Wall clock time and date at job start Tue Mar 31 2020 00:02:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42899 * 114.00014 * 2 1 4 4 C 1.52995 * 109.47249 * 179.97438 * 3 2 1 5 5 N 1.46505 * 109.47192 * 67.48995 * 4 3 2 6 6 C 1.46503 * 119.99688 * 278.19009 * 5 4 3 7 7 C 1.50701 * 109.46926 * 269.99277 * 6 5 4 8 8 H 1.07995 * 120.00060 * 0.02562 * 7 6 5 9 9 C 1.37875 * 119.99715 * 179.97438 * 7 6 5 10 10 N 1.31517 * 120.00151 * 0.02562 * 9 7 6 11 11 Si 1.86799 * 119.99899 * 180.02562 * 9 7 6 12 12 H 1.48504 * 109.47206 * 60.00655 * 11 9 7 13 13 H 1.48503 * 109.47176 * 180.02562 * 11 9 7 14 14 H 1.48501 * 109.47366 * 300.00623 * 11 9 7 15 15 C 1.34777 * 120.00026 * 98.18488 * 5 4 3 16 16 O 1.21552 * 119.99827 * 186.09916 * 15 5 4 17 17 C 1.47842 * 119.99703 * 6.10525 * 15 5 4 18 18 C 1.40016 * 120.55978 * 315.45434 * 17 15 5 19 19 C 1.38364 * 118.28877 * 179.70619 * 18 17 15 20 20 C 1.38355 * 119.29878 * 0.27525 * 19 18 17 21 21 C 1.50701 * 119.45688 * 179.97438 * 20 19 18 22 22 N 1.31923 * 121.08270 * 0.02562 * 20 19 18 23 23 C 1.31699 * 121.87850 * 359.97438 * 22 20 19 24 24 H 1.09001 * 109.47370 * 300.00171 * 1 2 3 25 25 H 1.09000 * 109.47260 * 60.00235 * 1 2 3 26 26 H 1.08999 * 109.47159 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.46929 * 59.99791 * 3 2 1 28 28 H 1.09003 * 109.47205 * 300.00144 * 3 2 1 29 29 H 1.08998 * 109.47356 * 307.49041 * 4 3 2 30 30 H 1.09000 * 109.47610 * 187.48774 * 4 3 2 31 31 H 1.08997 * 109.46952 * 30.00025 * 6 5 4 32 32 H 1.09000 * 109.46872 * 149.99840 * 6 5 4 33 33 H 0.97000 * 120.00025 * 179.97438 * 10 9 7 34 34 H 1.08000 * 120.85918 * 359.97438 * 18 17 15 35 35 H 1.08000 * 120.34992 * 180.25307 * 19 18 17 36 36 H 1.08999 * 109.46902 * 89.99941 * 21 20 19 37 37 H 1.09000 * 109.47320 * 210.00324 * 21 20 19 38 38 H 1.09002 * 109.47181 * 330.00264 * 21 20 19 39 39 H 1.07998 * 119.71324 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1847 0.0006 5 7 3.9810 0.6187 -1.2751 6 6 3.9403 -0.8302 -1.4877 7 6 5.2474 -1.4390 -1.0496 8 1 6.0299 -0.8097 -0.6522 9 6 5.4438 -2.7996 -1.1551 10 7 4.4907 -3.5661 -1.6386 11 14 7.0637 -3.5544 -0.6115 12 1 7.2828 -3.2712 0.8298 13 1 7.0226 -5.0232 -0.8270 14 1 8.1738 -2.9690 -1.4053 15 6 4.4283 1.4311 -2.2531 16 8 4.6930 0.9750 -3.3483 17 6 4.5969 2.8768 -1.9938 18 6 3.6092 3.5976 -1.3117 19 6 3.8183 4.9471 -1.0891 20 6 4.9828 5.5366 -1.5483 21 6 5.2139 7.0063 -1.3083 22 7 5.8935 4.8335 -2.1936 23 6 5.7403 3.5469 -2.4298 24 1 -0.3634 0.5139 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.6885 1.8464 0.8900 28 1 1.6886 1.8464 -0.8900 29 1 3.8479 0.5326 0.8163 30 1 3.9780 2.1717 0.1346 31 1 3.1257 -1.2602 -0.9049 32 1 3.7793 -1.0378 -2.5455 33 1 4.6290 -4.5233 -1.7133 34 1 2.7093 3.1119 -0.9643 35 1 3.0803 5.5342 -0.5628 36 1 5.7317 7.1424 -0.3588 37 1 5.8217 7.4152 -2.1155 38 1 4.2554 7.5245 -1.2769 39 1 6.5087 3.0050 -2.9611 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000071141079.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:02:42 Heat of formation + Delta-G solvation = -59.385909 kcal Electronic energy + Delta-G solvation = -21909.136554 eV Core-core repulsion = 18623.517135 eV Total energy + Delta-G solvation = -3285.619419 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.84052 -40.15957 -38.82516 -36.67738 -35.05274 -33.91970 -33.39522 -31.13858 -29.70651 -28.38767 -27.13358 -25.47912 -24.44892 -24.00974 -23.31286 -20.60072 -18.68781 -18.44425 -18.02249 -17.73064 -16.96768 -16.71132 -16.67128 -16.21947 -16.06223 -15.46987 -15.29523 -15.08417 -14.63632 -14.31669 -14.03513 -13.56008 -13.37388 -13.20004 -13.14262 -13.04986 -12.94011 -12.92955 -12.70728 -12.55159 -12.18693 -12.02700 -11.73404 -11.11700 -10.82892 -10.63465 -10.52961 -10.43704 -9.98222 -9.49955 -8.20451 -6.35232 -0.25682 0.16355 1.35627 1.40391 1.47420 1.71956 2.18987 2.41028 2.70937 2.89275 3.09457 3.23317 3.50735 3.68905 3.79088 4.04073 4.10144 4.18756 4.29443 4.33607 4.45527 4.53125 4.60445 4.67979 4.71530 4.85699 4.87956 4.89793 4.98276 5.10793 5.16431 5.24523 5.28519 5.52348 5.65099 5.83147 6.07856 6.31773 6.64673 6.73549 6.87755 7.20298 7.37444 8.86881 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.015360 B = 0.005750 C = 0.004548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1822.513438 B = 4868.668893 C = 6154.916588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.414 6.414 3 C 0.042 3.958 4 C 0.095 3.905 5 N -0.584 5.584 6 C 0.267 3.733 7 C -0.548 4.548 8 H 0.051 0.949 9 C 0.010 3.990 10 N -0.926 5.926 11 Si 0.967 3.033 12 H -0.261 1.261 13 H -0.277 1.277 14 H -0.278 1.278 15 C 0.544 3.456 16 O -0.592 6.592 17 C -0.193 4.193 18 C -0.055 4.055 19 C -0.158 4.158 20 C 0.131 3.869 21 C -0.102 4.102 22 N -0.505 5.505 23 C 0.139 3.861 24 H 0.067 0.933 25 H 0.044 0.956 26 H 0.079 0.921 27 H 0.104 0.896 28 H 0.056 0.944 29 H 0.078 0.922 30 H 0.119 0.881 31 H 0.043 0.957 32 H -0.009 1.009 33 H 0.267 0.733 34 H 0.163 0.837 35 H 0.190 0.810 36 H 0.095 0.905 37 H 0.072 0.928 38 H 0.107 0.893 39 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.100 20.695 8.214 23.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.333 6.333 3 C -0.035 4.035 4 C -0.028 4.028 5 N -0.313 5.313 6 C 0.146 3.854 7 C -0.587 4.587 8 H 0.069 0.931 9 C -0.190 4.190 10 N -0.565 5.565 11 Si 0.791 3.209 12 H -0.185 1.185 13 H -0.201 1.201 14 H -0.203 1.203 15 C 0.332 3.668 16 O -0.474 6.474 17 C -0.198 4.198 18 C -0.080 4.080 19 C -0.177 4.177 20 C -0.007 4.007 21 C -0.159 4.159 22 N -0.215 5.215 23 C -0.018 4.018 24 H 0.085 0.915 25 H 0.063 0.937 26 H 0.098 0.902 27 H 0.122 0.878 28 H 0.074 0.926 29 H 0.097 0.903 30 H 0.137 0.863 31 H 0.061 0.939 32 H 0.009 0.991 33 H 0.076 0.924 34 H 0.180 0.820 35 H 0.207 0.793 36 H 0.114 0.886 37 H 0.091 0.909 38 H 0.126 0.874 39 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -6.169 20.491 7.350 22.627 hybrid contribution -0.006 -1.579 -0.098 1.582 sum -6.175 18.912 7.252 21.175 Atomic orbital electron populations 1.22883 0.79857 1.03181 1.01003 1.88078 1.21314 1.28448 1.95501 1.23287 0.92771 0.85376 1.02082 1.22108 0.93895 1.00947 0.85808 1.48090 1.60842 1.08059 1.14324 1.18809 0.96573 0.74860 0.95174 1.21694 1.01050 0.93059 1.42859 0.93086 1.25836 1.00656 0.97426 0.95034 1.70064 1.34794 1.05570 1.46094 0.85487 0.78930 0.77270 0.79222 1.18513 1.20149 1.20329 1.18757 0.77278 0.86712 0.84055 1.90718 1.53280 1.77890 1.25553 1.20862 0.99874 0.93506 1.05595 1.22409 0.97977 0.95038 0.92588 1.22367 0.99446 0.94157 1.01765 1.22314 0.89430 0.98540 0.90381 1.20896 1.04920 0.86435 1.03687 1.67644 1.32029 1.06649 1.15196 1.22671 0.95100 0.90158 0.93915 0.91462 0.93738 0.90198 0.87807 0.92602 0.90342 0.86316 0.93926 0.99114 0.92436 0.81961 0.79302 0.88630 0.90896 0.87402 0.83684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.64 11.01 113.37 1.25 1.89 16 2 O -0.41 -13.96 8.93 -148.98 -1.33 -15.29 16 3 C 0.04 1.07 5.23 71.98 0.38 1.45 16 4 C 0.09 3.06 5.34 86.38 0.46 3.52 16 5 N -0.58 -26.33 2.46 -829.57 -2.04 -28.37 16 6 C 0.27 15.18 5.07 85.63 0.43 15.62 16 7 C -0.55 -32.98 9.39 25.60 0.24 -32.74 16 8 H 0.05 3.03 7.81 -2.91 -0.02 3.00 16 9 C 0.01 0.57 5.46 84.65 0.46 1.04 16 10 N -0.93 -57.88 13.29 21.45 0.28 -57.60 16 11 Si 0.97 46.32 29.54 68.60 2.03 48.35 16 12 H -0.26 -11.72 7.11 99.48 0.71 -11.01 16 13 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 14 H -0.28 -13.28 7.11 99.48 0.71 -12.57 16 15 C 0.54 24.78 7.31 86.79 0.63 25.42 16 16 O -0.59 -33.23 16.54 -3.88 -0.06 -33.30 16 17 C -0.19 -6.56 5.14 -19.99 -0.10 -6.66 16 18 C -0.05 -1.27 7.52 22.73 0.17 -1.10 16 19 C -0.16 -2.63 9.72 22.33 0.22 -2.41 16 20 C 0.13 2.66 6.78 42.57 0.29 2.95 16 21 C -0.10 -1.17 10.16 71.24 0.72 -0.44 16 22 N -0.51 -14.47 10.25 -182.82 -1.87 -16.35 16 23 C 0.14 4.67 10.86 85.02 0.92 5.60 16 24 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 25 H 0.04 0.96 8.14 -2.39 -0.02 0.95 16 26 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 27 H 0.10 1.67 8.14 -2.38 -0.02 1.65 16 28 H 0.06 1.34 6.42 -2.39 -0.02 1.32 16 29 H 0.08 2.75 8.13 -2.39 -0.02 2.73 16 30 H 0.12 3.03 4.96 -2.39 -0.01 3.02 16 31 H 0.04 2.50 6.45 -2.39 -0.02 2.48 16 32 H -0.01 -0.61 7.35 -2.39 -0.02 -0.63 16 33 H 0.27 15.61 8.31 -92.71 -0.77 14.84 16 34 H 0.16 3.14 3.79 -2.91 -0.01 3.13 16 35 H 0.19 1.25 8.06 -2.91 -0.02 1.23 16 36 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 37 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 38 H 0.11 0.57 8.07 -2.39 -0.02 0.55 16 39 H 0.15 5.22 8.06 -2.91 -0.02 5.20 16 Total: -1.00 -83.86 327.56 4.13 -79.73 By element: Atomic # 1 Polarization: 7.65 SS G_CDS: 1.05 Total: 8.70 kcal Atomic # 6 Polarization: 8.04 SS G_CDS: 6.08 Total: 14.12 kcal Atomic # 7 Polarization: -98.68 SS G_CDS: -3.63 Total: -102.32 kcal Atomic # 8 Polarization: -47.19 SS G_CDS: -1.39 Total: -48.58 kcal Atomic # 14 Polarization: 46.32 SS G_CDS: 2.03 Total: 48.35 kcal Total: -83.86 4.13 -79.73 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071141079.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.346 kcal (2) G-P(sol) polarization free energy of solvation -83.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.732 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds