Wall clock time and date at job start Tue Mar 31 2020 00:02:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42899 * 114.00014 * 2 1 4 4 C 1.52995 * 109.47249 * 179.97438 * 3 2 1 5 5 N 1.46505 * 109.47192 * 67.48995 * 4 3 2 6 6 C 1.46503 * 119.99688 * 278.19009 * 5 4 3 7 7 C 1.50701 * 109.46926 * 269.99277 * 6 5 4 8 8 H 1.07995 * 120.00060 * 0.02562 * 7 6 5 9 9 C 1.37875 * 119.99715 * 179.97438 * 7 6 5 10 10 N 1.31517 * 120.00151 * 0.02562 * 9 7 6 11 11 Si 1.86799 * 119.99899 * 180.02562 * 9 7 6 12 12 H 1.48504 * 109.47206 * 60.00655 * 11 9 7 13 13 H 1.48503 * 109.47176 * 180.02562 * 11 9 7 14 14 H 1.48501 * 109.47366 * 300.00623 * 11 9 7 15 15 C 1.34777 * 120.00026 * 98.18488 * 5 4 3 16 16 O 1.21552 * 119.99827 * 186.09916 * 15 5 4 17 17 C 1.47842 * 119.99703 * 6.10525 * 15 5 4 18 18 C 1.40016 * 120.55978 * 315.45434 * 17 15 5 19 19 C 1.38364 * 118.28877 * 179.70619 * 18 17 15 20 20 C 1.38355 * 119.29878 * 0.27525 * 19 18 17 21 21 C 1.50701 * 119.45688 * 179.97438 * 20 19 18 22 22 N 1.31923 * 121.08270 * 0.02562 * 20 19 18 23 23 C 1.31699 * 121.87850 * 359.97438 * 22 20 19 24 24 H 1.09001 * 109.47370 * 300.00171 * 1 2 3 25 25 H 1.09000 * 109.47260 * 60.00235 * 1 2 3 26 26 H 1.08999 * 109.47159 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.46929 * 59.99791 * 3 2 1 28 28 H 1.09003 * 109.47205 * 300.00144 * 3 2 1 29 29 H 1.08998 * 109.47356 * 307.49041 * 4 3 2 30 30 H 1.09000 * 109.47610 * 187.48774 * 4 3 2 31 31 H 1.08997 * 109.46952 * 30.00025 * 6 5 4 32 32 H 1.09000 * 109.46872 * 149.99840 * 6 5 4 33 33 H 0.97000 * 120.00025 * 179.97438 * 10 9 7 34 34 H 1.08000 * 120.85918 * 359.97438 * 18 17 15 35 35 H 1.08000 * 120.34992 * 180.25307 * 19 18 17 36 36 H 1.08999 * 109.46902 * 89.99941 * 21 20 19 37 37 H 1.09000 * 109.47320 * 210.00324 * 21 20 19 38 38 H 1.09002 * 109.47181 * 330.00264 * 21 20 19 39 39 H 1.07998 * 119.71324 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1847 0.0006 5 7 3.9810 0.6187 -1.2751 6 6 3.9403 -0.8302 -1.4877 7 6 5.2474 -1.4390 -1.0496 8 1 6.0299 -0.8097 -0.6522 9 6 5.4438 -2.7996 -1.1551 10 7 4.4907 -3.5661 -1.6386 11 14 7.0637 -3.5544 -0.6115 12 1 7.2828 -3.2712 0.8298 13 1 7.0226 -5.0232 -0.8270 14 1 8.1738 -2.9690 -1.4053 15 6 4.4283 1.4311 -2.2531 16 8 4.6930 0.9750 -3.3483 17 6 4.5969 2.8768 -1.9938 18 6 3.6092 3.5976 -1.3117 19 6 3.8183 4.9471 -1.0891 20 6 4.9828 5.5366 -1.5483 21 6 5.2139 7.0063 -1.3083 22 7 5.8935 4.8335 -2.1936 23 6 5.7403 3.5469 -2.4298 24 1 -0.3634 0.5139 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.6885 1.8464 0.8900 28 1 1.6886 1.8464 -0.8900 29 1 3.8479 0.5326 0.8163 30 1 3.9780 2.1717 0.1346 31 1 3.1257 -1.2602 -0.9049 32 1 3.7793 -1.0378 -2.5455 33 1 4.6290 -4.5233 -1.7133 34 1 2.7093 3.1119 -0.9643 35 1 3.0803 5.5342 -0.5628 36 1 5.7317 7.1424 -0.3588 37 1 5.8217 7.4152 -2.1155 38 1 4.2554 7.5245 -1.2769 39 1 6.5087 3.0050 -2.9611 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071141079.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:02:43 Heat of formation + Delta-G solvation = -34.199891 kcal Electronic energy + Delta-G solvation = -21908.044406 eV Core-core repulsion = 18623.517135 eV Total energy + Delta-G solvation = -3284.527271 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.58907 -38.72835 -37.53996 -35.00468 -33.31534 -32.53696 -32.19120 -29.68986 -28.36665 -26.87597 -25.98415 -23.92974 -23.01141 -22.78535 -22.00415 -19.07077 -17.07838 -16.82377 -16.59820 -16.41105 -15.60564 -15.48361 -15.21244 -14.76669 -14.57132 -14.35701 -13.95261 -13.71808 -13.44779 -12.83846 -12.57439 -12.41323 -12.21380 -12.11657 -11.87521 -11.74078 -11.71161 -11.26642 -10.93731 -10.88046 -10.44702 -10.13048 -9.81983 -9.70466 -9.59335 -9.44016 -9.06846 -8.81797 -8.35139 -7.68924 -5.97484 -4.01899 0.87091 1.20359 3.25706 3.35921 3.39995 3.43214 3.70644 3.93059 3.97298 4.25693 4.49529 4.58376 4.78971 4.86067 5.00895 5.20767 5.28749 5.33532 5.37499 5.39272 5.40024 5.44243 5.51030 5.53419 5.59469 5.68486 5.83324 5.84920 5.97819 6.13057 6.19600 6.61723 7.20711 7.35024 7.51156 7.61618 7.93126 7.99652 8.30454 8.38122 8.87048 9.05207 9.61797 11.10588 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.015360 B = 0.005750 C = 0.004548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1822.513438 B = 4868.668893 C = 6154.916588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.366 6.366 3 C 0.040 3.960 4 C 0.100 3.900 5 N -0.579 5.579 6 C 0.246 3.754 7 C -0.529 4.529 8 H 0.055 0.945 9 C 0.063 3.937 10 N -0.892 5.892 11 Si 0.896 3.104 12 H -0.277 1.277 13 H -0.286 1.286 14 H -0.277 1.277 15 C 0.549 3.451 16 O -0.531 6.531 17 C -0.170 4.170 18 C -0.061 4.061 19 C -0.180 4.180 20 C 0.132 3.868 21 C -0.104 4.104 22 N -0.487 5.487 23 C 0.153 3.847 24 H 0.035 0.965 25 H 0.036 0.964 26 H 0.086 0.914 27 H 0.055 0.945 28 H 0.048 0.952 29 H 0.093 0.907 30 H 0.088 0.912 31 H 0.055 0.945 32 H 0.042 0.958 33 H 0.263 0.737 34 H 0.145 0.855 35 H 0.137 0.863 36 H 0.078 0.922 37 H 0.077 0.923 38 H 0.074 0.926 39 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.336 17.527 5.627 19.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.284 6.284 3 C -0.037 4.037 4 C -0.024 4.024 5 N -0.310 5.310 6 C 0.127 3.873 7 C -0.568 4.568 8 H 0.073 0.927 9 C -0.139 4.139 10 N -0.531 5.531 11 Si 0.724 3.276 12 H -0.203 1.203 13 H -0.212 1.212 14 H -0.202 1.202 15 C 0.334 3.666 16 O -0.408 6.408 17 C -0.176 4.176 18 C -0.087 4.087 19 C -0.200 4.200 20 C -0.006 4.006 21 C -0.161 4.161 22 N -0.197 5.197 23 C -0.004 4.004 24 H 0.054 0.946 25 H 0.055 0.945 26 H 0.104 0.896 27 H 0.073 0.927 28 H 0.066 0.934 29 H 0.111 0.889 30 H 0.106 0.894 31 H 0.072 0.928 32 H 0.060 0.940 33 H 0.072 0.928 34 H 0.163 0.837 35 H 0.155 0.845 36 H 0.097 0.903 37 H 0.096 0.904 38 H 0.093 0.907 39 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -5.384 17.286 4.718 18.710 hybrid contribution -0.185 -0.739 0.691 1.029 sum -5.569 16.547 5.409 18.277 Atomic orbital electron populations 1.22728 0.81933 1.02818 0.99123 1.88148 1.18835 1.26369 1.95081 1.23208 0.95191 0.85910 0.99426 1.21766 0.91416 1.00196 0.89065 1.48152 1.60682 1.09919 1.12210 1.19449 0.97647 0.71379 0.98800 1.21407 1.00382 0.92430 1.42564 0.92678 1.24896 0.96799 0.96972 0.95240 1.69934 1.32645 1.05168 1.45365 0.86594 0.84031 0.77985 0.78991 1.20304 1.21200 1.20237 1.18013 0.78850 0.84612 0.85126 1.90774 1.50782 1.76170 1.23104 1.21321 0.97664 0.96571 1.02019 1.22209 0.98715 0.94039 0.93722 1.21860 0.99324 0.95293 1.03515 1.21452 0.89883 0.96826 0.92441 1.20730 1.02859 0.89386 1.03136 1.67589 1.30505 1.07632 1.13954 1.22904 0.95194 0.89226 0.93125 0.94637 0.94516 0.89574 0.92741 0.93440 0.88896 0.89425 0.92757 0.94031 0.92753 0.83745 0.84510 0.90305 0.90413 0.90723 0.81739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 11.01 101.05 1.11 1.50 16 2 O -0.37 -6.24 8.93 -35.23 -0.31 -6.56 16 3 C 0.04 0.56 5.23 37.16 0.19 0.76 16 4 C 0.10 1.65 5.34 -4.04 -0.02 1.62 16 5 N -0.58 -12.50 2.46 -176.17 -0.43 -12.94 16 6 C 0.25 6.56 5.07 -5.19 -0.03 6.53 16 7 C -0.53 -15.21 9.39 -34.44 -0.32 -15.53 16 8 H 0.05 1.57 7.81 -52.49 -0.41 1.16 16 9 C 0.06 1.83 5.46 -17.82 -0.10 1.73 16 10 N -0.89 -26.90 13.29 55.43 0.74 -26.17 16 11 Si 0.90 22.14 29.54 -169.99 -5.02 17.12 16 12 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 13 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 14 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 15 C 0.55 11.84 7.31 -12.33 -0.09 11.75 16 16 O -0.53 -13.72 16.54 5.32 0.09 -13.63 16 17 C -0.17 -2.88 5.14 -104.82 -0.54 -3.42 16 18 C -0.06 -0.80 7.52 -38.87 -0.29 -1.09 16 19 C -0.18 -1.95 9.72 -39.49 -0.38 -2.34 16 20 C 0.13 1.58 6.78 -82.51 -0.56 1.02 16 21 C -0.10 -0.84 10.16 36.01 0.37 -0.48 16 22 N -0.49 -7.26 10.25 -9.14 -0.09 -7.35 16 23 C 0.15 2.51 10.86 -17.13 -0.19 2.32 16 24 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 25 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 27 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.05 0.63 6.42 -51.93 -0.33 0.30 16 29 H 0.09 1.62 8.13 -51.93 -0.42 1.20 16 30 H 0.09 1.21 4.96 -51.93 -0.26 0.96 16 31 H 0.05 1.49 6.45 -51.93 -0.33 1.16 16 32 H 0.04 1.26 7.35 -51.93 -0.38 0.88 16 33 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 34 H 0.15 1.67 3.79 -52.49 -0.20 1.47 16 35 H 0.14 1.00 8.06 -52.49 -0.42 0.58 16 36 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 37 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 38 H 0.07 0.44 8.07 -51.93 -0.42 0.02 16 39 H 0.17 2.69 8.06 -52.49 -0.42 2.26 16 LS Contribution 327.56 15.07 4.94 4.94 Total: -1.00 -35.03 327.56 -6.22 -41.25 By element: Atomic # 1 Polarization: 4.22 SS G_CDS: -5.27 Total: -1.05 kcal Atomic # 6 Polarization: 5.23 SS G_CDS: -0.85 Total: 4.38 kcal Atomic # 7 Polarization: -46.66 SS G_CDS: 0.21 Total: -46.45 kcal Atomic # 8 Polarization: -19.96 SS G_CDS: -0.23 Total: -20.19 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.12 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -35.03 -6.22 -41.25 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071141079.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.052 kcal (2) G-P(sol) polarization free energy of solvation -35.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.252 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds