435 -3.2747 0.0018 30 1 1.4480 -4.9803 0.5912 31 1 2.9998 -5.2589 -2.0207 32 1 1.3172 -4.6945 -1.8768 33 1 1.4948 -7.1415 -2.4539 34 1 0.6322 -6.8451 -0.9239 35 1 0.5645 -9.7249 -3.0165 36 1 2.1303 -7.3114 1.3173 37 1 3.7914 -7.8617 0.9843 38 1 3.6661 -5.4268 1.6276 39 1 4.3601 -5.6864 0.0086 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070158425.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:08:48 Heat of formation + Delta-G solvation = -27.919634 kcal Electronic energy + Delta-G solvation = -21649.928227 eV Core-core repulsion = 18365.673288 eV Total energy + Delta-G solvation = -3284.254939 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -43.66307 -40.85173 -38.95758 -36.20240 -35.02419 -33.95934 -32.04097 -31.55596 -30.88732 -28.65249 -26.89576 -24.51793 -23.93919 -23.15263 -22.05798 -21.35707 -20.66040 -19.20710 -18.63871 -17.41632 -17.27008 -16.98637 -16.65997 -15.80922 -15.63826 -15.37087 -15.22852 -14.83487 -14.55178 -14.30230 -14.06041 -14.02645 -13.87987 -13.51734 -13.20796 -13.03307 -12.80046 -12.68079 -12.55933 -12.14945 -12.09104 -11.87642 -11.58035 -11.46464 -11.11618 -10.66366 -10.58843 -10.18122 -9.55645 -8.71997 -7.87997 -5.34439 0.03976 1.42668 1.47428 1.49195 1.58988 1.69615 2.09066 2.23771 2.51591 3.28258 3.63071 3.73161 3.81683 3.86207 3.97225 4.03555 4.29119 4.44416 4.54231 4.63179 4.64151 4.73271 4.76249 4.77417 4.83102 4.99526 5.03792 5.10343 5.10933 5.23210 5.29310 5.38733 5.44461 5.50565 5.63347 5.68334 5.88785 6.38105 6.48311 7.05417 7.12814 7.83474 8.36330 9.19244 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.034990 B = 0.003631 C = 0.003543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 800.043964 B = 7708.737832 C = 7900.773889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C -0.096 4.096 3 C -0.235 4.235 4 C 0.015 3.985 5 O -0.171 6.171 6 C -0.118 4.118 7 C 0.595 3.405 8 O -0.557 6.557 9 N -0.702 5.702 10 C 0.162 3.838 11 C -0.131 4.131 12 C 0.184 3.816 13 N -0.610 5.610 14 C -0.264 4.264 15 H 0.073 0.927 16 C -0.053 4.053 17 N -0.938 5.938 18 Si 0.970 3.030 19 H -0.284 1.284 20 H -0.295 1.295 21 H -0.267 1.267 22 C 0.142 3.858 23 C -0.122 4.122 24 H 0.077 0.923 25 H 0.090 0.910 26 H 0.060 0.940 27 H 0.184 0.816 28 H 0.258 0.742 29 H 0.414 0.586 30 H 0.064 0.936 31 H 0.060 0.940 32 H 0.047 0.953 33 H 0.056 0.944 34 H -0.008 1.008 35 H 0.250 0.750 36 H 0.014 0.986 37 H 0.069 0.931 38 H 0.091 0.909 39 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.182 22.226 5.872 24.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.099 4.099 3 C -0.254 4.254 4 C -0.054 4.054 5 O -0.067 6.067 6 C -0.169 4.169 7 C 0.383 3.617 8 O -0.438 6.438 9 N -0.352 5.352 10 C 0.057 3.943 11 C -0.171 4.171 12 C 0.057 3.943 13 N -0.333 5.333 14 C -0.394 4.394 15 H 0.091 0.909 16 C -0.248 4.248 17 N -0.584 5.584 18 Si 0.797 3.203 19 H -0.210 1.210 20 H -0.221 1.221 21 H -0.192 1.192 22 C 0.016 3.984 23 C -0.162 4.162 24 H 0.095 0.905 25 H 0.109 0.891 26 H 0.079 0.921 27 H 0.201 0.799 28 H 0.274 0.726 29 H 0.250 0.750 30 H 0.082 0.918 31 H 0.078 0.922 32 H 0.066 0.934 33 H 0.074 0.926 34 H 0.010 0.990 35 H 0.059 0.941 36 H 0.032 0.968 37 H 0.087 0.913 38 H 0.110 0.890 39 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 6.506 21.705 5.787 23.386 hybrid contribution 0.075 -0.752 -0.766 1.076 sum 6.581 20.952 5.021 22.528 Atomic orbital electron populations 1.20426 0.88263 1.03453 1.03047 1.21030 0.98179 0.91942 0.98782 1.22098 0.92267 1.00628 1.10417 1.25377 1.01431 0.79589 0.99043 1.84051 1.27291 1.24329 1.70980 1.21606 0.82669 0.94079 1.18558 1.16881 0.85566 0.82878 0.76347 1.90835 1.17236 1.83114 1.52585 1.45981 1.10161 1.05578 1.73486 1.20775 0.98253 0.79068 0.96168 1.22330 1.00573 0.97535 0.96708 1.20454 0.89449 0.87286 0.97118 1.44349 1.49555 1.26815 1.12629 1.19565 0.97631 1.02850 1.19361 0.90887 1.25876 0.95413 1.00244 1.03298 1.70204 1.06136 1.45417 1.36614 0.85251 0.78207 0.78813 0.78010 1.21026 1.22147 1.19198 1.21035 0.97534 0.93851 0.85946 1.22147 0.97376 0.95157 1.01471 0.90476 0.89122 0.92118 0.79869 0.72629 0.74963 0.91783 0.92161 0.93417 0.92593 0.98989 0.94140 0.96806 0.91263 0.89035 0.90725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.13 9.82 71.23 0.70 -1.43 16 2 C -0.10 -2.24 6.20 -19.74 -0.12 -2.36 16 3 C -0.24 -3.58 10.83 22.07 0.24 -3.34 16 4 C 0.01 0.19 12.08 67.10 0.81 1.00 16 5 O -0.17 -3.51 10.40 -5.02 -0.05 -3.57 16 6 C -0.12 -3.12 7.13 24.07 0.17 -2.95 16 7 C 0.60 19.28 7.75 86.44 0.67 19.95 16 8 O -0.56 -21.89 14.40 -4.32 -0.06 -21.95 16 9 N -0.70 -20.68 5.07 -446.35 -2.26 -22.95 16 10 C 0.16 5.69 2.41 45.03 0.11 5.80 16 11 C -0.13 -5.43 5.66 30.68 0.17 -5.25 16 12 C 0.18 9.39 5.30 86.36 0.46 9.84 16 13 N -0.61 -31.06 3.00 -699.10 -2.09 -33.15 16 14 C -0.26 -14.56 9.58 84.03 0.81 -13.75 16 15 H 0.07 3.84 7.89 -2.91 -0.02 3.82 16 16 C -0.05 -3.01 4.92 84.86 0.42 -2.59 16 17 N -0.94 -56.93 11.20 21.65 0.24 -56.69 16 18 Si 0.97 45.13 29.59 68.60 2.03 47.16 16 19 H -0.28 -12.95 7.11 99.48 0.71 -12.25 16 20 H -0.30 -13.87 7.11 99.48 0.71 -13.17 16 21 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16 22 C 0.14 5.78 6.52 86.36 0.56 6.35 16 23 C -0.12 -3.88 5.55 30.67 0.17 -3.71 16 24 H 0.08 1.63 8.14 -2.38 -0.02 1.61 16 25 H 0.09 1.50 8.14 -2.38 -0.02 1.48 16 26 H 0.06 1.72 6.44 -2.39 -0.02 1.70 16 27 H 0.18 1.60 8.06 -2.91 -0.02 1.58 16 28 H 0.26 0.45 8.06 -2.91 -0.02 0.42 16 29 H 0.41 9.80 8.36 -92.71 -0.77 9.02 16 30 H 0.06 2.56 7.58 -2.39 -0.02 2.54 16 31 H 0.06 2.42 8.14 -2.38 -0.02 2.41 16 32 H 0.05 2.01 8.14 -2.38 -0.02 1.99 16 33 H 0.06 3.22 6.06 -2.39 -0.01 3.20 16 34 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 35 H 0.25 14.68 8.31 -92.71 -0.77 13.91 16 36 H 0.01 0.59 8.14 -2.38 -0.02 0.57 16 37 H 0.07 2.65 7.93 -2.39 -0.02 2.64 16 38 H 0.09 2.34 8.14 -2.39 -0.02 2.32 16 39 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 Total: -1.00 -72.34 322.52 3.24 -69.10 By element: Atomic # 1 Polarization: 14.21 SS G_CDS: 0.28 Total: 14.49 kcal Atomic # 6 Polarization: 2.39 SS G_CDS: 5.16 Total: 7.56 kcal Atomic # 7 Polarization: -108.67 SS G_CDS: -4.12 Total: -112.79 kcal Atomic # 8 Polarization: -25.40 SS G_CDS: -0.11 Total: -25.52 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 2.03 Total: 47.16 kcal Total: -72.34 3.24 -69.10 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070158425.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.176 kcal (2) G-P(sol) polarization free energy of solvation -72.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.096 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds